- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S10.g01578.01.t
Possible name(s)
FRMD1; FRMD6; PTPN13
Gene model
Location
S10 [187,816 / 195,200]
Amino acid sequence
Length: 975
>Harore.CG.MTP2014.S10.g01578.01.p
MRSAASSKKPVRVHMLNKQSIVLVFETKATIQQLFDQICSMLSIKETQFFGVSTLVENEK
RFMDMKQRISRYAPKNWGKELHRKSSDVIIASSCVLNVQFQVQFYVEHAKLICDTASRYN
YYLQIKWNFLRSQVLAQDEILFTLASHALQADLGDLNPEIHRKNYFNVQDYFPAWFIEKW
GTEYLLSHLPTLHAEHKGMTGFESQAHYINQALAIVDVPMHFYKLYKNKKETKSSVVLGI
FHQGIRIHHCKPGSGQGPWKLELEFMWSKVGRLFFTGRKFEIYPEGLPASRKLVYYTGSH
SRSKYLLSLLRATHTLYTSLSPYAQHMRRVDGRRTNRKYRESYISGKDLERSVDERDNDD
NLHESTPCESEQSHDKKFKSHYSTTSHGSSHTSGIESDVRQRTDEGFSQDDMDSYQSKQF
VQVTEDHLVGPRSKCLSVSDLAYHSFGDREKKQNGKPDEIVLDPEQPCTTTISELDTSKK
SKIPSFNSCTESKPRSHDLLGKKTSTTLSVDEGAFFIENSEDINQDENALEEGEANSPYH
LSRYPTLPPSVPQRKLEQEPKLEKKNSSQMSKKSLKNTEPVKLAIVGSNVRVENHKKTNG
TVYYDDIHTLPHQTISRDIKDNVWVNDTYVFHPKGTHCKERRESEQRHKVSQDTHPVHAK
RSSSSHRKHSDETHHISQVSQRRHHLSSPDLLDRSEENPRHSRSHRTQRRSSGKELAQSG
NPNYSKCYLNHPKAQQKIKIDENRSFVPIVIAHRTHVSQHSSFTTATTTRPEKKAFRAPQ
AYYTVARTTSCDNVGYYNSHSNMNTSAVRKPNVNPPPVNIYDQKGISYRVQTIPIVYNMG
ADPMQSYTESFDSMHAENAITSSTEDIHSPKKMSEACMRTLSAQRKQKNSKIRQRESQAT
SEKSFHSQSGNAGSHLTGEDTTPRTPESKSAFFVDLLRTPYLENYTGVIEMKWILANVPL
SEGCVTLFHKSHARP
Nucleotide sequence
Length: 3,728
>Harore.CG.MTP2014.S10.g01578.01.t
AGTATTATGTGAAAAATCTTATTTCGAGCATCATGGGAAATAAGCGTACAGTTTTGTAAT
CATTATCAGCCAATGTGTAATGTTTTGACAAGTTATGTGTCTGAAATTCATCACCAGAGA
GTTGTAAACTGAAACAATGAGGTCAGCGGCATCCAGCAAGAAGCCTGTTCGGGTGCATAT
GCTGAACAAGCAGTCAATCGTCCTAGTGTTTGAGACAAAAGCTACCATTCAGCAATTGTT
TGATCAAATATGTTCTATGCTTTCGATAAAAGAGACTCAATTTTTTGGCGTCTCAACCTT
AGTCGAAAATGAAAAACGTTTCATGGATATGAAGCAGCGTATATCAAGATACGCTCCGAA
AAACTGGGGAAAGGAGCTTCATCGCAAGTCAAGTGATGTCATTATCGCCTCTTCATGCGT
GTTGAACGTACAGTTCCAAGTCCAATTTTATGTAGAACACGCCAAGCTAATATGTGATAC
TGCCTCAAGATATAACTATTACCTCCAAATCAAATGGAATTTTCTGAGATCTCAAGTGCT
GGCACAGGATGAGATTCTTTTCACTCTCGCTTCCCACGCCTTGCAAGCAGACTTGGGAGA
CCTCAATCCTGAAATTCACCGCAAAAATTACTTCAATGTTCAAGATTATTTTCCTGCATG
GTTCATTGAAAAGTGGGGAACTGAGTACCTGCTGTCTCATCTGCCAACTCTGCATGCTGA
ACACAAAGGAATGACTGGCTTTGAATCTCAGGCCCATTACATTAACCAAGCTTTGGCTAT
CGTAGACGTTCCGATGCATTTTTACAAATTGTATAAGAACAAAAAGGAAACCAAGTCGAG
TGTGGTGCTAGGAATATTTCACCAGGGAATCAGGATTCATCACTGCAAGCCTGGTTCTGG
GCAAGGACCCTGGAAGTTGGAACTAGAATTCATGTGGAGCAAAGTGGGACGACTATTTTT
CACTGGAAGGAAATTTGAAATCTACCCAGAGGGACTGCCTGCCAGCAGAAAACTGGTTTA
TTATACGGGCAGCCATTCGCGATCGAAATACCTTCTCAGCTTGTTGCGAGCAACACACAC
TCTTTATACCAGCTTGTCTCCGTATGCACAACACATGAGAAGAGTGGATGGAAGAAGAAC
GAATCGAAAGTATCGAGAATCATACATTAGTGGAAAAGATCTTGAAAGAAGTGTAGATGA
GAGAGACAATGACGACAATCTCCATGAAAGTACACCATGTGAATCTGAACAAAGCCATGA
TAAGAAATTTAAATCGCATTATTCAACGACAAGTCATGGTAGTTCACACACTTCCGGCAT
TGAGAGCGATGTAAGGCAGCGAACAGATGAAGGCTTTAGTCAAGATGATATGGATTCTTA
TCAGAGTAAGCAATTCGTCCAGGTTACAGAAGATCATCTTGTCGGCCCACGATCAAAATG
CCTAAGCGTGAGTGATTTGGCCTATCACTCATTTGGAGATAGAGAGAAGAAACAAAATGG
AAAACCTGATGAAATTGTACTGGATCCAGAGCAACCTTGTACTACAACCATCTCTGAACT
TGACACCTCAAAGAAAAGCAAAATTCCATCATTCAACTCTTGCACAGAGTCAAAACCAAG
AAGTCATGATTTACTCGGAAAAAAAACCAGTACTACACTTTCGGTAGATGAGGGAGCATT
CTTCATAGAAAATTCTGAGGACATCAATCAAGATGAGAATGCACTTGAAGAAGGTGAAGC
GAATTCTCCATACCACTTAAGTCGCTACCCCACATTGCCCCCAAGTGTACCGCAACGAAA
ATTGGAGCAGGAGCCTAAGTTAGAGAAGAAAAACAGTTCACAAATGTCAAAAAAGAGCTT
GAAAAATACAGAACCTGTTAAATTGGCTATTGTTGGAAGCAATGTACGAGTGGAAAACCA
TAAAAAAACAAATGGGACAGTGTACTACGATGACATTCACACGCTGCCTCATCAAACTAT
TTCGAGGGATATCAAAGACAATGTGTGGGTCAATGACACATACGTTTTCCACCCGAAAGG
AACACACTGCAAGGAAAGAAGGGAGTCAGAGCAAAGACATAAGGTCTCGCAGGATACACA
CCCTGTACATGCTAAAAGATCGTCTTCTTCCCACCGAAAACACAGCGACGAAACACACCA
TATTTCACAAGTTTCACAAAGACGTCATCACCTCTCAAGTCCCGACTTGTTAGACAGAAG
TGAAGAAAATCCTAGGCATTCTCGTTCACATCGTACACAGCGCCGCTCATCTGGTAAAGA
ATTAGCACAGTCGGGGAATCCAAATTATTCCAAATGTTATCTGAATCACCCAAAAGCTCA
GCAGAAAATCAAGATCGACGAAAATCGATCATTTGTGCCAATTGTCATCGCTCATCGGAC
GCATGTATCTCAACACAGCTCTTTCACTACTGCGACTACTACACGACCAGAAAAGAAAGC
ATTTCGCGCTCCTCAAGCCTACTACACGGTAGCTCGTACGACATCATGCGACAACGTAGG
ATATTACAATTCCCATTCGAACATGAATACTAGCGCTGTTAGAAAGCCAAACGTAAATCC
ACCACCTGTTAATATATATGACCAGAAAGGTATTTCTTACAGAGTGCAGACCATTCCTAT
CGTGTACAATATGGGAGCAGACCCCATGCAATCATACACCGAAAGTTTTGATTCTATGCA
CGCTGAAAACGCTATCACGTCATCCACAGAAGATATTCATTCCCCTAAGAAAATGAGCGA
GGCGTGTATGAGGACGCTTTCAGCTCAAAGAAAGCAAAAAAATTCAAAAATACGACAGCG
TGAGAGTCAGGCAACGTCAGAAAAGAGTTTTCACAGCCAGTCAGGAAATGCTGGTTCCCA
CCTGACCGGCGAGGATACAACGCCACGCACACCTGAGTCGAAGTCGGCGTTTTTTGTAGA
CCTGCTTCGTACACCATACCTTGAAAACTATACTGGTGTCATTGAGATGAAATGGATATT
GGCGAATGTTCCTCTGTCGGAAGGTTGCGTGACATTGTTTCACAAATCTCACGCAAGACC
CTGAAAAAAAACTACTGATAGTAGACACGTAGGGTGCAGCAGTTTATTGGACTGTAGGAA
ATAAAATACACGAAGGTGCAGAAGCCATCGCTTGAGTTTTTCTGATACAGCTCATTTTAT
TTATGAAGCAGTAGATCATTTCTTACTTCGTGAAATTACCTTTTTCAGTACTTTTATTTC
CACACATCTCTTTTTTTTATAAATGAAATTATTGCATTGCAGTAATGTATTAAGTGCCAT
CAAGTAACAATTTAATTCTAGTCTGACGTTAGTAGACGTTGTACAGTAGGTAATATGCAG
CGGAGATATTTTTAACTTCGTAAATGAAAACCTTTTTTTGTAATTAATGTTGTTTCGTGA
TTCAAGTTGGTACCAAACAAATTGCCGAATCCTCTTGCCAGCAGTATGGGAGTAGAAATT
ATTGCGTTATACCACCCTTTTACACCATCACGCTAATGGTATAGTTAGTACATGTACCAT
TTTTTTTACCTCGTCAAGCTTTTTTATCATTGAAACGAGTAAGCCTAATTGTGTATTCTG
TATTTTGTACTATTTTTAAACAATAATAAAACCTCTAATATGAAAAGGAGAAATTGGCGA
AGTCGAAAATGTTCGATTCACCTGTTTTCTTAGTAGGCCTAATCTAAGATTATTGAAGAT
TAGGAAAA
| SMART |
Band_41_domain (IPR019749) - T[5-226] 1.2E-25 |
| ProSiteProfiles |
FERM_domain (IPR000299) - T[9-321] 50.178 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[10-107] 1.45E-12 |
| Pfam |
FERM_N (IPR018979) - T[13-74] 2.2E-10 |
| Gene3D |
FERM/acyl-CoA-bd_prot_sf (IPR014352) - T[105-214] 1.6E-22 |
| SUPERFAMILY |
FERM_2 (IPR035963) - T[109-212] 2.62E-25 |
| Pfam |
FERM_central (IPR019748) - T[111-222] 1.5E-16 |
| CDD |
FERM_central (IPR019748) - T[117-212] 8.33596E-19 |
| Gene3D |
PH-like_dom_sf (IPR011993) - T[220-317] 8.5E-10 |
| SMART |
FERM_PH-like_C (IPR018980) - T[230-325] 2.3E-13 |
| Pfam |
FERM_PH-like_C (IPR018980) - T[231-320] 2.2E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PTN13_HUMAN | 27.586 % | 131 | 9.22E-31 |
| FRMD6_HUMAN | 33.199 % | 288 | 9.12E-86 |
| FRMD1_HUMAN | 36.74 % | 257 | 2.9E-75 |