- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S111.g14994.01.t
Possible name(s)
PCDH18; PCDH19; PCDHGB3
Gene model
Location
S111 [231,173 / 240,306]
Amino acid sequence
Length: 1,251
>Harore.CG.MTP2014.S111.g14994.01.p
MPGGLRATDAVYYFTGTSLENIGKLVPVGNSIFRQFRIYIGMDTYTAVILIFYVFIVITC
QPPSCTSATVKSSIHVEEGMPEGTFIVNLARLFNAKNSGFLHQNYEYKILSQNLKAPASM
RKRTSALRWVKLNSRNGVMTTTRKIDRDTECPGADKCIVHIQAMRLPQRAFTLLDLELII
DDVNDNSPMFDQGVIQISISESSSAGDVYSLDAYQARDKDTGNNSRIYYELSPNRFFGLK
QYIGTGGMPHLQLYLVQDLDYERYPEIKLTLSAIDGGRPALQTKIPIKIQVIDVNDNVPV
FQKKEYFITLRENLSPGNVVETVKAYDKDSDSYGQIRYTIPRRNSATARSLLLVDENTGV
LTLNERVDGEKHDGLRILIEAEDNDPINPRTGECWVVISVEDVNDNEPVITAIPILFSQD
QSIYVSELAPVGTYVMRVSATDEDKGRNGEVHLEIETNAMGSCRRRVSRKGLSTSKLFVL
SADGLVATGELLDRESCSEYIVTLKACDFGSPNRCSTKTIAVVVLDENEYAPKFQAPTQR
VVMSEDMPSGTIITTVRAYDGDNVNGRGFVQSKNGGVIEGENGKVSYYITSGGRGFFTID
SETGTVRLLRPLDREEKKEWTLTITARDGAKPRSLESVCKVIITVDDINDNIPQFTNPAI
NNSLVYASISRDDIVVKLNAKDADSGRNSHLRYKIISDNTNGLVSKSMMKNVNGTNNFVL
NSLTGELRLNFSCKNMSDLIGIHDITIRVNDMGETPLSSNISLRIKVSKSMLDNWKSHIN
RDGETFTVNFLVLAVSLGSATVILMVVIIAVAIRCQRENEDMEMYNTPKHDEYDIEKKAN
KDDDISMIPDHNFTPAISVKSEILSSNGSHATMKVASASASNFTGKLEESIDVTHRNDPN
HLSVSQNFESGANFHSDEDSGRGDSDVDVTSNNQTKDRAKLQNRNVPVFGMGPFCNHQCK
QLGHSDNCWMPRPGENTNVVPKTKTSANAAENTLPITNRTNHLRRYSSNESCLNDRPCLS
KPRSRQPLQITNNGPREMYSSNRYLPPHEIKYASCKLPSLTQVRYERSLSCRSTPTNFEP
SGSYSSATCSRYYAMNSSRNDMCLNRGSATNLTVVHEKRPFSLRNDNLLLENPSRSYLKN
NGEGSSCKNVRFAPPDIPSIEDHNAEKSSKDDTVNNEAPQKVILRFPSVSSPTETSSNTQ
PSAGCRYSMQDTCEIINDIDRLFLNLNNNEDIRKEMKKKTWRNVNNKQQWR
Nucleotide sequence
Length: 3,756
>Harore.CG.MTP2014.S111.g14994.01.t
ATGCCAGGTGGCCTACGAGCAACAGACGCTGTTTACTATTTTACCGGAACCTCGTTGGAA
AACATCGGGAAGTTAGTACCAGTGGGCAATAGTATTTTTCGACAGTTTCGCATTTATATA
GGCATGGATACTTATACTGCAGTAATTTTAATCTTCTATGTATTTATCGTCATAACATGT
CAGCCACCCAGTTGCACATCAGCTACGGTTAAATCAAGCATTCACGTGGAAGAAGGAATG
CCAGAAGGTACGTTCATCGTGAACCTTGCCAGATTATTCAATGCCAAAAATTCTGGATTC
CTCCATCAAAATTACGAGTACAAGATACTGAGCCAAAATTTGAAAGCTCCAGCGTCGATG
AGAAAGCGAACCTCGGCGCTTCGTTGGGTCAAATTAAATTCCCGTAACGGTGTGATGACC
ACGACACGAAAGATAGATCGGGATACGGAGTGTCCAGGTGCAGATAAATGCATCGTCCAT
ATACAGGCGATGAGGCTGCCGCAAAGAGCATTTACGCTTCTCGATTTGGAATTAATTATT
GATGACGTCAACGATAACTCACCCATGTTCGACCAAGGGGTGATTCAAATTAGCATAAGT
GAAAGTTCGAGCGCCGGAGACGTCTATAGTTTGGATGCATATCAAGCGAGGGACAAAGAT
ACTGGAAACAACTCTCGCATCTATTACGAATTATCCCCAAATCGTTTCTTCGGTTTGAAA
CAATATATTGGGACAGGAGGAATGCCACACTTGCAACTTTACTTAGTGCAGGATCTCGAT
TATGAACGATACCCTGAAATAAAATTAACTCTGTCGGCAATTGATGGCGGACGACCTGCA
CTGCAAACCAAAATTCCTATCAAAATTCAAGTGATTGATGTAAACGATAATGTTCCAGTA
TTTCAAAAAAAGGAATACTTTATTACTTTGCGGGAAAACTTGTCGCCTGGAAACGTGGTG
GAAACGGTGAAGGCTTACGACAAAGATAGCGACAGTTACGGACAAATAAGATATACAATT
CCCCGACGGAATAGCGCTACGGCCAGGAGCCTGCTATTGGTAGACGAGAATACGGGGGTG
CTTACACTTAACGAGAGGGTCGATGGAGAAAAGCATGATGGATTAAGAATCTTGATCGAA
GCTGAAGACAACGATCCCATTAACCCAAGAACCGGAGAATGCTGGGTTGTTATCAGCGTG
GAAGACGTTAATGACAACGAACCTGTTATAACGGCGATTCCCATTCTGTTCTCGCAGGAT
CAAAGTATTTACGTATCGGAACTCGCTCCAGTGGGAACTTATGTGATGAGAGTGTCTGCT
ACAGACGAGGATAAGGGAAGGAACGGCGAAGTTCATTTGGAAATCGAAACAAACGCTATG
GGAAGTTGCCGGAGGCGTGTATCACGTAAAGGCTTATCAACATCTAAACTGTTCGTGTTA
TCTGCTGATGGACTCGTAGCAACTGGCGAGTTGTTGGATCGAGAATCATGTAGCGAATAC
ATCGTTACACTAAAGGCATGCGACTTTGGCAGTCCCAATCGATGTTCAACGAAAACAATC
GCGGTCGTAGTTTTAGACGAAAATGAATATGCACCAAAGTTTCAAGCACCCACACAGCGC
GTAGTCATGAGCGAGGATATGCCATCGGGCACGATTATTACAACAGTTAGAGCTTATGAT
GGTGACAATGTTAATGGCAGAGGATTTGTCCAAAGCAAGAACGGAGGTGTCATAGAGGGA
GAAAATGGTAAAGTTAGTTATTACATAACTAGCGGAGGACGCGGATTCTTTACGATTGAT
TCAGAAACAGGAACGGTACGACTACTTCGACCATTGGATAGGGAGGAAAAGAAGGAATGG
ACGCTGACTATAACCGCCCGCGATGGAGCAAAACCGAGATCTTTAGAAAGCGTCTGCAAG
GTCATTATAACCGTCGATGATATCAACGATAACATCCCACAGTTCACTAATCCAGCCATC
AATAATTCACTTGTTTATGCCAGCATTTCAAGAGATGATATAGTTGTCAAATTAAATGCA
AAGGACGCTGATTCTGGGAGAAATTCACATCTGCGCTACAAGATAATCTCGGATAATACG
AATGGTTTGGTTTCCAAATCAATGATGAAAAATGTCAATGGGACCAACAATTTCGTACTG
AATTCACTCACTGGAGAACTTCGACTGAATTTCAGTTGCAAAAACATGTCAGATCTCATC
GGAATCCATGATATTACGATACGAGTTAATGACATGGGCGAAACTCCATTAAGCAGCAAC
ATATCTTTGCGAATCAAAGTGTCAAAATCAATGTTAGACAACTGGAAATCTCACATCAAC
CGAGATGGCGAAACTTTCACAGTTAACTTTTTAGTATTGGCAGTGTCCCTCGGCTCCGCT
ACTGTCATACTGATGGTGGTGATTATCGCAGTGGCTATCAGATGTCAGCGGGAAAATGAG
GACATGGAAATGTACAATACACCCAAACATGATGAGTACGATATAGAAAAGAAGGCAAAC
AAAGACGATGACATTTCTATGATTCCAGACCATAACTTCACACCGGCAATATCAGTTAAA
AGTGAAATCCTGTCCAGTAACGGATCTCATGCAACAATGAAAGTAGCCTCGGCCTCTGCA
TCAAATTTCACGGGTAAACTAGAAGAGAGTATCGATGTTACACATAGGAATGACCCAAAC
CATCTCTCAGTATCACAGAATTTTGAAAGTGGCGCAAACTTTCATTCGGACGAGGACAGC
GGGAGAGGAGACAGTGATGTAGACGTAACCAGTAATAATCAAACGAAAGATAGAGCAAAA
TTACAAAATCGAAATGTTCCCGTCTTCGGCATGGGACCTTTTTGCAACCACCAATGCAAA
CAGCTTGGTCATAGTGACAATTGTTGGATGCCACGGCCAGGCGAGAATACAAACGTTGTC
CCAAAAACTAAGACCAGTGCTAACGCCGCAGAAAATACTCTTCCAATAACGAATCGCACG
AACCATTTACGCCGATACAGTTCTAACGAATCTTGCCTGAATGATCGACCTTGCCTATCG
AAACCACGCAGTCGTCAGCCGCTACAGATTACTAACAACGGCCCACGAGAAATGTACAGT
TCGAATCGTTACTTGCCTCCCCACGAGATAAAATATGCATCATGCAAACTGCCATCTCTT
ACCCAAGTTAGATATGAAAGGAGCCTATCATGTCGCAGCACTCCAACTAACTTCGAACCA
TCGGGTTCATATTCATCAGCGACATGTTCCAGATATTACGCAATGAATTCGTCGCGAAAC
GACATGTGTCTCAATCGCGGTTCTGCAACGAATCTTACCGTTGTTCACGAAAAACGACCA
TTCTCTTTACGGAATGACAATTTATTACTCGAAAATCCTTCACGGAGTTACTTGAAAAAT
AACGGCGAAGGTAGCTCTTGCAAAAACGTTAGGTTCGCCCCACCTGACATCCCTTCAATC
GAAGACCACAACGCAGAGAAGTCATCAAAAGACGATACTGTTAATAATGAAGCTCCACAA
AAAGTTATCCTAAGATTTCCAAGCGTATCTTCACCAACGGAAACAAGTTCAAATACTCAG
CCTTCTGCTGGTTGTAGATATAGCATGCAAGATACTTGCGAAATTATTAATGATATTGAT
CGATTATTTTTAAATTTAAATAACAATGAAGATATTAGAAAGGAAATGAAAAAGAAAACG
TGGAGGAATGTAAATAATAAGCAGCAGTGGCGATAA
| SMART |
Cadherin (IPR002126) - T[93-188] 0.31 - T[214-299] 7.5E-17 - T[323-408] 1.6E-16 - T[438-532] 4.1E-14 - T[571-653] 1.0E-24 - T[678-771] 0.031 |
| PRINTS |
Cadherin (IPR002126) - T[128-147] 3.9E-27 - T[301-330] 3.9E-27 - T[499-511] 3.9E-27 - T[513-532] 3.9E-27 - T[532-545] 3.9E-27 - T[602-628] 3.9E-27 - T[637-654] 3.9E-27 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[184-301] 7.71E-18 - T[289-412] 1.57E-23 - T[403-526] 3.0E-16 - T[522-659] 1.43E-24 - T[648-767] 7.0E-13 |
| Pfam |
Cadherin (IPR002126) - T[197-291] 5.1E-9 - T[306-401] 6.4E-11 - T[422-525] 3.7E-10 - T[543-645] 3.2E-15 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[289-299] . - T[398-408] . - T[643-653] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 27.041 % | 305 | 1.6E-86 |
| PCD19_HUMAN | 29.419 % | 285 | 1.17E-79 |
| PCDGF_HUMAN | 30.453 % | 270 | 2.0E-75 |