Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S1070.g10475.01.t

Possible name(s)

RDH12; RDH13

Gene model

Harore.CG.MTP2014.S1070.g10475

Location

S1070 [4,065 / 5,025]

Sequences

Amino acid sequence

Length: 319

>Harore.CG.MTP2014.S1070.g10475.01.p
MAEKPVETVIRGWVNPEIKIPGKTVVITGANTGIGLATAVDLAKREARVIIACRNMEKGE
EAKKKIVEESKSENVVLKKLDLSSFESIREFAADINATESRLDVLINNAGVMMCPQSETK
DGFELQFGVNHMGHFLLTNLLLDLIKRSAPSRIVTVSSMAHHRWFGTSMQWNDLNMRKNY
ESTLAYGQSKLCNVLFSRELSKKLQGTGVTSNSLEPGAVKTDLQRHVGTLSWPTFRDYLA
SIGNYLTRWFYRTPEKGAQSSIYLTVAPELVEASGNFYANCKQTGESYDAKNDDYAERLW
KMSEEFVGMKKKREEGGAE

Nucleotide sequence

Length: 960

>Harore.CG.MTP2014.S1070.g10475.01.t
ATGGCTGAAAAACCCGTGGAAACAGTCATCAGAGGTTGGGTGAATCCAGAAATCAAAATT
CCTGGCAAAACTGTGGTCATAACAGGAGCTAATACTGGAATTGGTTTAGCAACTGCAGTG
GATTTGGCCAAGAGAGAAGCGAGAGTTATTATCGCTTGCAGGAATATGGAAAAGGGAGAA
GAAGCAAAAAAGAAGATTGTTGAAGAATCAAAATCAGAAAATGTTGTTTTGAAGAAACTC
GATCTCTCGTCGTTTGAATCTATTCGAGAATTTGCCGCTGACATCAATGCTACCGAATCT
CGACTGGATGTTCTCATTAATAACGCAGGGGTGATGATGTGCCCGCAATCCGAGACCAAG
GATGGGTTCGAGCTGCAGTTTGGGGTCAATCATATGGGGCATTTTCTGTTGACAAATTTG
CTTTTGGATTTGATAAAGAGAAGTGCTCCAAGCAGGATCGTGACTGTATCATCTATGGCT
CATCACAGATGGTTCGGAACTTCAATGCAATGGAACGATTTGAATATGAGGAAAAATTAT
GAGTCAACTCTAGCTTATGGTCAAAGCAAGCTATGTAATGTGCTTTTCTCTAGAGAGTTG
AGCAAGAAGCTGCAAGGTACTGGTGTTACATCAAATAGTTTGGAACCTGGAGCTGTTAAG
ACAGATTTACAGAGGCATGTTGGAACCCTCAGTTGGCCAACATTCCGGGACTATCTCGCA
TCCATTGGAAATTATTTAACAAGATGGTTTTATAGGACCCCAGAAAAAGGGGCTCAAAGC
TCGATTTACTTAACGGTTGCTCCGGAGCTCGTCGAAGCCAGTGGGAATTTTTACGCCAAC
TGCAAACAGACGGGAGAGTCATACGATGCAAAGAATGATGATTATGCCGAGAGATTGTGG
AAAATGAGTGAAGAATTTGTTGGAATGAAGAAGAAAAGAGAGGAAGGAGGCGCAGAGTGA

InterProScan

SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[21-284] 5.19E-57
Pfam	SDR_fam (IPR002347) - T[23-161] 1.6E-27
PRINTS	SDR_fam (IPR002347) - T[24-41] 6.4E-19 - T[100-111] 1.0E-5 - T[100-111] 6.4E-19 - T[145-161] 6.4E-19 - T[151-159] 1.0E-5 - T[186-205] 1.0E-5 - T[186-205] 6.4E-19 - T[207-224] 6.4E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RDH11_HUMAN	46.644 %	260	7.52E-86
RDH13_HUMAN	49.342 %	265	1.32E-87
RDH12_HUMAN	48.505 %	264	3.41E-87