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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S4...' > 
  2. Clone 'cima819919' > 
  3. Transcript 'KH2012:KH.C5.166.v2....' > 
  4. Transcript 'Boleac.CG.SB_v3.S124...' > 
  5. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S117.g03848.01.t

Possible name(s)

RREB1; ZNF200; ZNF850

Gene model

Harore.CG.MTP2014.S117.g03848

Location

S117 [75,336 / 87,467]

Sequences

Amino acid sequence

Length: 1,546

>Harore.CG.MTP2014.S117.g03848.01.p
MRNKLLASFLIYAIVITNLRGVPMMSRRKQTKPFKVQDELVEEADRKKRSRRFHTESSSM
EVSSSQSDVNSENLSDEEVEDNTMMPDSVARRSKRHVSKCNQCGKVLASALSLARHRLTH
SQNKPHQCPKCNAGFKTSSNMHRHLRIHFREETEPEPKHFVVSKTPTVRSPRQNIRTPNK
FKEFDVDLVGIRSSAVKRTPEEQTKKKVKTPIVVVKAENLDPVTKEVSKNEDDLCKKRSG
SNFTLEETLTTSKTIRRDSKGDDPDLMCHICNKTFISKFGLLTHSISHPDISTRCLLCDQ
SFITHKGLVMHNIIVHKIMEAKHDVKKNSANVNVVNKGFQDLVLVDFSSTKFPQIAEAVC
TRVQHKHPERDSQHIFICKKCNKAFPQLCSLELHVKKIHEVSTEIKPEKDATLDFFSFLN
LTAVKDDPTTDPKSVETLVDNPIHLIRNGLDDDLVYASDSVASNNVPDWMNNQPDIDGTG
YKSENETASKRPRLMLKIVRKKSLAHPPLLKFKPLITGNQIQAGKYFIDENGLHEKRTDI
IATRKLRNFAVKLSDSSPQIIKHNKPETASKTNESSTERNVFWCRICNYSSHEKSALVRH
LLTHSGIRPYFCKMCNYAFTTKANCERHVRKRHHCQTKDEIESAVRCDMEMLRKAPKDDI
YMISGSNSSCPVCGKSFNYNQELKEHLKIHEERQFVCQLCNVRCTTRNNCVRHILYKHPG
IPHQEANNIISFVGTQRRGNNLRKIAPKTSATIDISRGSIVPRDPVSSSLCKNKRFSGSS
ISESQINNTLHSRNFKITSETEINNDSDILDAAGAESTMLAHGYVDVEDDNGGVAAGREK
PKCSPKKMIGLLPLMKIKAYNEANTKFYLKMVELYEKVNFFNRALRNDITEGDEPNNELN
TENDKAVFECHLCSSVFESKEDLTHHAENCSGEDVAFNNSFLFNNNTEDISFQKDGWNED
RASFQNQTSNSNYVMNEGMDWASGQKNDGDSNPEVNIKSTQMSSVVDTTERKKSQANDHA
ILSLSNEANSSRKEFTNRFQNLDDWEENVVPYSPSSNKSSDTPPQSDSSFPFISDVSSSM
YTFSNKESSYVEDSLLMNLCDDAVGSNYKKMKARKTENSNEIGSIQDGFLSVQGFSSSFP
TMVNMDSPTMSRIRSQAPHSNSEREGDNNHEKVLVPSKGRFYTARKCPQCDKSFPWASSL
RRHIMTHTGLKLYMCRLCKMRFTTRSNLIRHVYRRHGMAKQHPDFASCLAKLHPSDTLLK
EVEANVRRKIDMQRKKGGVLVNENDDEPELGNETDEEDYMVESQNLTKKTGRNDFQSMLE
QDPETLLMDLDYSPRDDVTLSSAMENVKNTSNPQIPSDNRAQQDLNANDSEEQEDSLVIV
ESEENSSTAAVLDEEETSLDGSNLEDDGVPLLNRSYHDRESRSSGKQEQSSPRSLAKKKK
PLYKTVLKPKIRNKQSTQFVCGLCKKIFKSVPELREHLDTHDVPHSWHCPICSVPFTNKY
NCQRHLTRRHQCTDIEPMYVEDSKHGPRTARGHPRKMPVSPMDGKI

Nucleotide sequence

Length: 5,363

>Harore.CG.MTP2014.S117.g03848.01.t
CCTAGAGACAAAAGAGAGAAAGGAGAGACGAGAGAACGCAAAGTTAATATTATACAGCTC
TGTAACCACGAAAAGAAGTCAAAAATAATAAAGGGAGGCCGACTTGGATGATGTATTGTA
TACAAAGGCACTCTTGGTAGAATTACGCCGTTGGGTGAGATCAACTGCTTTGTGATGTTC
CTCTCTCTCTCCTCTCTTCTCTCGATTCGACGACTGCTGTAAAAGCACTGGACAACTAGA
GCTAGCTAGCTGCTTGTTGTACGAAACGAAAGAAGAGGACACGTACGAAGGCGTTTCAAT
CATTCAATGAGCTCGAGACAAATCGATGAGAGCTACACTGCGTCGCAGCTAGAATGAGGA
ACAAATTACTTGCCTCCTTTTTGATTTACGCAATTGTCATTACTAATTTACGTGGCGTGC
CAATGATGTCAAGAAGAAAACAGACTAAGCCGTTTAAAGTACAAGATGAACTTGTGGAGG
AAGCTGATCGGAAAAAACGGTCGAGAAGATTTCATACAGAATCTTCATCCATGGAAGTGT
CATCCTCGCAGAGTGATGTCAATAGTGAAAACCTCAGTGACGAAGAGGTTGAAGATAACA
CTATGATGCCTGATTCAGTTGCGAGGAGATCTAAGCGGCATGTTTCAAAATGTAACCAGT
GTGGCAAAGTCCTCGCATCTGCTTTGTCTCTTGCTCGACACAGGTTAACACATTCTCAAA
ACAAACCACATCAATGTCCCAAGTGCAATGCAGGATTTAAAACGTCATCAAACATGCATC
GTCATTTACGCATCCATTTTCGTGAAGAGACAGAGCCGGAACCAAAACATTTTGTGGTCT
CAAAGACACCAACAGTTCGTTCGCCGAGGCAAAACATACGGACTCCAAACAAATTTAAAG
AGTTCGATGTGGATCTTGTTGGCATACGTTCCTCCGCTGTTAAGAGAACGCCTGAAGAGC
AAACAAAAAAGAAAGTGAAAACTCCGATAGTCGTGGTGAAAGCAGAAAACTTGGATCCGG
TTACAAAGGAAGTCTCAAAGAATGAAGATGACTTGTGTAAAAAGAGGAGCGGTTCAAACT
TCACGCTTGAGGAAACATTGACAACTTCTAAGACGATTCGTCGAGACTCCAAAGGAGATG
ATCCAGATCTGATGTGTCATATCTGCAATAAGACATTCATATCTAAGTTTGGTCTGCTTA
CTCATTCTATCTCCCATCCAGATATATCAACCAGGTGTCTTCTTTGCGATCAATCATTCA
TCACTCATAAAGGTCTTGTAATGCACAACATCATAGTACATAAGATTATGGAAGCCAAAC
ATGATGTTAAGAAAAATTCCGCCAACGTCAATGTTGTCAATAAAGGCTTTCAAGATCTGG
TACTTGTAGATTTTTCGTCTACAAAATTTCCACAGATTGCTGAGGCAGTTTGTACTCGAG
TGCAACACAAACATCCTGAACGAGATTCTCAGCATATCTTCATATGTAAAAAGTGTAACA
AAGCTTTTCCTCAGCTGTGTTCCCTCGAACTCCATGTGAAAAAAATTCATGAAGTCTCAA
CTGAAATAAAACCGGAAAAAGATGCCACGCTAGACTTCTTTTCATTCCTTAATCTGACCG
CAGTTAAGGACGATCCGACTACAGATCCCAAATCTGTAGAGACATTGGTGGACAATCCGA
TACACTTGATAAGAAATGGTCTAGATGATGATTTAGTATATGCTTCAGACTCTGTGGCAT
CAAACAACGTCCCGGACTGGATGAACAACCAACCTGATATAGATGGCACTGGATACAAAA
GTGAAAATGAAACTGCCTCAAAACGACCAAGACTCATGCTAAAAATCGTTAGAAAGAAGT
CTTTAGCTCACCCTCCGCTGCTCAAATTCAAACCGCTCATAACAGGGAACCAGATACAGG
CTGGCAAGTACTTCATTGATGAAAATGGCTTGCATGAAAAGAGAACTGATATTATTGCCA
CAAGAAAACTGAGAAATTTTGCAGTGAAACTTAGCGATTCTTCCCCGCAGATCATAAAGC
ATAACAAACCAGAAACAGCCAGCAAAACGAATGAATCATCTACAGAGAGAAATGTCTTCT
GGTGTCGAATATGCAACTATTCATCTCATGAGAAGAGTGCTTTAGTTAGACATTTGCTCA
CACACAGTGGAATTCGTCCCTATTTTTGTAAGATGTGCAATTACGCATTCACAACAAAGG
CCAACTGCGAAAGACATGTCAGAAAACGTCACCATTGCCAGACAAAGGATGAAATTGAAT
CTGCAGTACGGTGTGACATGGAAATGTTGAGAAAAGCACCAAAGGATGACATATATATGA
TAAGTGGAAGTAACTCTTCTTGTCCTGTTTGTGGAAAGTCTTTCAATTACAATCAAGAAC
TAAAGGAACATCTGAAAATCCATGAAGAAAGACAGTTCGTTTGCCAGCTCTGCAATGTTA
GGTGCACGACTCGTAACAACTGCGTCCGTCACATACTGTACAAGCATCCCGGAATTCCTC
ATCAGGAAGCAAATAACATCATATCGTTTGTCGGAACACAAAGAAGAGGCAACAACTTGA
GAAAAATAGCACCGAAGACATCAGCAACCATAGATATCAGCAGAGGTTCTATAGTGCCAA
GAGATCCTGTTTCTTCAAGTCTATGCAAGAATAAACGCTTCAGTGGATCGAGTATTTCGG
AAAGCCAAATCAATAATACTTTACACTCAAGAAATTTCAAGATCACCAGTGAGACAGAAA
TCAACAATGATTCAGATATATTGGATGCTGCGGGTGCCGAATCAACCATGCTTGCCCACG
GCTACGTTGATGTTGAAGACGACAATGGCGGTGTTGCTGCAGGAAGGGAAAAACCTAAAT
GTTCTCCTAAGAAAATGATAGGACTTTTGCCATTGATGAAAATCAAGGCATATAATGAAG
CTAACACAAAGTTCTATTTGAAAATGGTAGAACTGTATGAAAAAGTGAATTTTTTCAACC
GTGCCCTAAGGAATGACATCACAGAAGGAGATGAACCGAACAACGAACTAAATACAGAGA
ATGACAAAGCAGTTTTTGAATGTCATTTGTGTTCCTCTGTGTTTGAGAGCAAAGAAGATT
TGACCCACCATGCAGAAAACTGCTCCGGTGAAGATGTTGCTTTCAACAATTCGTTTTTGT
TCAACAATAACACAGAGGATATCTCTTTTCAAAAAGATGGCTGGAATGAGGATCGTGCTT
CTTTCCAAAATCAAACTTCCAACAGCAACTATGTCATGAATGAGGGTATGGATTGGGCAA
GCGGGCAAAAGAACGATGGAGACTCTAATCCCGAAGTAAATATAAAATCAACACAAATGA
GCAGTGTAGTAGACACAACTGAAAGAAAAAAGTCACAAGCGAATGATCACGCCATTCTTA
GTTTATCCAATGAAGCTAATAGTTCTCGGAAGGAATTCACTAACCGATTCCAAAACCTTG
ATGATTGGGAGGAGAATGTTGTCCCATACTCTCCAAGTTCTAACAAATCTTCCGACACAC
CTCCGCAATCAGATTCTTCATTTCCTTTTATTTCCGACGTCTCTTCTTCCATGTATACAT
TTTCCAACAAAGAATCATCATATGTCGAAGATAGTCTGCTCATGAACTTGTGCGATGATG
CTGTAGGCTCGAATTACAAGAAGATGAAGGCGAGGAAAACAGAAAACAGTAACGAAATTG
GCTCGATTCAAGATGGTTTTTTATCAGTGCAAGGATTTTCATCCAGTTTTCCAACAATGG
TTAATATGGACAGTCCCACTATGTCACGTATAAGGTCTCAAGCACCTCACTCAAATTCAG
AAAGAGAAGGAGATAACAATCATGAAAAAGTCCTTGTGCCAAGCAAAGGAAGATTTTACA
CTGCTCGAAAATGCCCGCAATGCGACAAAAGTTTTCCTTGGGCCTCTTCTTTGCGTCGCC
ATATCATGACCCACACTGGACTCAAGCTTTACATGTGTCGTCTTTGCAAGATGAGGTTCA
CTACGCGTTCCAACCTGATCCGCCACGTATACCGTAGACACGGAATGGCAAAACAGCATC
CCGACTTTGCCTCCTGCTTGGCCAAACTCCATCCTTCAGACACCTTGCTGAAAGAAGTTG
AAGCGAACGTTCGTCGAAAGATTGACATGCAAAGGAAGAAGGGAGGCGTCCTGGTGAATG
AAAACGATGATGAGCCTGAGCTAGGAAATGAAACAGATGAAGAAGATTACATGGTGGAAA
GTCAGAATTTGACTAAGAAAACGGGCAGGAATGACTTTCAGTCGATGCTTGAACAAGATC
CAGAGACATTGTTGATGGATTTGGACTACAGCCCGAGAGACGATGTGACATTGTCAAGTG
CGATGGAGAATGTCAAAAATACATCAAATCCTCAAATTCCATCTGACAATCGGGCCCAGC
AAGATTTGAATGCTAATGACTCGGAGGAACAAGAGGATTCTCTGGTAATTGTGGAATCGG
AAGAGAATTCTTCCACTGCGGCAGTTCTAGATGAAGAAGAGACTTCGTTAGATGGCAGTA
ATTTAGAGGATGATGGGGTTCCATTGCTTAACAGAAGCTACCATGACAGAGAATCAAGGT
CTTCAGGAAAACAGGAACAAAGTTCACCCAGATCACTTGCAAAAAAGAAGAAACCTCTTT
ATAAAACAGTTCTGAAGCCTAAAATTCGAAACAAACAGTCAACTCAGTTTGTCTGCGGAC
TTTGCAAAAAGATTTTCAAGAGCGTGCCTGAACTAAGGGAACATTTGGACACGCATGATG
TACCACACTCTTGGCATTGTCCTATATGCAGTGTACCTTTCACTAACAAGTACAATTGCC
AGCGGCACTTGACTCGTCGTCATCAGTGCACTGACATAGAGCCGATGTATGTTGAAGATT
CAAAACATGGACCCAGGACAGCCAGGGGTCATCCTCGAAAAATGCCAGTTTCGCCAATGG
ATGGTAAAATATGATTTTATAAGTTGATCGTTTCTTTTTCATCAGCATTTATATTTACCA
TTTTAATTGGAGTTGGTAGTCACTGAAGTAAATTTATATAACAGCGGAATTAGTGAAGTT
GAATACCTAGTAGCATTGAGGTATAACGAAGGTTTTCTAAAATTTTCAAGGACATATTTC
CTGCACATATTTGTATACAGTGGACTATTATTCCAACCTCTATTTTTTCTTGACTTTTTA
TGCATTCTGAGTAGATATGTGTAAAATATGAAGTGATTTTAATGTAGATTTGTGTTTTAG
TGCTGACTTTTTTCAGAATAAATGATTGTCATTAGTATGTTTGGTGATGGAAAAAACGGT
TGCCTTAAGTTTGAGGAACTGGT

InterProScan

ProSiteProfiles
Znf_C2H2_type (IPR013087) - T[98-125] 12.05 - T[126-153] 11.759 - T[376-404] 10.512 - T[582-609] 11.094 - T[610-639] 9.993 - T[668-695] 11.552 - T[908-935] 8.891 - T[1185-1212] 12.508 - T[1213-1241] 10.408 - T[1459-1481] 9.39
SMART
Znf_C2H2_type (IPR013087) - T[98-120] 0.18 - T[126-148] 0.0019 - T[266-288] 0.05 - T[293-316] 3.3 - T[376-399] 0.0045 - T[582-604] 1.1 - T[610-633] 0.0047 - T[668-690] 0.0033 - T[695-718] 0.34 - T[908-928] 41.0 - T[1185-1207] 2.2E-4 - T[1213-1236] 0.0019 - T[1459-1481] 0.0032 - T[1487-1510] 0.12
SUPERFAMILY
Znf_C2H2_sf (IPR036236) - T[99-148] 7.97E-12 - T[266-311] 1.34E-5 - T[581-630] 2.25E-10 - T[669-714] 2.97E-7 - T[1186-1232] 6.38E-14 - T[1457-1505] 2.54E-5
ProSitePatterns
Znf_C2H2_type (IPR013087) - T[100-120] . - T[128-148] . - T[268-288] . - T[295-316] . - T[378-399] . - T[612-634] . - T[670-690] . - T[697-718] . - T[1187-1207] . - T[1215-1236] . - T[1461-1481] . - T[1489-1510] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RREB1_HUMAN 33.962 % 120 5.99E-27