Aniseed - Transcript Card

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g43736.01.t

Possible name(s)

SEMA6A; SEMA6B; SEMA6D

Gene model

Boschl.CG.Botznik2013.chrUn.g43736

Location

chrUn [282,477,519 / 282,482,737]

Sequences

Amino acid sequence

Length: 202

>Boschl.CG.Botznik2013.chrUn.g43736.01.p
ICKNDAGGQHILVEQWTKFVKTRLNCSRNGFYFDQLQDVSDPVPVKTSSYSDSVTETIYA
TFTTPENSVPGSAVCSFTLDSIHDALQGRFREERGSRSKKSNAPAGPMHPGKCPGAKYTN
SELQFLKSHPLIEDQARGDLLSTYIGERWTTVSVDTTAGPHRNWTVYFVGTDRGQVLRYL
SPTGDLKNTALLKRQDVYDSTR

Nucleotide sequence

Length: 609

>Boschl.CG.Botznik2013.chrUn.g43736.01.t
TTTGTAAAAACGACGCCGGTGGCCAACACATCCTCGTGGAACAGTGGACGAAATTCGTGA
AGACGAGACTGAACTGCTCGCGCAACGGTTTCTACTTCGATCAATTGCAAGACGTGTCCG
ACCCGGTGCCCGTGAAGACAAGCTCTTACTCCGACAGCGTCACAGAGACTATATACGCCA
CTTTCACCACGCCTGAGAACTCTGTACCAGGATCGGCGGTATGCTCCTTCACTCTGGACT
CGATTCACGACGCGTTACAGGGAAGATTTCGAGAGGAACGCGGGAGTCGCAGCAAGAAAT
CCAACGCTCCCGCGGGTCCGATGCATCCCGGAAAGTGCCCAGGCGCGAAATACACCAACT
CCGAGCTGCAGTTCCTCAAGTCGCACCCGCTGATTGAGGATCAGGCACGCGGAGACCTCC
TGTCGACTTACATCGGAGAGAGGTGGACCACCGTATCAGTTGACACCACAGCCGGACCGC
ACCGAAACTGGACCGTGTATTTCGTGGGTACTGACCGCGGTCAAGTTTTGCGATACCTGT
CGCCGACTGGCGACTTGAAGAATACGGCACTGTTAAAACGACAGGACGTGTACGATTCAA
CGAGGTAAA

InterProScan

Gene3D	WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-202] 8.1E-49
PANTHER	Semaphorin (IPR027231) - T[1-198] 7.7E-50
ProSiteProfiles	Semap_dom (IPR001627) - T[1-202] 43.524
Pfam	Semap_dom (IPR001627) - T[1-190] 4.6E-41
SUPERFAMILY	Semap_dom_sf (IPR036352) - T[1-185] 2.35E-42

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SEM6A_HUMAN	35.683 %	142	4.32E-39
SEM6D_HUMAN	36.283 %	136	2.73E-37
SEM6B_HUMAN	39 %	126	9.51E-34