- Transcript 'Boleac.CG.SB_v3.S134...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S121.g15624.01.t
Possible name(s)
CSDE1
Gene model
Location
S121 [111,294 / 120,515]
Amino acid sequence
Length: 1,106
>Harore.CG.MTP2014.S121.g15624.01.p
MEWMNQSPFFNDHLPNSQSFRPNFGSSAGSIALTTKQKALITGGMGNRFENKEKPVISHR
PLTRTTSCGVFNPPIRPSALNQHRALQRSSSYDTNRLNQSMPTLGSRSLGLSNSTSPVPS
GITSSNGYRSRETGVIEKLLLSYGFIRCADREGRLFFHYSQFHGEAPSLHINDEVEFDVS
MDTRTGKPVAVQVVKLKKGTVVFEVYSEERILGEVASPAVPQGGPQPFMGTGSNSFKPAE
RGEIIPGGKYGSLCYDRMGEVFFLPYTVNDLTNKSIQLQSGDKVSFYIATEKRTGILRAR
KITLVERAPPKRFTGIVTAMKESFGFIERADVVKEIFFHYSEVSNNVPDLHIGDHAEFSI
QERNGKEVATDVSLLPRGSVQLEEISNDIFIGTVEKPLPPKAPNKLQQTITSNNAGGDAS
TLNISNKSTNGNGSPQTSQQPCLTLAGIIQYTTPLGESRKIRFGEKDRAANCLYTLRQGD
KVSFLTVSDKRNGQQRAAGVNLLLNETIDSNGEKRERGIVAAVKEGFGFIKCLERDSRLF
FHCCELLDPNHNVRMSDEVEFTVLNDPVAEKHRLHATRISILPKGTVIFHTVSEETYHGI
VELLPGSAAGANPECLISPALGPNPGLISYEADQENHQIPFTMKEFIEWTDASVLSNGSE
VEFRICTVKRTNAKNALDIKLTKPAVSTSDMIRTIVSGLSTLPVTDDAFTTAVNHTTPRT
PIITPPMKMVPLIEDVTVSAEAFKLDPVPEKKSLFASSPKLSQSRPTVPVLTSIRPCNGS
NGLSSKLDMTLSPRSKDLSSEVKEEKMLGWISTLKETFGFIETSDHMSEIFFHFSELLDS
PEKYNVNTPVVYIKGIKDEKPCALQVTIANEKELPFEEDIDPTIYEGKSMLNESCIVVKA
LKSANQTQGMYHGTIEYKGSHLDTEAKQILYSPISLNDRRDLVQSSDKVTFQICHDSVNN
TSRAINVTVKRDIIQATIESIKGEYGFINYEVKNADASSTGKLFFHMSEVREGADEMTTG
TLVEFSVIFNQRTGKHSASNIRCLESKRQRPMRLRVRSACIDQSGPVVTVIRQPRGPSDD
KGFTLQRHSSNNDSSEPDSMKAESSN
Nucleotide sequence
Length: 3,907
>Harore.CG.MTP2014.S121.g15624.01.t
GTTAACTGGCACGAAGCGCAGTTTGGTGTTGGGAGTTTTTTGGTCACTTTGAAAGAATTG
ATTAATGGAATAAAACTCATTCAAGAATTAAGGCATACAACAAGTTAAAAATAAGCAGCC
ATCAGTGTATGAAGACAAGTATTTCACAGTATAACAGACACCATTTTATGTAAGAAACAG
AAAGGCCTCCAACAATGGAATGGATGAATCAGTCTCCCTTCTTCAACGATCACCTGCCCA
ACAGTCAATCCTTCCGTCCGAACTTTGGAAGTTCAGCTGGGAGCATTGCCTTAACTACAA
AACAAAAAGCTCTCATCACAGGAGGAATGGGAAACCGATTCGAGAACAAAGAAAAGCCAG
TTATTAGTCACAGACCACTTACGAGAACAACAAGCTGTGGAGTTTTCAATCCTCCCATAC
GTCCTTCAGCACTCAATCAACACAGAGCTCTGCAGCGCTCATCGAGCTATGACACTAACC
GTCTAAATCAGTCCATGCCCACGCTTGGGTCACGGTCATTAGGACTGTCAAACTCTACGA
GTCCCGTTCCGTCCGGCATCACCTCAAGCAACGGTTATAGAAGTCGCGAAACTGGAGTTA
TAGAAAAGCTCTTGTTATCATACGGGTTCATCCGATGCGCTGACAGAGAAGGACGTCTAT
TTTTCCACTACAGTCAGTTTCATGGTGAAGCACCTTCCTTACATATCAATGATGAAGTGG
AATTTGATGTTTCCATGGACACAAGAACAGGCAAGCCGGTGGCTGTGCAAGTCGTCAAGT
TGAAGAAAGGAACCGTGGTTTTCGAAGTTTATAGCGAAGAGCGAATTCTCGGCGAAGTTG
CCAGCCCTGCTGTCCCGCAAGGAGGCCCTCAACCATTCATGGGAACAGGGTCGAACAGTT
TCAAACCCGCCGAAAGGGGAGAGATAATACCGGGGGGAAAATATGGCAGTCTGTGCTATG
ATAGAATGGGGGAGGTCTTCTTTCTGCCATACACAGTCAACGACTTAACAAACAAAAGTA
TTCAGCTGCAGTCAGGCGACAAAGTTTCGTTCTATATTGCCACAGAGAAAAGAACGGGAA
TTCTCCGGGCACGCAAAATAACTTTGGTTGAGCGTGCGCCGCCAAAGCGATTCACTGGTA
TAGTGACTGCTATGAAAGAGTCATTTGGATTTATAGAAAGAGCAGATGTTGTCAAAGAGA
TATTTTTCCACTACAGCGAGGTCAGCAACAACGTCCCTGATCTGCATATTGGTGATCACG
CCGAGTTTAGTATCCAAGAAAGAAATGGCAAAGAAGTCGCTACAGACGTAAGTCTCCTTC
CTCGTGGTTCTGTTCAGCTCGAGGAGATTTCGAATGATATCTTCATCGGAACTGTAGAAA
AACCGCTTCCTCCTAAAGCACCGAATAAATTGCAGCAAACTATCACTAGCAACAATGCAG
GTGGAGATGCCTCCACTCTCAATATCAGCAACAAATCAACAAATGGAAACGGCTCACCTC
AGACAAGCCAGCAACCATGTCTAACACTCGCCGGTATCATACAGTACACCACACCTCTCG
GCGAATCAAGGAAAATACGTTTCGGAGAGAAGGACAGAGCTGCTAATTGCTTGTACACAT
TACGTCAAGGCGATAAGGTCTCTTTCCTCACTGTGTCTGACAAACGAAATGGCCAGCAAA
GAGCAGCTGGCGTTAATCTCCTGCTCAACGAAACTATTGATAGCAATGGGGAAAAAAGAG
AACGGGGCATCGTAGCCGCAGTAAAAGAAGGATTCGGCTTCATCAAATGCCTGGAACGAG
ACTCCCGCCTTTTCTTTCACTGCTGCGAGCTGCTCGATCCCAATCATAATGTCAGAATGT
CCGATGAGGTGGAGTTCACTGTTCTGAATGACCCGGTGGCTGAAAAACACAGGCTGCATG
CAACAAGAATTTCTATACTACCTAAAGGAACTGTGATATTTCATACTGTCTCAGAAGAAA
CTTACCATGGAATTGTTGAACTGTTACCTGGATCAGCAGCTGGTGCAAACCCTGAATGCC
TGATAAGTCCAGCCCTTGGTCCAAATCCTGGATTAATAAGTTACGAAGCTGATCAGGAAA
ATCACCAGATTCCATTCACAATGAAAGAATTCATTGAGTGGACGGACGCTTCAGTACTCT
CTAATGGTAGTGAGGTTGAGTTTCGAATTTGCACAGTCAAGCGTACAAATGCTAAAAATG
CACTTGACATCAAGTTGACAAAACCAGCTGTGTCTACCAGTGACATGATCAGGACCATTG
TCAGCGGACTCTCTACTTTACCAGTCACTGATGATGCGTTTACCACTGCAGTCAATCACA
CAACTCCTAGAACCCCGATAATAACACCTCCGATGAAAATGGTTCCACTCATTGAAGATG
TGACTGTATCTGCCGAAGCATTCAAACTGGATCCCGTGCCCGAGAAAAAATCACTATTTG
CCTCCAGTCCAAAATTGTCCCAAAGCAGACCCACGGTACCCGTACTCACGTCTATCCGAC
CGTGCAATGGATCAAATGGACTGTCGAGTAAACTGGACATGACACTTTCCCCAAGATCGA
AAGACTTGTCATCCGAAGTCAAGGAAGAGAAAATGCTTGGCTGGATCAGCACACTGAAGG
AAACTTTCGGCTTCATCGAAACTTCAGACCACATGTCCGAAATATTTTTCCACTTCAGCG
AGCTGCTGGATTCACCCGAAAAGTATAATGTCAATACTCCAGTTGTCTACATAAAAGGCA
TCAAAGATGAAAAACCTTGTGCTTTGCAAGTGACCATTGCTAACGAAAAGGAGCTCCCGT
TCGAAGAAGATATTGATCCTACCATCTACGAAGGCAAGTCAATGCTCAATGAATCTTGTA
TTGTAGTAAAAGCATTGAAATCTGCAAACCAGACTCAAGGCATGTACCATGGTACAATAG
AGTACAAAGGAAGCCATCTTGACACAGAAGCAAAGCAAATCCTTTATAGTCCAATAAGCT
TGAATGACAGACGTGACCTTGTGCAATCGAGTGATAAGGTTACCTTCCAGATTTGCCACG
ACTCTGTTAACAACACCAGCCGAGCCATTAATGTTACCGTGAAACGTGATATTATACAAG
CAACAATTGAAAGCATTAAAGGAGAGTACGGTTTTATCAACTACGAAGTCAAGAATGCCG
ATGCCAGCTCAACCGGGAAACTGTTTTTCCACATGTCAGAGGTGAGAGAAGGGGCAGATG
AAATGACCACTGGCACTCTGGTAGAATTCTCAGTCATCTTCAATCAGAGAACAGGTAAGC
ACTCAGCATCGAATATACGTTGCCTCGAATCAAAGCGACAGAGGCCAATGCGGTTACGCG
TCCGCAGTGCCTGTATTGATCAAAGTGGCCCGGTAGTCACAGTCATTCGTCAACCGAGAG
GTCCTAGTGATGACAAGGGATTTACTCTGCAACGACATTCCAGCAACAATGATAGCTCTG
AACCTGATAGCATGAAAGCTGAAAGCAGCAACTGAAGAGTTGAAAGGTGCAAACTTTGAT
TTCATCCGTCCATTGGAACATGGCAATATCGTATCCATTTGTTAGCTTGTTTGTTTTTTA
TTTGCCAAAGGAAAGTAAGTCACATACCTCTGTGTGTCACTGAGCTTCAGCTCCCTTTAA
CATTGCACAGCTGTAGCCTACCGTCACTCTGCGTTTTTTATAGTTTCTAGTTTCCATTAA
ATCATTATTTTTTGCTGTTGCTGTTGCTGCTGCGGTTATATTCTCTGTAAGCTTATTTCT
ACTATGTCCGTTATTATTGTTACCTAAGTTGCACCATTTCGACTCTATATAGATGATATC
AGATGGCTTGTGGAGGATATTATCATTGCTGTTCTCCTATATCTGTTAACTGAAGGTTGT
ACCTTTT
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[127-201] 3.21E-16 - T[311-379] 9.14E-14 - T[511-587] 1.9E-12 - T[805-871] 9.21E-10 - T[974-1044] 1.24E-9 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[133-195] 1.4E-11 - T[314-373] 1.1E-13 - T[517-570] 9.5E-7 - T[809-867] 7.6E-6 - T[976-1042] 1.5E-6 |
| SMART |
CSD (IPR011129) - T[133-196] 1.4E-11 - T[314-375] 6.8E-12 - T[517-582] 7.8E-5 - T[808-869] 3.6 - T[975-1044] 0.053 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[143-162] . - T[324-343] . - T[818-837] . |
| CDD |
CSP_DNA-bd (IPR002059) - T[143-195] 2.80414E-10 - T[314-374] 5.11406E-11 - T[818-868] 2.50768E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSDE1_HUMAN | 40.799 % | 358 | 5.84E-109 |