Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S1057.g15458.01.t

Possible name(s)

DHX38; DHX8; DHX9

Gene model

Harore.CG.MTP2014.S1057.g15458

Location

S1057 [0 / 7,406]

Sequences

Amino acid sequence

Length: 434

>Harore.CG.MTP2014.S1057.g15458.01.p
MTEIKTFLYAWLGKQKLQPSYNIRPSGSKYHPKFMCEVRVETIPYVGIGNSTNKKDAQSN
AAWDFAQYLVRAGKLQASELPSKNTSVHFLPPLSNGSEPVPDGAALPGIVPPHVKLEDEI
QAVNAPCCGTGDVGPGTGFGGFGGAGPSERGGALHEYYDRRKNLEEEERQTLASEEVDMN
ARLHGNWTLENGKGRLNQFFQQEKITAEYKYSQVGPDHNRSFIAEMTIYVRKLGKNLHTR
EHGSNKKNASQSAALSLIRQLFHLGVIEPFTGITKKKKSDEMEPYPVTVDPAMISQLQNL
LEHLDIKPVLPPPSSNTDQTPFNIVPLKKVSFPPSQRQLVVGVIPWSPPQVNWNPWTSCN
IDEGPLANMTPEQVSNDLLRECQYAKENNQQLSKISEERQNLPIFRYKDQLDNAIKTNAV
IIIRGQTGSGKTTQ

Nucleotide sequence

Length: 1,345

>Harore.CG.MTP2014.S1057.g15458.01.t
AGATTAACAACTTAGGAAGTTTTAGAAATAGTTTTCTGTCAGCATGACGGAGATTAAAAC
ATTTTTATACGCTTGGCTCGGTAAACAGAAATTGCAACCGAGTTACAACATTAGACCGAG
TGGTTCAAAATATCATCCGAAGTTTATGTGCGAGGTTCGTGTTGAGACCATTCCATACGT
CGGCATTGGCAATTCAACAAATAAGAAAGATGCTCAGTCTAACGCTGCCTGGGATTTTGC
TCAGTATCTCGTAAGAGCTGGAAAACTACAAGCAAGTGAACTGCCATCGAAAAATACGTC
TGTCCATTTTCTACCACCTCTATCAAACGGATCAGAGCCAGTTCCGGACGGGGCTGCACT
TCCTGGGATCGTGCCACCGCATGTGAAGTTAGAAGATGAAATTCAAGCTGTGAATGCACC
GTGTTGTGGGACTGGCGATGTGGGGCCTGGTACAGGGTTCGGTGGTTTCGGGGGGGCAGG
ACCATCTGAACGTGGTGGAGCTCTCCATGAATATTACGACAGAAGAAAAAATTTAGAAGA
AGAAGAGCGGCAAACTCTCGCGTCCGAGGAAGTTGACATGAACGCTCGACTTCACGGAAA
CTGGACCCTTGAAAATGGAAAGGGAAGATTGAATCAATTCTTCCAGCAGGAGAAAATAAC
GGCTGAATACAAGTATAGTCAAGTTGGACCGGACCATAATCGGAGCTTCATTGCTGAGAT
GACAATCTACGTTAGAAAATTAGGAAAAAATCTGCATACTCGTGAGCACGGCTCAAATAA
GAAGAACGCTTCACAGTCGGCAGCTTTGTCTTTAATCCGTCAGTTGTTCCATCTCGGAGT
TATCGAACCTTTCACTGGTATAACCAAAAAGAAGAAGTCAGATGAGATGGAGCCTTATCC
AGTCACAGTGGATCCAGCTATGATCTCACAATTGCAAAATCTTCTTGAACATTTGGACAT
TAAACCTGTTTTACCGCCACCTAGCAGCAATACTGACCAAACTCCGTTCAACATCGTGCC
ACTGAAAAAAGTTTCGTTCCCACCATCTCAGCGCCAGCTAGTGGTCGGAGTTATCCCGTG
GTCTCCTCCACAGGTCAACTGGAATCCATGGACCAGTTGTAATATAGACGAAGGTCCATT
GGCGAATATGACGCCAGAGCAAGTGAGCAACGATTTACTGAGGGAATGTCAATATGCAAA
AGAAAATAATCAGCAGCTTTCAAAGATCTCAGAAGAGAGACAGAACCTTCCGATCTTCCG
GTACAAGGATCAGCTTGATAACGCAATCAAAACCAACGCTGTCATTATAATTCGTGGACA
GACTGGGTCAGGAAAGACCACACAG

InterProScan

ProSiteProfiles	dsRBD_dom (IPR014720) - T[3-71] 15.291 - T[191-263] 16.893
SMART	dsRBD_dom (IPR014720) - T[4-70] 3.8E-12 - T[192-262] 4.8E-12
Pfam	dsRBD_dom (IPR014720) - T[5-69] 8.8E-9 - T[193-261] 8.0E-11

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DHX9_HUMAN	52.045 %	442	3.57E-144