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TRANSCRIPT CARD

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  1. Clone 'AHC0AAA176YF19'
  2. Clone 'AHC0AAA207YN14'
  3. Clone 'AHC0AAA258YF22'
  4. Clone 'AHC0AAA146YJ23'
  5. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S108.g02133.01.t

Possible name(s)

CCT3; CCT4; CCT5

Location

S108 [23,250 / 28,295]

Sequences

Amino acid sequence

Length: 531

>Harore.CG.MTP2014.S108.g02133.01.p
MSAPVLVLNQNTKRESGKKVQLGNVNAAKTIADVIRTCLGPRSMMKMLMDPQGGIVMTND
GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMMSVAEQFLVQKMHPTVI
IGAYRQALEDMQDVLKELSVTVDVTDPAEMRKILASAIGTKFISKWLELACDMAIKAVAT
VAIEDKTTGLREIDIKRYAKVEKVPGGTLEDSCVLQGVMLNKDVTHPRMRRRIEKPRILL
LDCPLEYTKGESQTDIELSKENDFNRILQLEEEYIRRITSDIIAFKPDVVFTEKGISDLA
QHFLVKANITGIRRVRKSDNNRIGRACGATVCSRTDEIREEDLGTGAGLFEIRKFGDEYF
TFVTECKDPKACTILLRGASKDILMEVERNLQDAMQVARNVMVDPRLVPGGGAVELAVAH
KLTEKSKTMTGVEQWPYRAVAQSLEVIPRTLIQNCGASTIRTITALRAKHTSAGNITWGV
NGETGEICDMKVLDIWEPLSVKVQTYKTAMETAMLLLRIDDIVSGLKKQEK

Nucleotide sequence

Length: 2,519

>Harore.CG.MTP2014.S108.g02133.01.t
AGACATATTATTTTGCGAAGCTGTTCGGCACTTTTGTCAGATTTTCTATCTTGGCGGTTG
GAAATGATAGAGACCTGCAATCCTTCTGTTGATCCTATCTGTCGAAGCACATGCTGATCA
TCTTGAATTTCTAAAGTCTAACATTCATTTTTAGCCGATCAAAAAATACGGAATATTCGT
CATGTCTGCTCCAGTTTTAGTTCTCAATCAAAATACGAAGCGCGAGTCTGGAAAGAAGGT
TCAGCTTGGAAATGTGAACGCTGCCAAGACTATCGCTGATGTCATTCGAACATGTTTAGG
TCCACGATCCATGATGAAGATGTTGATGGACCCACAAGGTGGAATCGTCATGACCAACGA
TGGAAATGCGATTCTACGTGAAATCCAGGTTCAACACCCGGCAGCGAAATCAATGATTGA
AATCAGTCGGACACAGGATGAGGAAGTTGGAGATGGAACCACCTCTGTCATCATACTGGC
TGGTGAAATGATGTCAGTCGCTGAGCAATTCCTTGTGCAAAAAATGCATCCAACAGTTAT
AATTGGTGCTTATCGTCAAGCTTTGGAAGACATGCAAGATGTTTTGAAAGAACTGAGCGT
TACAGTAGATGTGACTGATCCTGCAGAAATGCGAAAGATACTTGCAAGCGCTATTGGAAC
AAAATTCATTAGCAAGTGGCTGGAACTAGCTTGCGACATGGCGATCAAAGCCGTTGCCAC
TGTGGCAATCGAAGACAAGACGACCGGACTGAGGGAAATTGATATAAAGAGATATGCCAA
AGTGGAAAAGGTACCTGGAGGAACTTTGGAAGATTCGTGTGTGCTTCAAGGTGTGATGCT
GAACAAAGACGTCACTCATCCCAGAATGCGTAGACGTATCGAGAAGCCGAGAATTCTCTT
GTTGGATTGTCCTCTGGAATATACCAAGGGAGAGAGTCAGACCGATATAGAACTGAGCAA
GGAAAATGACTTCAACCGAATTCTCCAGCTTGAAGAGGAATACATTCGCCGTATCACGTC
GGATATCATCGCTTTCAAACCCGATGTTGTATTCACTGAAAAGGGAATTTCAGATTTGGC
ACAACACTTCCTAGTGAAAGCTAACATTACCGGCATTCGCAGAGTGCGAAAGTCCGACAA
TAATCGTATCGGACGTGCTTGTGGCGCCACTGTGTGCTCAAGAACTGATGAGATTCGAGA
GGAAGACCTTGGAACAGGTGCTGGGCTGTTTGAAATTCGCAAATTTGGAGACGAATACTT
CACGTTCGTGACAGAATGCAAAGATCCTAAAGCTTGCACGATTCTTCTCAGAGGAGCAAG
CAAAGACATCTTAATGGAGGTTGAAAGAAACCTGCAGGATGCCATGCAAGTCGCTAGAAA
TGTGATGGTGGATCCCAGACTGGTTCCAGGAGGTGGTGCTGTTGAGTTGGCTGTAGCTCA
TAAATTAACTGAAAAATCAAAAACCATGACAGGCGTGGAACAGTGGCCGTATCGTGCCGT
AGCTCAATCCCTTGAAGTGATTCCAAGAACATTGATTCAGAATTGTGGAGCTAGCACGAT
CCGTACTATCACTGCATTGCGGGCTAAGCATACTTCTGCAGGAAATATAACTTGGGGTGT
CAATGGTGAAACAGGAGAAATATGTGACATGAAGGTTCTGGATATCTGGGAGCCACTCTC
GGTCAAAGTTCAGACCTATAAGACGGCAATGGAGACGGCAATGCTGCTCTTACGTATCGA
TGACATCGTATCTGGCTTGAAGAAGCAGGAGAAATAAGACCATTGCATGTAGGAAATTTG
ACTGTGATGTCCTTCAACATTATGTGTGAGTTTGGCAACTGGATGATCAGCACCTTTTGC
TGTTTCATGGTAACATTTTTGATCTTGTTTTTTCACGATTTAAGCGCTAGTTCACTGACG
ACATTTTCAAGTTTATGTATCGGAGTTGTTCCTTGATATAGTTGTGCATGGTTGCTTGTA
TTAAAATTTTCTACCATGTATTTAAAGGTCATACAACCACAGAGGCTAGTAGCTTGAGCA
AAGGCTGATAACATATGTGATATTAACTAGTCTTAGGCGATGAAACAACAAATAAACAAA
CTATCTATTTACAGCAAGTGTTTATTAGTAAGATGGTTGTTAATAACTGTAGTTACATGG
TGATTGTAAGTCAAATTCGGAATTAACATCGTAGCATAAAAGTCTGGTAGACAAAAAAAT
AAAAGAAAGTACTCCGTGATCGATCTGTAACCTGTACAGAACGAGAGGATGAAAGTGGAA
TGAAATAGTAAAGCTATAAAATATAAAAATAATCCTTTAAATTCTAAATTCTGGGAATGA
GTCCGAAATAATTTTGCAACGGTATCATCTATCATGACAAAGGGAGCTTGGTTTTGGGTT
TCTGCCTTGAACACTTCCAGATTTTTATATGATCAGAAAAATGAATTCTCGTAAGGCAGT
GATAGGATTCAACTGGGGTTCGCACCGGTCATCAAAAACCGGTTACTAAAATTACAAAA

InterProScan

TIGRFAM
Chap_CCT_gamma (IPR012719) - T[4-529] 1.0E-278
CDD
Chap_CCT_gamma (IPR012719) - T[4-525] 0.0
PANTHER
Cpn60/TCP-1 (IPR002423) - T[7-529] 1.6E-285
SUPERFAMILY
GROEL-like_equatorial_sf (IPR027413) - T[13-142] 1.57E-85 - T[405-525] 1.57E-85
Gene3D
GROEL-like_equatorial_sf (IPR027413) - T[24-141] 7.4E-180 - T[405-522] 7.4E-180
Pfam
Cpn60/TCP-1 (IPR002423) - T[31-524] 2.9E-162
PRINTS
Chaperone_TCP-1 (IPR017998) - T[33-49] 1.6E-28 - T[55-73] 1.6E-28 - T[85-104] 1.6E-28 - T[373-395] 1.6E-28 - T[407-419] 1.6E-28
ProSitePatterns
Chaperonin_TCP-1_CS (IPR002194) - T[36-48] . - T[57-73] . - T[85-93] .
Gene3D
TCP-1-like_intermed_sf (IPR027410) - T[142-215] 7.4E-180 - T[369-404] 7.4E-180
SUPERFAMILY
TCP-1-like_intermed_sf (IPR027410) - T[142-215] 1.95E-24 - T[369-404] 1.95E-24
SUPERFAMILY
GroEL-like_apical_dom_sf (IPR027409) - T[211-378] 9.94E-54
Gene3D
GroEL-like_apical_dom_sf (IPR027409) - T[216-368] 7.4E-180

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TCPG_HUMAN 75.475 % 835 0
TCPD_HUMAN 34.236 % 294 2.59E-93
TCPE_HUMAN 33.524 % 290 1.5E-91