- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S106.g09007.01.t
Possible name(s)
HDAC4; HDAC7; HDAC9
Gene model
Location
S106 [230,414 / 241,218]
Amino acid sequence
Length: 1,204
>Harore.CG.MTP2014.S106.g09007.01.p
MATDLAAAASTGSMNDEYQKRLFAIRHHQQQLGEQVLLANLQQQQQLQEHLKLFLHKQQN
EQRSAENHHLRALEEEQQRNNLVNAVLNKDKSRASANASSAVKQHLQKFVIGRQKGKTFD
GYPNNVMERTRLRWTPSLDSRNGYHDLSAPYPQSMLMDKRSSFPLRKTASEPNLKLRSRI
RAKVTSDRRSSPLLPRSADVRADLANRIKRKLNTAEQDPERKVEIFLVLFFSATLTKFFF
TFIKDNSACNSAPNSSPSSPLNSNSNINNSSTTGNSIAAKVGLLPGHSSLSEAEFSSYGY
PLSIDQYRSLQSGRDLYTSPSLPNISLGKSDGSTIITGAHPGVIIYPDPDLQRLALARTA
SLPGPLMQQMYKLPGRFADIDGVHPYAAQLLQQQQQQTAKAMLALSLAEVGEKGSSPPGP
IRHAPMTRPHKALSRTHSAPTTTAQLQQHIQRKRLLQQQHKHAPYYLTGLAAEPSHYRPL
ATHKESVEHAESSKQRLPKKLAASPPPTHPSAISSTTAAALVSHLGNKKSGGSYHHFTPH
PDRKSISPPSSSMDHSPTIMDKLSRSVIVAPSSSSHPDSCSDQEEVDVIEVKREPLSPVP
DKAPIDYSPNLGHKQTVAMALKSKIGMSQDHLPFHPSALKGRRSLLDGEMGSHRPLLRTQ
SSPAVSFTQKQPHKKYRYTTGIGYDAVMLRHGCACGDPHAEHSGRLKEIWSRLTNTGLDK
ECENIDTRKATMAELQLAHTEEHTLRYGATPLARQQSVVTNKFIILPCGGVGVDNGIDID
TVWNELDTINAARMAVGLTVDLALSVAANELRNGFALVRPPGHHAEKDLAMAFCYFNSVA
VAARQLQQTYPDKMRRILIVDWDVHHCNGTQNIFYDDPTVLTGEGAGVGFNVNIGFSGGL
NPPMGDAEYLAAFRTVVMPIAEEFDPDFVLVSAGFSAVDGHPPVLGGYKVTPQCFGYLTG
LLTELANGRIVMALEGGFVLDPLCDSVEICVRTLLSEDNAANVAANSLLESSLNGIPCDN
ARYWSRLKRMCSYANISQAAYLGQEQADRACVALASLTVDQVNSKSKDLLGLQSSEQRKS
MSKSFNHSKDKDRDRDEEDNKLVIVTDNTEDPAPDQVRGKDTEEDAMSSESSPLDVVGVS
SPSPAPSPASSPVRHVTFAVDNVVQCDAAPVKPAALADREEEKMTSVKEDEPMDQEDSAA
SDDK
Nucleotide sequence
Length: 3,858
>Harore.CG.MTP2014.S106.g09007.01.t
ATGATGTTGCTTGCAGTAAATATTCATCGTCTAGCGTCAATAAACAGAATAGTGTCTACT
GTTGACCTATCTCTCTGTTATGAAATGGATTTTGACATCATAGTTTTGGTTAGATGCCAG
CTAGTATGAAATAGCAAGTCGTCGCCGCCACCACCACTACTGTCGGAAGCTACGGCTAGA
AACGGAATAAAAGATAAGTCAGACGAGTTTAGGAGTGCTGTTGCAGCTGCGGACAGACAG
GCTATGGCAACAGATCTTGCTGCTGCTGCATCTACGGGCAGTATGAACGATGAGTACCAA
AAACGGCTGTTTGCAATTCGCCATCACCAGCAGCAGCTTGGCGAGCAGGTACTCCTCGCC
AACTTACAGCAACAGCAACAACTTCAAGAACATTTGAAGCTGTTTTTACACAAGCAACAA
AACGAACAACGAAGCGCTGAGAACCATCACTTGAGGGCGTTGGAAGAGGAGCAACAGCGA
AACAATCTTGTCAACGCGGTTCTTAATAAGGACAAGAGTAGAGCGAGTGCAAATGCTTCT
TCTGCCGTGAAGCAACACTTGCAGAAGTTTGTTATCGGTAGACAAAAAGGGAAAACATTT
GATGGTTATCCAAACAATGTGATGGAAAGAACTCGTCTCCGATGGACCCCATCTTTAGAT
AGTCGGAACGGGTATCATGATTTGTCTGCCCCTTATCCGCAATCCATGCTCATGGATAAA
AGAAGCAGTTTCCCTCTTCGGAAGACAGCTTCTGAACCGAACCTGAAATTAAGGTCTCGA
ATTCGAGCTAAAGTGACTTCCGATCGTCGTAGCTCTCCATTGCTTCCTCGTTCTGCTGAC
GTGAGGGCAGATCTGGCAAACCGTATTAAGAGGAAGTTGAACACGGCGGAACAAGACCCT
GAACGTAAAGTTGAGATTTTCCTTGTCTTATTTTTCTCTGCCACCTTGACTAAATTTTTT
TTTACTTTCATCAAAGACAACTCTGCTTGCAACAGTGCTCCTAATTCAAGTCCAAGTTCC
CCTCTAAACAGCAACAGCAATATCAACAACAGTTCAACTACCGGCAATAGCATAGCTGCT
AAAGTCGGCCTATTACCAGGTCACAGCAGTTTATCAGAGGCGGAATTCTCAAGCTATGGT
TACCCACTCAGTATAGATCAGTATAGATCTCTACAGAGTGGTCGCGATCTTTACACTTCA
CCTTCGCTGCCTAATATTTCTCTTGGAAAATCCGACGGCAGTACAATAATTACCGGTGCT
CATCCTGGTGTAATTATCTATCCAGATCCCGATTTGCAGCGTTTGGCTTTGGCACGTACT
GCATCTTTACCTGGTCCTTTGATGCAGCAAATGTATAAATTGCCAGGAAGATTTGCAGAC
ATAGATGGAGTTCATCCCTATGCCGCTCAACTTTTACAGCAGCAGCAACAGCAGACTGCC
AAAGCTATGCTTGCATTATCTTTGGCAGAGGTGGGTGAAAAAGGCTCCTCACCTCCTGGT
CCCATCCGTCACGCCCCTATGACAAGACCTCACAAAGCGCTGAGCCGAACCCACTCTGCC
CCTACCACAACCGCGCAATTGCAACAACATATACAGAGAAAGCGGTTGCTCCAACAACAA
CACAAACATGCCCCTTACTATCTGACAGGCTTGGCTGCTGAACCTTCTCACTATAGACCT
CTCGCAACCCATAAGGAATCCGTTGAACATGCTGAATCGTCTAAACAAAGACTTCCAAAG
AAGTTAGCTGCCTCTCCTCCCCCTACACACCCATCAGCAATCTCAAGTACAACCGCTGCT
GCGCTCGTTTCTCACTTAGGGAATAAAAAGAGTGGGGGTTCCTATCATCATTTTACTCCT
CACCCTGACAGAAAGTCGATTTCCCCTCCTTCCTCGTCCATGGATCATTCTCCGACGATC
ATGGATAAACTTTCCAGATCTGTTATCGTTGCTCCATCTTCCTCCAGTCACCCAGACTCG
TGCTCCGATCAAGAGGAAGTTGATGTCATCGAAGTCAAGCGGGAGCCGCTGTCACCGGTG
CCAGATAAAGCTCCGATAGATTATTCTCCCAATCTTGGCCACAAACAAACTGTCGCTATG
GCACTGAAAAGTAAAATAGGCATGTCACAAGACCACTTACCATTCCACCCTTCAGCACTC
AAAGGAAGAAGATCTTTGTTGGATGGAGAAATGGGCTCGCACCGACCTTTGTTACGAACC
CAGAGCTCACCCGCTGTTTCCTTCACACAGAAACAGCCGCACAAGAAATATCGCTACACA
ACCGGCATTGGATATGATGCAGTCATGCTACGTCATGGCTGCGCCTGTGGCGATCCGCAT
GCTGAACACTCTGGTCGTTTGAAAGAGATCTGGTCAAGACTGACCAACACGGGTCTGGAT
AAAGAATGTGAAAACATAGACACAAGGAAAGCCACGATGGCAGAACTCCAGTTGGCTCAC
ACGGAAGAACACACCCTTCGTTATGGGGCCACGCCACTTGCGAGACAGCAGTCAGTGGTC
ACCAACAAATTCATAATATTGCCCTGTGGTGGAGTCGGCGTCGACAATGGAATTGACATT
GACACAGTTTGGAATGAATTGGACACAATCAATGCAGCACGAATGGCTGTTGGCCTGACA
GTAGACTTGGCTCTGAGCGTAGCAGCTAACGAACTGCGCAACGGATTCGCTCTCGTTCGC
CCACCCGGCCATCACGCCGAAAAAGATCTCGCCATGGCCTTCTGCTACTTTAATTCAGTG
GCTGTGGCAGCACGTCAGTTGCAACAGACATACCCTGACAAAATGAGGAGAATCCTCATA
GTCGACTGGGACGTACACCATTGCAATGGAACGCAGAACATTTTCTATGATGACCCGACG
GTCCTGACCGGCGAAGGCGCAGGGGTTGGGTTCAATGTCAATATCGGCTTCAGCGGCGGA
TTGAATCCACCGATGGGTGACGCTGAGTATCTCGCCGCATTCCGAACAGTCGTCATGCCT
ATTGCAGAAGAGTTCGACCCGGATTTTGTACTTGTATCGGCGGGCTTCTCTGCTGTGGAC
GGACATCCGCCAGTCTTGGGAGGATATAAAGTAACACCACAATGTTTCGGTTACCTGACC
GGTCTTTTGACGGAACTCGCGAATGGGAGGATCGTTATGGCGTTGGAAGGTGGCTTTGTG
CTTGACCCTTTGTGTGACAGCGTAGAAATCTGCGTACGTACATTGCTGTCGGAAGACAAT
GCTGCCAACGTCGCTGCTAACTCTCTTTTGGAATCATCACTCAATGGTATTCCTTGCGAC
AATGCGCGATACTGGAGTCGACTGAAGAGGATGTGCTCGTACGCAAACATCTCTCAAGCT
GCCTATCTTGGCCAGGAGCAAGCTGATCGTGCATGTGTGGCTCTGGCATCACTCACTGTT
GATCAAGTAAATTCAAAATCTAAAGACCTATTGGGCCTGCAGTCCTCTGAACAACGGAAA
TCGATGTCTAAGAGTTTCAATCACTCTAAAGATAAAGATCGTGACAGGGATGAGGAAGAC
AACAAGCTGGTTATTGTGACAGACAACACTGAAGATCCCGCTCCTGATCAAGTTAGAGGA
AAAGATACCGAAGAAGATGCAATGAGTTCCGAATCGTCACCATTGGATGTCGTAGGCGTG
TCGTCACCTTCTCCGGCTCCTTCGCCAGCGTCATCGCCAGTGCGGCATGTGACCTTTGCA
GTTGACAATGTGGTACAATGCGACGCGGCTCCTGTTAAACCGGCTGCTCTGGCAGATCGA
GAGGAAGAGAAGATGACTTCTGTGAAGGAAGATGAGCCGATGGACCAGGAAGACAGCGCC
GCCTCGGACGATAAGTGA
| PANTHER |
His_deacetylse (IPR000286) - T[64-215] 7.0E-210 - T[274-332] 7.0E-210 - T[883-1006] 7.0E-210 |
| Gene3D |
His_deacetylse_dom_sf (IPR037138) - T[672-882] 1.4E-72 - T[883-1053] 6.8E-46 |
| SUPERFAMILY |
Ureohydrolase_dom_sf (IPR023696) - T[677-1005] 1.34E-84 |
| Pfam |
His_deacetylse_dom (IPR023801) - T[699-882] 1.1E-38 - T[883-992] 2.3E-15 |
| PRINTS |
His_deacetylse (IPR000286) - T[820-843] 8.5E-13 - T[856-871] 8.5E-13 - T[926-936] 8.5E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HDAC4_HUMAN | 50.985 % | 439 | 2.07E-135 |
| HDAC5_HUMAN | 46.46 % | 402 | 3.31E-121 |
| HDAC7_HUMAN | 46.862 % | 418 | 7.84E-129 |