- Clone 'cien27324' >
- Clone 'AHC0AAA250YN09' >
- Clone 'cien149611' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S108.g02133.01.t
Possible name(s)
CCT3; CCT4; CCT5
Gene model
Location
S108 [23,250 / 28,295]
Amino acid sequence
Length: 531
>Harore.CG.MTP2014.S108.g02133.01.p
MSAPVLVLNQNTKRESGKKVQLGNVNAAKTIADVIRTCLGPRSMMKMLMDPQGGIVMTND
GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMMSVAEQFLVQKMHPTVI
IGAYRQALEDMQDVLKELSVTVDVTDPAEMRKILASAIGTKFISKWLELACDMAIKAVAT
VAIEDKTTGLREIDIKRYAKVEKVPGGTLEDSCVLQGVMLNKDVTHPRMRRRIEKPRILL
LDCPLEYTKGESQTDIELSKENDFNRILQLEEEYIRRITSDIIAFKPDVVFTEKGISDLA
QHFLVKANITGIRRVRKSDNNRIGRACGATVCSRTDEIREEDLGTGAGLFEIRKFGDEYF
TFVTECKDPKACTILLRGASKDILMEVERNLQDAMQVARNVMVDPRLVPGGGAVELAVAH
KLTEKSKTMTGVEQWPYRAVAQSLEVIPRTLIQNCGASTIRTITALRAKHTSAGNITWGV
NGETGEICDMKVLDIWEPLSVKVQTYKTAMETAMLLLRIDDIVSGLKKQEK
Nucleotide sequence
Length: 2,519
>Harore.CG.MTP2014.S108.g02133.01.t
AGACATATTATTTTGCGAAGCTGTTCGGCACTTTTGTCAGATTTTCTATCTTGGCGGTTG
GAAATGATAGAGACCTGCAATCCTTCTGTTGATCCTATCTGTCGAAGCACATGCTGATCA
TCTTGAATTTCTAAAGTCTAACATTCATTTTTAGCCGATCAAAAAATACGGAATATTCGT
CATGTCTGCTCCAGTTTTAGTTCTCAATCAAAATACGAAGCGCGAGTCTGGAAAGAAGGT
TCAGCTTGGAAATGTGAACGCTGCCAAGACTATCGCTGATGTCATTCGAACATGTTTAGG
TCCACGATCCATGATGAAGATGTTGATGGACCCACAAGGTGGAATCGTCATGACCAACGA
TGGAAATGCGATTCTACGTGAAATCCAGGTTCAACACCCGGCAGCGAAATCAATGATTGA
AATCAGTCGGACACAGGATGAGGAAGTTGGAGATGGAACCACCTCTGTCATCATACTGGC
TGGTGAAATGATGTCAGTCGCTGAGCAATTCCTTGTGCAAAAAATGCATCCAACAGTTAT
AATTGGTGCTTATCGTCAAGCTTTGGAAGACATGCAAGATGTTTTGAAAGAACTGAGCGT
TACAGTAGATGTGACTGATCCTGCAGAAATGCGAAAGATACTTGCAAGCGCTATTGGAAC
AAAATTCATTAGCAAGTGGCTGGAACTAGCTTGCGACATGGCGATCAAAGCCGTTGCCAC
TGTGGCAATCGAAGACAAGACGACCGGACTGAGGGAAATTGATATAAAGAGATATGCCAA
AGTGGAAAAGGTACCTGGAGGAACTTTGGAAGATTCGTGTGTGCTTCAAGGTGTGATGCT
GAACAAAGACGTCACTCATCCCAGAATGCGTAGACGTATCGAGAAGCCGAGAATTCTCTT
GTTGGATTGTCCTCTGGAATATACCAAGGGAGAGAGTCAGACCGATATAGAACTGAGCAA
GGAAAATGACTTCAACCGAATTCTCCAGCTTGAAGAGGAATACATTCGCCGTATCACGTC
GGATATCATCGCTTTCAAACCCGATGTTGTATTCACTGAAAAGGGAATTTCAGATTTGGC
ACAACACTTCCTAGTGAAAGCTAACATTACCGGCATTCGCAGAGTGCGAAAGTCCGACAA
TAATCGTATCGGACGTGCTTGTGGCGCCACTGTGTGCTCAAGAACTGATGAGATTCGAGA
GGAAGACCTTGGAACAGGTGCTGGGCTGTTTGAAATTCGCAAATTTGGAGACGAATACTT
CACGTTCGTGACAGAATGCAAAGATCCTAAAGCTTGCACGATTCTTCTCAGAGGAGCAAG
CAAAGACATCTTAATGGAGGTTGAAAGAAACCTGCAGGATGCCATGCAAGTCGCTAGAAA
TGTGATGGTGGATCCCAGACTGGTTCCAGGAGGTGGTGCTGTTGAGTTGGCTGTAGCTCA
TAAATTAACTGAAAAATCAAAAACCATGACAGGCGTGGAACAGTGGCCGTATCGTGCCGT
AGCTCAATCCCTTGAAGTGATTCCAAGAACATTGATTCAGAATTGTGGAGCTAGCACGAT
CCGTACTATCACTGCATTGCGGGCTAAGCATACTTCTGCAGGAAATATAACTTGGGGTGT
CAATGGTGAAACAGGAGAAATATGTGACATGAAGGTTCTGGATATCTGGGAGCCACTCTC
GGTCAAAGTTCAGACCTATAAGACGGCAATGGAGACGGCAATGCTGCTCTTACGTATCGA
TGACATCGTATCTGGCTTGAAGAAGCAGGAGAAATAAGACCATTGCATGTAGGAAATTTG
ACTGTGATGTCCTTCAACATTATGTGTGAGTTTGGCAACTGGATGATCAGCACCTTTTGC
TGTTTCATGGTAACATTTTTGATCTTGTTTTTTCACGATTTAAGCGCTAGTTCACTGACG
ACATTTTCAAGTTTATGTATCGGAGTTGTTCCTTGATATAGTTGTGCATGGTTGCTTGTA
TTAAAATTTTCTACCATGTATTTAAAGGTCATACAACCACAGAGGCTAGTAGCTTGAGCA
AAGGCTGATAACATATGTGATATTAACTAGTCTTAGGCGATGAAACAACAAATAAACAAA
CTATCTATTTACAGCAAGTGTTTATTAGTAAGATGGTTGTTAATAACTGTAGTTACATGG
TGATTGTAAGTCAAATTCGGAATTAACATCGTAGCATAAAAGTCTGGTAGACAAAAAAAT
AAAAGAAAGTACTCCGTGATCGATCTGTAACCTGTACAGAACGAGAGGATGAAAGTGGAA
TGAAATAGTAAAGCTATAAAATATAAAAATAATCCTTTAAATTCTAAATTCTGGGAATGA
GTCCGAAATAATTTTGCAACGGTATCATCTATCATGACAAAGGGAGCTTGGTTTTGGGTT
TCTGCCTTGAACACTTCCAGATTTTTATATGATCAGAAAAATGAATTCTCGTAAGGCAGT
GATAGGATTCAACTGGGGTTCGCACCGGTCATCAAAAACCGGTTACTAAAATTACAAAA
| TIGRFAM |
Chap_CCT_gamma (IPR012719) - T[4-529] 1.0E-278 |
| CDD |
Chap_CCT_gamma (IPR012719) - T[4-525] 0.0 |
| PANTHER |
Cpn60/TCP-1 (IPR002423) - T[7-529] 1.6E-285 |
| SUPERFAMILY |
GROEL-like_equatorial_sf (IPR027413) - T[13-142] 1.57E-85 - T[405-525] 1.57E-85 |
| Gene3D |
GROEL-like_equatorial_sf (IPR027413) - T[24-141] 7.4E-180 - T[405-522] 7.4E-180 |
| Pfam |
Cpn60/TCP-1 (IPR002423) - T[31-524] 2.9E-162 |
| PRINTS |
Chaperone_TCP-1 (IPR017998) - T[33-49] 1.6E-28 - T[55-73] 1.6E-28 - T[85-104] 1.6E-28 - T[373-395] 1.6E-28 - T[407-419] 1.6E-28 |
| ProSitePatterns |
Chaperonin_TCP-1_CS (IPR002194) - T[36-48] . - T[57-73] . - T[85-93] . |
| Gene3D |
TCP-1-like_intermed_sf (IPR027410) - T[142-215] 7.4E-180 - T[369-404] 7.4E-180 |
| SUPERFAMILY |
TCP-1-like_intermed_sf (IPR027410) - T[142-215] 1.95E-24 - T[369-404] 1.95E-24 |
| SUPERFAMILY |
GroEL-like_apical_dom_sf (IPR027409) - T[211-378] 9.94E-54 |
| Gene3D |
GroEL-like_apical_dom_sf (IPR027409) - T[216-368] 7.4E-180 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TCPG_HUMAN | 75.475 % | 835 | 0 |
| TCPD_HUMAN | 34.236 % | 294 | 2.59E-93 |
| TCPE_HUMAN | 33.524 % | 290 | 1.5E-91 |