- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S120.g12743.01.t
Possible name(s)
TBX2; TBX3; TBX4
Gene model
Location
S120 [45,350 / 54,427]
Amino acid sequence
Length: 714
>Harore.CG.MTP2014.S120.g12743.01.p
MGIPCRIISHGRMFPSFKVKVSGLNKNSKYIMLMDIVAADDCRYKFHNSRWMVAGKADPE
LPKRMYIHPDSPATGEQWMNRPGVSFHKLKLTNNIADPHGHTILNSMHKYQPRFHVVRCG
DLSKLPYCHFRTYVFKEMQFIAVTAYQNEKITQLKIDHNPFAKGFRDSGSGKREKRQHFH
LQDQMIVNSRIPDTVLNSQKLSSQEHQGRKRITESHEQDEFKRKCEKTQSTDTILSSSPD
RVSRAESSSNRIGDNESSSKIHDRTDQKRFSPYHHSTSSGGQLHDESMKSSSMFHSDSSG
SPDRRNSPEVTSSTTDIDVPNDRSSPYPGNSHDKPASRNTSSPRPSSPPPLTSSTTINSP
IPIHPGFSGLGAYPNALMQHYAAAAGLQPNYPYLHSSHLSALSAAMNVGGNVLHSAPGGF
NPALFQAAVGNNNSLGSIASSRSPSFLPGLHSATHNQALSSLLSSSSISSLNPYANFFPY
AAAYNPYIAAAAAAKGSEGIPGASTSSMALAERLYRQSAVAFSKSLGEAALSRSGAMSTS
PTSSSMSGASSMRYSPYKLPHLPPFGMVGGVLRPSPTSAVGEGSNSSRKFLGEQTTPRNR
LASGTSNSPSSPRSPEYHPIRRDSSEYDMRRQPERKGDDDRNTTAGGIGSAVQELRNMER
LVSGLEQRGRRSQDIPNDSQLFRIGHYDVCMFFAVLSQDDDSYLSKKRENSGLL
Nucleotide sequence
Length: 3,067
>Harore.CG.MTP2014.S120.g12743.01.t
ATGGGTATTCCGTGTAGGATAATCTCTCATGGGAGAATGTTTCCGTCTTTTAAAGTCAAA
GTATCCGGGCTGAACAAAAACTCGAAATACATAATGCTGATGGACATAGTCGCAGCTGAC
GATTGTCGTTACAAATTCCACAACTCGCGGTGGATGGTTGCTGGTAAAGCGGACCCGGAG
CTACCGAAACGCATGTATATTCATCCCGACTCCCCAGCCACCGGGGAACAGTGGATGAAC
AGACCAGGAGTTTCATTTCACAAACTCAAACTAACGAACAACATAGCCGATCCACATGGA
CATACGATTCTCAACTCGATGCACAAGTATCAACCGCGCTTCCACGTTGTTCGATGTGGG
GACCTGTCGAAGCTGCCATACTGTCATTTCCGCACATATGTATTCAAAGAAATGCAATTC
ATTGCAGTAACCGCTTATCAGAACGAAAAGATCACTCAATTAAAAATCGATCACAATCCG
TTCGCGAAGGGCTTTCGAGATTCTGGAAGTGGCAAACGAGAAAAAAGACAGCACTTTCAT
CTGCAAGATCAGATGATTGTCAATTCCCGCATACCAGACACTGTATTAAACTCACAAAAG
CTGTCGTCACAAGAGCATCAAGGGCGTAAACGAATTACGGAATCGCACGAGCAAGACGAA
TTTAAAAGAAAATGTGAAAAAACGCAATCTACAGACACAATATTATCTTCATCTCCCGAT
CGCGTCAGCAGGGCAGAGAGCAGCAGTAATCGGATTGGTGATAATGAATCGTCAAGCAAA
ATACATGACAGAACGGATCAGAAGAGGTTCTCTCCGTATCATCACTCTACCTCGAGCGGA
GGACAACTGCACGACGAATCTATGAAATCATCCTCCATGTTTCACTCCGATTCATCCGGT
TCTCCAGACCGAAGAAACAGCCCGGAGGTAACTTCATCTACGACAGATATCGACGTCCCC
AACGATCGTTCATCCCCGTATCCAGGCAACTCCCATGACAAGCCAGCGTCACGCAATACG
TCATCACCACGACCGTCTTCACCACCTCCACTGACATCATCAACCACTATCAATTCGCCG
ATACCCATTCATCCGGGCTTTTCTGGCCTCGGCGCTTATCCCAATGCACTGATGCAACAT
TACGCCGCTGCGGCAGGATTGCAACCTAACTATCCTTATCTTCATTCCAGTCATCTATCG
GCATTATCGGCTGCAATGAATGTGGGAGGAAACGTTTTACATAGCGCACCAGGTGGTTTT
AATCCTGCACTGTTCCAAGCCGCCGTAGGAAACAATAATAGCCTGGGTTCTATCGCTTCG
TCTCGATCACCCTCCTTCCTTCCTGGTCTCCATAGTGCGACGCATAATCAAGCGTTGTCA
TCACTTCTTTCTTCCAGTTCTATATCGAGTCTAAATCCGTATGCTAATTTCTTCCCATAC
GCCGCCGCGTACAATCCATATATTGCAGCAGCTGCTGCTGCCAAAGGAAGTGAGGGAATT
CCTGGAGCTTCGACGTCTTCAATGGCACTCGCTGAAAGATTGTATCGACAATCTGCTGTT
GCTTTTAGCAAAAGTCTTGGCGAAGCTGCCTTATCACGATCGGGTGCCATGTCCACTTCA
CCGACTTCATCTTCAATGAGCGGTGCATCGTCGATGCGATATTCTCCCTATAAATTACCC
CATTTACCCCCCTTTGGCATGGTAGGCGGAGTCTTACGGCCGTCGCCGACTTCGGCTGTC
GGGGAAGGCTCAAACAGTTCAAGAAAGTTTCTAGGAGAACAGACAACACCAAGAAATCGA
TTAGCATCCGGTACGAGCAATTCACCTAGTAGTCCTCGCAGTCCAGAATATCATCCTATT
CGTCGCGATTCAAGTGAATATGACATGAGACGACAACCGGAAAGAAAGGGAGACGACGAT
CGGAATACTACCGCTGGTGGAATAGGATCTGCCGTTCAAGAACTCAGAAATATGGAACGA
CTGGTGTCTGGTCTCGAGCAGAGAGGAAGGAGAAGCCAGGATATTCCAAACGATTCCCAA
TTGTTCCGAATCGGCCACTATGACGTGTGTATGTTCTTTGCTGTGTTATCGCAAGACGAC
GATTCTTATTTATCAAAGAAGCGTGAAAACTCAGGTTTATTGTGAGCTTACGAAGACGAA
GATTCTTCGAAAAAAAAGCGTCCTAAATGAGAATTTGAGCCGGTTTCCTTTTTCTCTCTA
TTCAAGAGTTGTGTTTCCAATGCGTATTATAGTGTGCGTTCATCGTCACCTTACTTTTTA
TCATAGAACATTTACATATCATACTGTATTTTACTGTTTTATATGATGTAAAGAGCAATA
ATGTGTCTGCTGCAGTAAAAAATACTAGTGCATACCACCTCGTAAAGTCGAGGTATGTTT
CATTCCTGCTAAAATCCCGTCTCTTCTCGTTTGTTTGGTACCAAATAACTCGCCTAGAAT
AATATGACAATAATATCACACGAAAGCAGCAGCATCTTGCAATGAATAGCCATTAAACCT
CAATATACGTCATTTGGCTACGAGATCTAAATCTAGTCTTTATGGAAGAGATCATTAGCA
GAATAGATAGATTGATCATATCACACACAGAACGAACAGGAAAAATTTTCTTTCGTAAGA
GTTTGGTCTTAATGTTCCCCTTGAAAAATTTACTCCTAATTTTAAACACCATTCGTCTTC
TCTATATTGCTAGTAATCTAGAACTCCAGAATATATTATTTAGAATGAAACGCGTATGTA
TGTCATCATAATCTTTCTTTATTTCTTATTTATTTTCAAAACAATATCCGAAAGTTCTTT
TGCGAATACTACTCTTATGCTATAGGTTACATTAATTTCCCTATACGGTTATCTCGCGTT
TTGTTCATTCGTTTTTGCTGTTATTATCTTATTTCTCCAGTTAAACTATATACTACTTAC
TGTATCGTCAATTCTTTTACTTAATTCCAAACGTGCAATGTTCTCGTGAAAGTGGAACAG
GCATGTTGACGATAAATAATAACGAATTTGTCATTATTTATCAAAAAACACAATAAACTG
TTCACGA
| PRINTS |
TF_T-box (IPR001699) - T[1-25] 1.9E-26 - T[66-79] 1.9E-26 - T[103-117] 1.9E-26 - T[138-151] 1.9E-26 - T[159-167] 1.9E-26 |
| SMART |
TF_T-box (IPR001699) - T[2-172] 3.1E-94 |
| Gene3D |
T-box_sf (IPR036960) - T[6-173] 9.9E-80 |
| CDD |
TF_T-box (IPR001699) - T[7-169] 2.05575E-103 |
| Pfam |
TF_T-box (IPR001699) - T[10-167] 6.0E-68 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[11-167] 8.95E-64 |
| PANTHER |
TF_T-box (IPR001699) - T[11-670] 1.6E-134 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[12-167] 61.255 |
| PRINTS |
TF_Brachyury (IPR002070) - T[46-66] 8.4E-6 - T[108-125] 8.4E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBX2_HUMAN | 80.588 % | 309 | 5.41E-95 |
| TBX3_HUMAN | 39.087 % | 303 | 1.92E-92 |
| TBX4_HUMAN | 64.151 % | 217 | 2.97E-62 |