- Transcript 'KH2012:KH.C1.1073.v1...' >
- Clone 'ciad016a18' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S10.g15789.01.t
Possible name(s)
DDX42; DDX46; DDX5
Gene model
Location
S10 [590,667 / 597,965]
Amino acid sequence
Length: 1,071
>Harore.CG.MTP2014.S10.g15789.01.p
MRRSVQDQDLRARKKNTPDLILAIRKALLKDQDLNARVQGPGHEIKVAEAAIKNLTRKVK
NENREAQVQKEANEDNKSKSKSTSETKEKSEKRSRRSRSRSRGRKRSHERRSSRNERSRK
KGRYGKHDKEESRDKDKDVVKDPEKKENNKAKDTLSKDFEQARLEEEMKKRKDRVETWRK
EQKLALGQPSQNDDDDAPGGKQWTLDDDDDDDEEEGEREEEKEETVKDENGVEDGRENEK
IDSLEKMEEAEEDEDDPLDAFMSNLKAENDKHMFGNTTENTSGPKISRVVAVAKKKSAHI
KPEKKKGELMEGDADAMEYSSEEEEESLDSALGKFRNKQQGQGRKLDTVIDHSKIQYEDF
CKKFYVEVPELAAMTEEEVDDVRMNLEHIKVRGKNCPKPIRTWAQAGVSYKVLNALKKLN
FEKPTSIQAQALPVIMCGHDMMGIAKTGSGKTLAFVLPMLRHIMDQRPLEDKEGPIAVIM
TPTRELALQITKECKKFTKPMKLKVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLA
ANSGRVTNMRRCTYLVLDEADRMFDMGFEPQVMHIMNSVRPDRQTVMFSATFPRQMEALA
RRILSKPIEVQVGGRSVVCSDVTQHVHILEKDQKYFKLLELLGLYQEQGSILVFVDKQEH
ADRLLKDLMGSSYPCMALHGGIDQYDRDSVINDFKNGITGLLIATSVAARGLDVKNLILV
INYDCPNHYEDYVHRCGRTGRAGSKGFAHTFIVKEQARHAGDIIKALEMSGASVSKELES
LWATYKSDLTAQGKAVSKNSGFTGRGFKFDETEDELVKERKQFQKAALGLHDSDDESPAK
DIDEQIENMFNSKKRVKDVVGPLVLPGAGGESAQGQGGLSGSNIEKLEIAKRLAVRINVK
KNLGAEAQDVTQQAATAILKGGPFQAPKVSAKTIAGQLAEKINQKLNYVPQEKSENDDEE
NPDGQGATFKRYEEELEINDFPQTCRWKVTSKDTLSQISEYSEAGITIRGQYFPSGKQPE
EDERKLYLAIEAVSEMAVQKAKNEITRLIKEELIRLQNSYQPINKGRYKVT
Nucleotide sequence
Length: 3,681
>Harore.CG.MTP2014.S10.g15789.01.t
ATAACGATACCGCAAGGGGTCGATAGAGCGGTATCTTTAAGTTTTATTATTTTGTGACTT
AATCCGTAGCAAACGTGTTCTGTTTTAGACTCCTGAAAAAAGGTTCGAATTCCCTACTTT
GACATAGAGAAATATACTTCCGAATTACATTCATGGAGGTGGACACAACTATCAGTGCAA
CTGTGAATATAAAACAGGAGCCTGTTGAAAAAGATCCTAAATATCAAGGGACAACAGAAG
AGAACAAGAAATCAAGATCTCGCTCCAGATCAAAACAGAAATCCAACATAAGGAATAGAA
ATTATCGCTCTCACCATGAGAAGAAGCGTTCAAGATCAAGATCTCCGGGCTCGAAAAAAA
AATACTCCCGATCTTATTCTCGCCATTCGAAAAGCTCTTCTAAAAGATCAAGATCTAAAC
GCTCGCGTTCAAGGTCCAGGTCACGAGATAAAAGTCGCAGAGGCCGCGATAAAAAATCTC
ACCCGGAAGGTCAAAAACGAAAACAGAGAAGCTCAAGTACAGAAAGAAGCAAATGAAGAT
AATAAAAGTAAATCCAAGTCTACATCTGAAACTAAAGAAAAATCTGAAAAGAGAAGCAGA
AGATCAAGGTCTAGATCAAGAGGAAGAAAAAGGTCTCATGAACGACGTAGTTCAAGAAAT
GAAAGGTCAAGGAAAAAGGGTAGATATGGAAAACACGACAAGGAAGAATCCCGTGACAAA
GATAAGGATGTGGTTAAAGATCCTGAGAAAAAGGAGAATAACAAGGCGAAAGACACATTA
TCGAAGGATTTTGAACAAGCCAGGTTAGAAGAGGAGATGAAAAAGCGAAAGGACAGAGTA
GAAACCTGGAGAAAAGAGCAGAAGCTCGCTCTCGGGCAGCCGTCTCAAAACGATGACGAT
GATGCACCAGGAGGGAAACAATGGACCTTGGATGATGATGACGATGATGATGAGGAGGAG
GGGGAGAGAGAGGAGGAGAAAGAAGAAACCGTGAAGGATGAGAATGGTGTAGAAGATGGA
AGGGAAAATGAAAAGATAGATTCTCTGGAAAAGATGGAAGAGGCTGAAGAAGATGAGGAT
GATCCTCTGGATGCATTCATGAGTAATTTGAAGGCTGAGAATGACAAACACATGTTTGGG
AATACAACAGAAAATACAAGTGGTCCTAAAATCAGCAGGGTGGTGGCAGTAGCAAAGAAA
AAATCAGCGCATATCAAACCAGAAAAGAAGAAGGGAGAATTAATGGAGGGTGACGCTGAT
GCTATGGAATACTCATCAGAGGAAGAGGAAGAATCACTCGACAGTGCCTTGGGTAAATTC
CGAAACAAGCAGCAAGGTCAAGGTCGTAAGCTCGATACTGTCATCGATCACTCAAAAATC
CAATATGAAGATTTTTGCAAGAAGTTTTATGTTGAGGTCCCTGAGCTTGCCGCCATGACG
GAAGAAGAAGTTGATGACGTGAGAATGAATTTGGAACACATCAAAGTTCGTGGAAAGAAC
TGCCCCAAGCCGATTAGAACTTGGGCACAGGCTGGAGTCTCGTATAAAGTACTGAATGCT
CTGAAAAAATTGAATTTTGAAAAACCCACCTCAATACAGGCGCAAGCTCTTCCCGTTATA
ATGTGCGGCCATGACATGATGGGCATAGCAAAAACTGGGAGCGGCAAAACGTTGGCCTTT
GTTTTGCCAATGCTGCGACATATAATGGACCAGAGACCTCTGGAAGATAAAGAGGGTCCG
ATTGCTGTCATCATGACACCCACAAGAGAACTAGCGCTCCAGATCACGAAAGAATGCAAA
AAGTTTACCAAACCTATGAAACTAAAAGTTGTTTGTGTGTATGGCGGGACAGGGATTTCC
GAGCAAATCGCGGAGCTGAAACGTGGTGCCGAAATAATAGTTTGCACTCCGGGAAGAATG
ATTGACATGCTTGCAGCGAACAGCGGCAGAGTTACAAACATGAGAAGGTGTACTTATCTG
GTTTTGGATGAAGCTGATCGTATGTTTGATATGGGTTTTGAGCCACAAGTAATGCACATA
ATGAATTCCGTCAGACCCGACCGACAGACAGTGATGTTTTCTGCCACATTTCCCCGTCAA
ATGGAAGCACTGGCAAGAAGGATACTTAGCAAGCCGATCGAGGTCCAAGTAGGCGGTCGG
AGTGTGGTTTGTTCTGATGTCACCCAACATGTTCACATACTTGAGAAAGACCAAAAATAC
TTCAAACTATTAGAGTTGCTCGGACTGTATCAAGAGCAAGGTTCGATTTTGGTTTTCGTA
GATAAACAGGAACATGCTGATCGCCTTCTAAAAGATCTGATGGGTAGTAGCTATCCTTGT
ATGGCTTTGCATGGAGGTATCGACCAGTATGATAGAGATTCTGTTATAAACGATTTCAAA
AATGGCATCACGGGGCTCCTTATCGCCACCTCAGTTGCTGCTAGAGGACTGGACGTAAAA
AATCTCATCCTAGTTATAAACTACGACTGTCCAAACCACTATGAAGACTATGTTCACAGG
TGCGGACGTACTGGGCGGGCCGGTTCCAAGGGTTTTGCTCATACCTTCATCGTTAAAGAA
CAAGCGAGACATGCGGGTGATATTATAAAAGCTTTGGAGATGAGTGGTGCCAGTGTTTCC
AAGGAGCTAGAGAGCTTATGGGCCACCTACAAGTCAGATCTTACAGCCCAAGGAAAGGCT
GTCTCCAAAAACAGCGGTTTCACCGGACGTGGATTTAAATTCGACGAAACCGAAGACGAA
CTCGTCAAAGAAAGGAAACAGTTCCAGAAAGCAGCTTTAGGGCTGCATGATTCAGATGAT
GAATCCCCTGCAAAAGATATCGATGAACAAATCGAGAATATGTTCAACAGCAAAAAGAGG
GTAAAAGATGTTGTTGGACCCTTGGTATTACCTGGGGCAGGGGGTGAAAGTGCCCAAGGA
CAGGGTGGACTTTCTGGCTCAAACATTGAGAAATTGGAAATTGCAAAGAGGTTGGCAGTT
CGTATCAATGTTAAGAAGAATTTGGGAGCTGAAGCTCAGGACGTCACCCAACAAGCAGCA
ACTGCTATCCTTAAAGGAGGACCGTTTCAAGCTCCGAAAGTGTCTGCAAAGACCATCGCT
GGGCAGTTGGCAGAAAAAATTAATCAGAAATTGAACTACGTTCCCCAGGAGAAAAGTGAA
AACGATGACGAAGAGAATCCTGACGGACAAGGCGCAACATTCAAACGTTACGAAGAGGAA
CTAGAAATTAATGATTTTCCACAGACATGTAGATGGAAAGTCACCTCGAAAGATACACTC
AGTCAAATTAGTGAATATAGTGAGGCTGGTATTACTATTCGTGGACAGTATTTTCCGTCT
GGAAAGCAACCTGAAGAGGATGAGAGAAAACTCTATCTCGCTATTGAAGCTGTTTCTGAA
ATGGCTGTACAGAAAGCTAAGAACGAAATCACCAGACTCATTAAGGAGGAATTAATAAGA
CTGCAAAACTCCTACCAGCCTATAAATAAAGGCCGTTACAAAGTCACGTAATTGCGAGAG
GGAAATACGTCGTGGGTGATGGCGCAGTTAAAATCTGCTCTAGAATTGTTGCTGGAATTT
AGTTCAGTACTTGATTGTCCAGCTGCATCAAAGGTTATCTGTTTTTTAGGGGAATTTGTT
AATAAATTTACCCAAAAAGTA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[388-612] 1.55E-72 - T[548-784] 1.39E-50 |
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[401-429] 10.753 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[420-625] 9.6E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[425-598] 4.4E-50 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[432-610] 31.955 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[556-564] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[621-782] 20.896 |
| CDD |
Helicase_C (IPR001650) - T[624-751] 6.53482E-30 |
| Pfam |
Helicase_C (IPR001650) - T[636-743] 2.6E-25 |
| SMART |
Helicase_C (IPR001650) - T[658-743] 6.3E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX46_HUMAN | 63.627 % | 1156 | 0 |
| DDX5_HUMAN | 43.192 % | 370 | 1.34E-115 |
| DDX42_HUMAN | 46.004 % | 402 | 6.94E-124 |