- Transcript 'Phfumi.CG.MTP2014.S8...' >
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- Transcript 'KH2012:KH.L108.56.v1...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g42833.01.t
Possible name(s)
FOXA1; FOXA2; FOXA3
Gene model
Location
chrUn [278,506,105 / 278,507,383]
Amino acid sequence
Length: 425
>Boschl.CG.Botznik2013.chrUn.g42833.01.p
MTPNFALNANLGVVPGSLPGPPRQDKAYRRNYTHAKPPYSYISLITMAIQSSESKMMTLS
EIYGWIMELFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRSPDKPGKGSYWSLHPDAGNMF
ENGCYLRRQKRFKCEKRAAMKAAQRKQGDGPDDDEQDGQVPMMDVSKREILADHQAEQMT
LVNGVDGVDTKPSFETLHPPTSDSNLPVAQADENKEHNPPAATPVATQEHMEMDRRVTQN
SVQGEVASMLPPPHQMIQPYPGYPTAHHFLXQPSFTLAGDPSGFGAQYAQMSNATAVKPD
PQAFAHPFSINSLVGDQHRRDLHAYQEAAMQYYPMQSLPHVSVPNSGFQSPTVAAQQHSS
QSPVSTAPQHNQQTMTTQQLETVNLSNINGDRTVLTGMAPPPESYYPVSVTSMPSHIPET
SGTVQ
Nucleotide sequence
Length: 1,278
>Boschl.CG.Botznik2013.chrUn.g42833.01.t
CATGACGCCAAATTTTGCGCTCAACGCGAACTTAGGAGTAGTCCCGGGGTCTCTTCCGGG
CCCGCCTCGTCAGGATAAAGCATACCGTCGGAATTATACGCACGCAAAGCCCCCGTATAG
TTACATATCTCTCATCACCATGGCGATTCAATCTAGCGAGAGCAAAATGATGACGCTTAG
CGAAATTTATGGATGGATTATGGAGTTGTTTCCGTTTTACCGACAGAACCAACAGCGGTG
GCAAAATTCAATAAGGCACAGCCTTTCATTCAACGACTGCTTCGTAAAAGTGCCCCGTTC
GCCAGACAAACCAGGAAAAGGCTCTTACTGGTCACTTCATCCCGACGCCGGGAACATGTT
CGAAAACGGATGCTACTTACGCAGACAGAAACGATTTAAATGCGAGAAGAGAGCAGCCAT
GAAGGCGGCGCAACGGAAACAAGGCGACGGACCGGACGACGATGAACAAGACGGCCAGGT
ACCAATGATGGATGTTTCGAAGCGAGAAATTTTAGCCGACCATCAAGCTGAGCAAATGAC
ATTGGTAAATGGCGTGGACGGCGTGGATACGAAACCCTCTTTCGAGACACTACACCCGCC
GACATCAGATTCGAATCTTCCTGTCGCGCAGGCTGACGAAAATAAGGAACATAACCCGCC
AGCGGCAACACCAGTAGCCACACAAGAGCATATGGAGATGGACCGAAGAGTTACGCAGAA
CAGTGTGCAGGGCGAAGTAGCTTCCATGCTTCCTCCGCCGCATCAAATGATTCAACCCTA
TCCGGGGTACCCAACCGCCCATCACTTCCTTCNNCAGCCAAGCTTCACTTTGGCAGGCGA
TCCTTCTGGATTCGGGGCGCAGTACGCGCAAATGTCCAACGCTACCGCCGTGAAACCAGA
CCCTCAAGCGTTTGCGCATCCTTTCTCAATAAATAGCCTGGTCGGCGATCAGCACAGGCG
GGATTTACACGCATACCAGGAGGCCGCTATGCAGTATTATCCCATGCAGAGCCTGCCACA
TGTATCGGTACCTAATTCGGGATTCCAATCGCCCACTGTCGCCGCACAGCAGCATTCATC
TCAGTCGCCTGTCTCTACCGCGCCCCAACATAACCAACAAACCATGACGACGCAGCAATT
GGAAACTGTGAACCTATCGAACATTAACGGCGACAGGACGGTGTTGACCGGTATGGCACC
GCCGCCAGAGTCTTACTACCCAGTTTCTGTAACTTCAATGCCGTCTCACATACCCGAGAC
CAGCGGTACCGTGCAATG
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[34-135] 1.5E-46 |
| SMART |
Fork_head_dom (IPR001766) - T[34-124] 1.0E-59 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[35-130] 3.9E-40 |
| CDD |
Fork_head_dom (IPR001766) - T[36-113] 3.87274E-52 |
| ProSitePatterns |
TF_fork_head_CS_1 (IPR018122) - T[36-49] . |
| Pfam |
Fork_head_dom (IPR001766) - T[36-120] 1.6E-37 |
| ProSiteProfiles |
Fork_head_dom (IPR001766) - T[36-130] 38.892 |
| PRINTS |
Fork_head_dom (IPR001766) - T[36-49] 2.3E-23 - T[57-74] 2.3E-23 - T[80-97] 2.3E-23 |
| ProSitePatterns |
TF_fork_head_CS_2 (IPR030456) - T[80-86] . |
| Pfam |
Forkhead_box_C (IPR018533) - T[306-366] 1.1E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FOXA3_HUMAN | 72.18 % | 212 | 3.07E-65 |
| FOXA2_HUMAN | 85.714 % | 235 | 5.36E-73 |
| FOXA1_HUMAN | 75.182 % | 226 | 3.48E-69 |