- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S10.g01481.01.t
Possible name(s)
VPS11
Gene model
Location
S10 [427,993 / 436,055]
Amino acid sequence
Length: 973
>Harore.CG.MTP2014.S10.g01481.01.p
MALIQWRRFNFFNKETVEIDAGGKTLDSIKSAHFQCCACGRGLLIFGDSNGVIHLVNHNF
QVVSFSAYQFGVSHLFQVKQHNVLASVGIDDEGINPVIKVWNMDKKDKAGNPFCSRIQPA
ILNNTPTEVSVFSVLSNLTMMATGFAQGLIALFKGDVLKDRHGNKTISLSTDQSGPVTGL
SFQTIDKSNYLFATTHTSILSFALAEKNPKMFVLDQIRGCSMFCSTLADKVLDTQFIVAA
SDAVYAYQPDSRGPCFVFDGDKIMTHWYHGYLIIVYKDKTRIASSSSGDPYHLSFVSALR
PHAEKNMVTIYDMNQKLIAYSSAIPGVKFILYEWGSLYVLTFDNVLVCLQEIDIHSKLEM
LFKKNHYSLAVNMAKNQNLGEEGLMEIFTQYGNHLYSKGDFDDAILQYVKTIGYLEPSYV
IRKFLDAQRIHNLTTYLQALHENGSANEDHTTLLLNCFTKLKDSENLNKFIMTPEAKLKF
DVETAIRVCRQAGYYEHALKLADKHLKHTWYLKIQLENTKNYEKALQYIRKLPYTEAECN
MKKYGKELMDHVPDKTTELLKDLCTDYHPSDMLLVEHSQYDGYDEREQNRANGEEFIHIF
VNNSEMLVTFLQHMIKMEPRSSELVYNTLLELYLHQMVRCQDAKERSSIEDQTLELLKEF
SSLDYDTDQALVLCQMHNFRPGILFLYESAALYQQILKYHMDHEAYGLVVETCRKHGAKD
PSLWQHALTFFAQQHDVDCKDHIMQVLSHILFICSVHIDKNNLLPPLLVIQLLSRNSTVT
LAVVKDFILRRLQKETEEIEKHEKAIQEYREETKKMKDQINELQTSATIFQVTKCSLCSH
DLELPSVHFLCQHSYHQHCFESYAENDQECPVCAGGNRKILDHIREQEQALMNNRTLYEQ
FTSHIRNSKDGFSVVADYFSRGVFNKVSPTTETSVRGNPESMNPFDEPSSTANSLIDPTL
QEELYMMQRSNRY
Nucleotide sequence
Length: 3,843
>Harore.CG.MTP2014.S10.g01481.01.t
AATCAGATGATCTGCACCTTGCAGGGTTTTGGAACCACTGTCATTTTGGTAGAATTTTAG
GTTAAATTAGTGTAATTCTTGTGGATCTTTGAGATGTTTTGATCTCATGCAAAAGAATCT
CTATCCCTAATCGACTACCACCAGCATTAATCCATCAGTTATGGCGTTAATACAGTGGCG
TAGATTCAATTTCTTCAACAAAGAAACTGTTGAAATCGATGCAGGTGGAAAAACCTTGGA
TTCAATTAAAAGTGCTCATTTCCAGTGTTGCGCTTGCGGTCGAGGGCTTCTCATATTCGG
AGATTCTAATGGTGTAATTCATCTGGTGAACCATAATTTTCAAGTGGTTTCATTTAGTGC
TTATCAGTTTGGAGTTTCTCACTTATTTCAAGTGAAGCAGCATAACGTCTTGGCTTCAGT
GGGGATTGATGATGAAGGCATTAATCCAGTCATCAAGGTATGGAACATGGATAAAAAGGA
TAAAGCTGGTAATCCATTCTGTTCAAGAATTCAACCTGCTATTCTCAATAACACCCCTAC
TGAAGTTTCGGTGTTTTCTGTACTTTCCAATTTGACAATGATGGCTACAGGGTTTGCTCA
AGGGTTGATTGCTTTGTTTAAAGGAGATGTGTTGAAAGACAGGCATGGAAACAAAACTAT
CTCCTTAAGCACAGACCAGTCTGGTCCAGTGACTGGTCTCAGTTTCCAGACAATAGACAA
GTCGAACTATTTGTTCGCGACAACTCACACCAGTATTCTTTCGTTTGCCCTGGCAGAGAA
AAATCCAAAGATGTTTGTATTGGACCAAATCCGTGGTTGTTCGATGTTCTGCAGTACTCT
GGCAGATAAAGTGCTTGATACCCAATTCATAGTTGCTGCTAGCGATGCTGTTTATGCTTA
TCAGCCGGATTCTCGCGGTCCCTGCTTTGTATTTGATGGCGATAAAATCATGACACACTG
GTACCATGGTTATTTGATAATTGTCTACAAGGATAAAACAAGAATTGCATCTTCTTCCAG
TGGTGATCCTTATCACCTTTCTTTCGTTAGTGCTCTAAGACCACACGCTGAAAAGAATAT
GGTGACCATTTATGACATGAATCAGAAATTGATAGCATATTCCAGTGCTATACCAGGAGT
CAAATTCATTCTTTACGAATGGGGCTCGTTGTACGTCCTCACGTTTGACAATGTGTTGGT
ATGCTTGCAGGAGATCGACATTCACAGTAAATTAGAGATGCTGTTCAAGAAAAATCATTA
TTCACTTGCTGTGAACATGGCAAAAAATCAAAATCTTGGAGAAGAGGGACTGATGGAAAT
TTTTACTCAGTATGGAAACCACTTGTACAGCAAGGGTGACTTTGACGATGCCATCCTACA
GTATGTTAAGACTATCGGATATCTTGAGCCATCTTATGTTATCAGAAAGTTCCTTGATGC
TCAGCGAATCCACAATTTGACAACATATTTACAGGCTTTGCACGAGAATGGAAGTGCCAA
CGAAGATCACACCACACTGCTCTTAAATTGTTTTACCAAGCTCAAAGACAGTGAAAACCT
GAACAAATTTATCATGACTCCAGAAGCAAAACTGAAATTTGATGTTGAAACGGCAATACG
AGTGTGTAGGCAAGCAGGTTACTATGAACATGCATTGAAGCTGGCAGACAAGCATTTGAA
ACACACTTGGTATTTGAAAATACAGCTTGAAAACACAAAAAATTATGAGAAAGCTTTGCA
GTACATTAGAAAGCTGCCATACACAGAGGCTGAATGTAACATGAAAAAATATGGGAAAGA
ACTGATGGATCATGTTCCAGACAAAACCACAGAACTGTTGAAGGATCTATGTACTGATTA
TCATCCAAGTGATATGCTGTTGGTTGAGCATTCTCAATATGATGGCTACGATGAAAGGGA
GCAGAATCGTGCCAATGGTGAAGAGTTTATTCACATTTTTGTTAACAACTCAGAAATGTT
GGTTACGTTTCTGCAACACATGATTAAGATGGAGCCCCGTTCCTCTGAACTTGTCTACAA
CACTCTACTGGAGCTCTATCTTCATCAGATGGTTCGGTGCCAAGATGCAAAGGAACGAAG
TTCCATTGAAGATCAGACATTAGAATTGCTCAAGGAATTCTCATCTCTTGATTACGACAC
TGATCAGGCGCTAGTTCTTTGTCAGATGCATAACTTCCGGCCAGGAATCCTCTTCCTTTA
TGAATCAGCTGCTCTATACCAGCAGATACTGAAGTATCATATGGACCATGAAGCCTATGG
TTTGGTTGTTGAAACTTGCAGAAAACATGGTGCCAAAGATCCATCGCTTTGGCAACACGC
CCTAACTTTTTTCGCTCAACAGCATGATGTCGATTGCAAAGATCATATTATGCAAGTTCT
TAGTCATATCCTTTTTATTTGTTCCGTACATATTGACAAGAATAACTTGCTTCCTCCATT
GCTTGTGATCCAGTTGTTATCAAGAAACTCGACAGTCACTCTTGCTGTAGTCAAGGATTT
TATTTTGCGGCGGCTGCAGAAGGAAACGGAAGAGATAGAGAAACACGAAAAAGCAATCCA
GGAATATCGAGAGGAGACAAAAAAGATGAAAGATCAAATTAATGAGTTACAGACTAGTGC
TACCATTTTCCAAGTTACAAAGTGCAGTCTATGCAGCCATGACCTCGAGCTTCCTTCTGT
GCATTTTCTTTGCCAGCATTCTTATCATCAACATTGCTTCGAAAGTTATGCTGAAAATGA
TCAAGAATGTCCCGTATGCGCTGGTGGAAATCGAAAAATTCTTGACCATATACGTGAGCA
GGAGCAGGCATTGATGAACAACCGTACTCTGTATGAACAATTCACGTCTCACATACGTAA
TTCGAAAGACGGATTTTCTGTCGTTGCTGATTATTTTTCTCGTGGCGTTTTCAATAAGGT
TTCCCCTACTACTGAGACTTCGGTAAGAGGCAACCCAGAATCTATGAACCCATTCGATGA
GCCTTCGTCAACAGCGAACAGTCTTATCGATCCCACTTTGCAAGAGGAACTCTATATGAT
GCAACGTTCCAATCGTTATTGATTAGAGGTAACAGTTGGTGAAGCACCTGCGAGTTCTTT
ACAATGCACCATTGTTCACTTTCTTGATATTTTATGTTCTTTATGACCATCACTAGCATG
TTTTCTGGTTACAATTGAAGCACGAAGATTACTTTGTATAATATATATCAGAGAAGGGTT
GGTTTTTATAATTAATAACTGTTTGTTTTATTTCGATACAATTTGGTTATAAGCTGACAG
CTACTATCTAACCCAATGGAAGTTCTCCAATCTTTTAAATGAGTTACATTTTTTCCTATA
ACCTCTATTCAATTCTCATCTTACTTTATGTAGTTTTTCTTTCCTCATCAGATGATCTCA
ATAAAAAATCCCAGCTAATTTGTAAGCTACCCCATTTCCTCGATCACAATCATATAACCT
ATATATATATAATTTTGACATTTCTAGACACGTGAAGGAAGTGTCTCATGTAAGCTAGCA
GTAGATCGTGAATTGTTTTTTTGAATTTGTTCGGACTTAACATCATGTTAAATTTGATTG
TTTATCCGAGTGATTAGTCGGAGGGTATATTCAGTGAATTCTTAGCCAATGAGAGGAAAT
GTATGCCTGGTAACAAACAAAAATAAATATGGAAAAGGATAGGCCTTCCTAGTTTACTTC
TTGGTTCAATTTCCTGTGCAATATAAAATGAATCTTTGTATGTTGCTTTGAATCCATTAG
CATAATGTTAAGAAAACATGAAGAATAATCCACTTGTACTGGAAATATATACACATTAAT
CAC
| PANTHER |
VPS11 (IPR016528) - T[1-933] 0.0 |
| PIRSF |
VPS11 (IPR016528) - T[1-595] 1.0E-177 - T[576-932] 1.7E-96 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[35-188] 4.89E-9 - T[235-334] 4.89E-9 |
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[342-639] 6.6E-10 |
| ProSiteProfiles |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[408-557] 29.349 - T[580-740] 18.897 |
| Pfam |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[416-532] 2.5E-11 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[788-904] 1.7E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[835-873] 10.468 |
| Pfam |
VPS11_C (IPR024763) - T[877-925] 1.9E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS11_HUMAN | 48.832 % | 952 | 0 |