- Transcript 'KH2012:KH.L116.49.v2...' >
- Region 'REG00001121' >
- Clone 'cima8106412' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S10.g15789.02.t
Possible name(s)
DDX42; DDX46; DDX5
Gene model
Location
S10 [590,255 / 597,965]
Amino acid sequence
Length: 1,140
>Harore.CG.MTP2014.S10.g15789.02.p
MEVDTTISATVNIKQEPVEKDPKYQGTTEENKKSRSRSRSKQKSNIRNRNYRSHHEKKRS
RSRSPGSKKKYSRSYSRHSKSSSKRSRSKRSRSRSRSRDKSRRGRDKKSHPEGQKRKQRS
SSTGSSGGSEERTKNNTIKEANEDNKSKSKSTSETKEKSEKRSRRSRSRSRGRKRSHERR
SSRNERSRKKGRYGKHDKEESRDKDKDVVKDPEKKENNKAKDTLSKDFEQARLEEEMKKR
KDRVETWRKEQKLALGQPSQNDDDDAPGGKQWTLDDDDDDDEEEGEREEEKEETVKDENG
VEDGRENEKIDSLEKMEEAEEDEDDPLDAFMSNLKAENDKHMFGNTTENTSGPKISRVVA
VAKKKSAHIKPEKKKGELMEGDADAMEYSSEEEEESLDSALGKFRNKQQGQGRKLDTVID
HSKIQYEDFCKKFYVEVPELAAMTEEEVDDVRMNLEHIKVRGKNCPKPIRTWAQAGVSYK
VLNALKKLNFEKPTSIQAQALPVIMCGHDMMGIAKTGSGKTLAFVLPMLRHIMDQRPLED
KEGPIAVIMTPTRELALQITKECKKFTKPMKLKVVCVYGGTGISEQIAELKRGAEIIVCT
PGRMIDMLAANSGRVTNMRRCTYLVLDEADRMFDMGFEPQVMHIMNSVRPDRQTVMFSAT
FPRQMEALARRILSKPIEVQVGGRSVVCSDVTQHVHILEKDQKYFKLLELLGLYQEQGSI
LVFVDKQEHADRLLKDLMGSSYPCMALHGGIDQYDRDSVINDFKNGITGLLIATSVAARG
LDVKNLILVINYDCPNHYEDYVHRCGRTGRAGSKGFAHTFIVKEQARHAGDIIKALEMSG
ASVSKELESLWATYKSDLTAQGKAVSKNSGFTGRGFKFDETEDELVKERKQFQKAALGLH
DSDDESPAKDIDEQIENMFNSKKRVKDVVGPLVLPGAGGESAQGQGGLSGSNIEKLEIAK
RLAVRINVKKNLGAEAQDVTQQAATAILKGGPFQAPKVSAKTIAGQLAEKINQKLNYVPQ
EKSENDDEENPDGQGATFKRYEEELEINDFPQTCRWKVTSKDTLSQISEYSEAGITIRGQ
YFPSGKQPEEDERKLYLAIEAVSEMAVQKAKNEITRLIKEELIRLQNSYQPINKGRYKVT
Nucleotide sequence
Length: 4,137
>Harore.CG.MTP2014.S10.g15789.02.t
ATAACGATACCGCAAGGGGTCGATAGAGCGGTATCTTTAAGTTTTATTATTTTGTGACTT
AATCCGTAGCAAACGTGTTCTGTTTTAGACTCCTGAAAAAAGGTTCGAATTCCCTACTTT
GACATAGAGAAATATACTTCCGAATTACATTCATGGAGGTGGACACAACTATCAGTGCAA
CTGTGAATATAAAACAGGAGCCTGTTGAAAAAGATCCTAAATATCAAGGGACAACAGAAG
AGAACAAGAAATCAAGATCTCGCTCCAGATCAAAACAGAAATCCAACATAAGGAATAGAA
ATTATCGCTCTCACCATGAGAAGAAGCGTTCAAGATCAAGATCTCCGGGCTCGAAAAAAA
AATACTCCCGATCTTATTCTCGCCATTCGAAAAGCTCTTCTAAAAGATCAAGATCTAAAC
GCTCGCGTTCAAGGTCCAGGTCACGAGATAAAAGTCGCAGAGGCCGCGATAAAAAATCTC
ACCCGGAAGGTCAAAAACGAAAACAGAGAAGCTCAAGTACAGGTAGTTCTGGTGGCTCAG
AAGAGAGGACGAAGAATAATACTATTAAAGAAGCAAATGAAGATAATAAAAGTAAATCCA
AGTCTACATCTGAAACTAAAGAAAAATCTGAAAAGAGAAGCAGAAGATCAAGGTCTAGAT
CAAGAGGAAGAAAAAGGTCTCATGAACGACGTAGTTCAAGAAATGAAAGGTCAAGGAAAA
AGGGTAGATATGGAAAACACGACAAGGAAGAATCCCGTGACAAAGATAAGGATGTGGTTA
AAGATCCTGAGAAAAAGGAGAATAACAAGGCGAAAGACACATTATCGAAGGATTTTGAAC
AAGCCAGGTTAGAAGAGGAGATGAAAAAGCGAAAGGACAGAGTAGAAACCTGGAGAAAAG
AGCAGAAGCTCGCTCTCGGGCAGCCGTCTCAAAACGATGACGATGATGCACCAGGAGGGA
AACAATGGACCTTGGATGATGATGACGATGATGATGAGGAGGAGGGGGAGAGAGAGGAGG
AGAAAGAAGAAACCGTGAAGGATGAGAATGGTGTAGAAGATGGAAGGGAAAATGAAAAGA
TAGATTCTCTGGAAAAGATGGAAGAGGCTGAAGAAGATGAGGATGATCCTCTGGATGCAT
TCATGAGTAATTTGAAGGCTGAGAATGACAAACACATGTTTGGGAATACAACAGAAAATA
CAAGTGGTCCTAAAATCAGCAGGGTGGTGGCAGTAGCAAAGAAAAAATCAGCGCATATCA
AACCAGAAAAGAAGAAGGGAGAATTAATGGAGGGTGACGCTGATGCTATGGAATACTCAT
CAGAGGAAGAGGAAGAATCACTCGACAGTGCCTTGGGTAAATTCCGAAACAAGCAGCAAG
GTCAAGGTCGTAAGCTCGATACTGTCATCGATCACTCAAAAATCCAATATGAAGATTTTT
GCAAGAAGTTTTATGTTGAGGTCCCTGAGCTTGCCGCCATGACGGAAGAAGAAGTTGATG
ACGTGAGAATGAATTTGGAACACATCAAAGTTCGTGGAAAGAACTGCCCCAAGCCGATTA
GAACTTGGGCACAGGCTGGAGTCTCGTATAAAGTACTGAATGCTCTGAAAAAATTGAATT
TTGAAAAACCCACCTCAATACAGGCGCAAGCTCTTCCCGTTATAATGTGCGGCCATGACA
TGATGGGCATAGCAAAAACTGGGAGCGGCAAAACGTTGGCCTTTGTTTTGCCAATGCTGC
GACATATAATGGACCAGAGACCTCTGGAAGATAAAGAGGGTCCGATTGCTGTCATCATGA
CACCCACAAGAGAACTAGCGCTCCAGATCACGAAAGAATGCAAAAAGTTTACCAAACCTA
TGAAACTAAAAGTTGTTTGTGTGTATGGCGGGACAGGGATTTCCGAGCAAATCGCGGAGC
TGAAACGTGGTGCCGAAATAATAGTTTGCACTCCGGGAAGAATGATTGACATGCTTGCAG
CGAACAGCGGCAGAGTTACAAACATGAGAAGGTGTACTTATCTGGTTTTGGATGAAGCTG
ATCGTATGTTTGATATGGGTTTTGAGCCACAAGTAATGCACATAATGAATTCCGTCAGAC
CCGACCGACAGACAGTGATGTTTTCTGCCACATTTCCCCGTCAAATGGAAGCACTGGCAA
GAAGGATACTTAGCAAGCCGATCGAGGTCCAAGTAGGCGGTCGGAGTGTGGTTTGTTCTG
ATGTCACCCAACATGTTCACATACTTGAGAAAGACCAAAAATACTTCAAACTATTAGAGT
TGCTCGGACTGTATCAAGAGCAAGGTTCGATTTTGGTTTTCGTAGATAAACAGGAACATG
CTGATCGCCTTCTAAAAGATCTGATGGGTAGTAGCTATCCTTGTATGGCTTTGCATGGAG
GTATCGACCAGTATGATAGAGATTCTGTTATAAACGATTTCAAAAATGGCATCACGGGGC
TCCTTATCGCCACCTCAGTTGCTGCTAGAGGACTGGACGTAAAAAATCTCATCCTAGTTA
TAAACTACGACTGTCCAAACCACTATGAAGACTATGTTCACAGGTGCGGACGTACTGGGC
GGGCCGGTTCCAAGGGTTTTGCTCATACCTTCATCGTTAAAGAACAAGCGAGACATGCGG
GTGATATTATAAAAGCTTTGGAGATGAGTGGTGCCAGTGTTTCCAAGGAGCTAGAGAGCT
TATGGGCCACCTACAAGTCAGATCTTACAGCCCAAGGAAAGGCTGTCTCCAAAAACAGCG
GTTTCACCGGACGTGGATTTAAATTCGACGAAACCGAAGACGAACTCGTCAAAGAAAGGA
AACAGTTCCAGAAAGCAGCTTTAGGGCTGCATGATTCAGATGATGAATCCCCTGCAAAAG
ATATCGATGAACAAATCGAGAATATGTTCAACAGCAAAAAGAGGGTAAAAGATGTTGTTG
GACCCTTGGTATTACCTGGGGCAGGGGGTGAAAGTGCCCAAGGACAGGGTGGACTTTCTG
GCTCAAACATTGAGAAATTGGAAATTGCAAAGAGGTTGGCAGTTCGTATCAATGTTAAGA
AGAATTTGGGAGCTGAAGCTCAGGACGTCACCCAACAAGCAGCAACTGCTATCCTTAAAG
GAGGACCGTTTCAAGCTCCGAAAGTGTCTGCAAAGACCATCGCTGGGCAGTTGGCAGAAA
AAATTAATCAGAAATTGAACTACGTTCCCCAGGAGAAAAGTGAAAACGATGACGAAGAGA
ATCCTGACGGACAAGGCGCAACATTCAAACGTTACGAAGAGGAACTAGAAATTAATGATT
TTCCACAGACATGTAGATGGAAAGTCACCTCGAAAGATACACTCAGTCAAATTAGTGAAT
ATAGTGAGGCTGGTATTACTATTCGTGGACAGTATTTTCCGTCTGGAAAGCAACCTGAAG
AGGATGAGAGAAAACTCTATCTCGCTATTGAAGCTGTTTCTGAAATGGCTGTACAGAAAG
CTAAGAACGAAATCACCAGACTCATTAAGGAGGAATTAATAAGACTGCAAAACTCCTACC
AGCCTATAAATAAAGGCCGTTACAAAGTCACGTAATTGCGAGAGGGAAATACGTCGTGGG
TGATGGCGCAGTTAAAATCTGCTCTAGAATTGTTGCTGGAATTTAGTTCAGTACTTGATT
GTCCAGCTGCATCAAAGGTTATCTGTTTTTTAGGGGAATTTGTTAATAAATTTACCCAAA
AAGTACAGTAGTTGGAATAACTATATAATAAATCAATCATAGACGAAGATTGTGACCGTA
CGGTACATAAAATATTAGACAAAGTGAATTAGAAAAACAAGGTTGAGTGCGTAATTGGTT
TTAGAAGTGCGTTATGCTACCTACCGATCATTAGTGCCATCTGCTACGTAACCGCAAAAT
AAGCAGTAAAACATGGTAGTATGAGCGATCTCTTTATCTTGCCTACACTTCAATAAACCA
CTATTACATTGATTTCTTTGAGGAAATAGTAGAGTACAAAATGATTAGTTTTCTTTACTA
ACGATATTATTGAATTATTCCCCTCGTCCTTTCTCGTCAGTCATCATCCTTTCGCAACCA
ACTGTTGAAATAATATCTATCCACCTCTTGAATGAATGCGGTTTGGAAGTGTTGTCG
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[457-681] 1.81E-72 - T[617-853] 1.52E-50 |
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[470-498] 10.753 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[489-694] 9.6E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[494-667] 4.8E-50 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[501-679] 31.955 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[625-633] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[690-851] 20.896 |
| CDD |
Helicase_C (IPR001650) - T[693-820] 4.87988E-30 |
| Pfam |
Helicase_C (IPR001650) - T[705-812] 2.9E-25 |
| SMART |
Helicase_C (IPR001650) - T[727-812] 6.3E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX46_HUMAN | 63.405 % | 1161 | 0 |
| DDX5_HUMAN | 43.192 % | 370 | 5.45E-115 |
| DDX42_HUMAN | 46.004 % | 404 | 3.6E-124 |