- Transcript 'Boleac.CG.SB_v3.S134...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S121.g15624.02.t
Possible name(s)
CSDE1
Gene model
Location
S121 [111,026 / 121,674]
Amino acid sequence
Length: 1,098
>Harore.CG.MTP2014.S121.g15624.02.p
MEWMNQSPFFNDHLPNSQSFRPNFGSSAGSIALTTKQKALITGGMGNRFENKEKPVISHR
PLTRTTSCGVFNPPIRPSALNQHRALQRSSSYDTNRLNQSMPTLGSRSLGLSNSTSPVPS
GITSSNGYRSRETGVIEKLLLSYGFIRCADREGRLFFHYSQFHGEAPSLHINDEVEFDVS
MDTRTGKPVAVQVVKLKKGTVVFEVYSEERILGEVASPAVPQGGPQPFMGTGSNSFKPAE
RGEIIPGGKYGSLCYDRMGEVFFLPYTVNDLTNKSIQLQSGDKVSFYIATEKRTGILRAR
KITLVERAPPKRFTGIVTAMKESFGFIERADVVKEIFFHYSEVSNNVPDLHIGDHAEFSI
QERNGKEVATDVSLLPRGSVQLEEISNDIFIGTVEKPLPPKAPNKLQQTITSNNAGGDAS
TLNISNKSTNGNGSPQTSQQPCLTLAGIIQYTTPLGESRKIRFGEKDRAANCLYTLRQGD
KVSFLTVSDKRNGQQRAAGVNLLLNETIDSNGEKRERGIVAAVKEGFGFIKCLERDSRLF
FHCCELLDPNHNVRMSDEVEFTVLNDPVAEKHRLHATRISILPKGTVIFHTVSEETYHGI
VELLPGSAAGANPECLISPALGPNPGLISYEADQENHQIPFTMKEFIEWTDASVLSNGSE
VEFRICTVKRTNAKNALDIKLTKPAVSTSDMIRTIVSGLSTLPVTDDAFTTAVNHTTPRT
PIITPPMKMVPLIEDVTVSAEAFKLDPVPEKKSLFASSPKLSQSRPTVPVLTSIRPCNGS
NGLSSKLDMTLSPRSKDLSSEVKEEKMLGWISTLKETFGFIETSDHMSEIFFHFSELLDS
PEKYNVNTPVVYIKGIKDEKPCALQVTIANEKELPFEEDIDPTIYEGIVVKALKSANQTQ
GMYHGTIEYKGSHLDTEAKQILYSPISLNDRRDLVQSSDKVTFQICHDSVNNTSRAINVT
VKRDIIQATIESIKGEYGFINYEVKNADASSTGKLFFHMSEVREGADEMTTGTLVEFSVI
FNQRTGKHSASNIRCLESKRQRPMRLRVRSACIDQSGPVVTVIRQPRGPSDDKGFTLQRH
SSNNDSSEPDSMKAESSN
Nucleotide sequence
Length: 5,297
>Harore.CG.MTP2014.S121.g15624.02.t
TGAGAATCGTAAGTCTATTACGTCACTATAGTAAGGAAGAATCCAAAATAATGAAGGAAT
GTTTAAAAAAATAAGCGGTTTATTATTGCAAGCAAAGGAAAAGCGTTCAATGCTCAAGAT
AGAAATTCGACTCGAAAAATTCGTGCAGTACAAAGAGTTGCTAAAATGGGACTAAATTTA
GGTTGTACGTCCCCCTAGTGATCTTCTCTTGTTGACGTATTTGAGCAAAAAAGTTTGGGT
TGTTCTTCTCAACAGAGCAGGGTCCTAAGTTAACTGGCACGAAGCGCAGTTTGGTGTTGG
GAGTTTTTTGGTCACTTTGAAAGAATTGATTAATGGAATAAAACTCATTCAAGAATTAAG
GCATACAACAAGTTAAAAATAAGCAGCCATCAGTGTATGAAGACAAGTATTTCACAGTAT
AACAGACACCATTTTATAAACAGAAAGGCCTCCAACAATGGAATGGATGAATCAGTCTCC
CTTCTTCAACGATCACCTGCCCAACAGTCAATCCTTCCGTCCGAACTTTGGAAGTTCAGC
TGGGAGCATTGCCTTAACTACAAAACAAAAAGCTCTCATCACAGGAGGAATGGGAAACCG
ATTCGAGAACAAAGAAAAGCCAGTTATTAGTCACAGACCACTTACGAGAACAACAAGCTG
TGGAGTTTTCAATCCTCCCATACGTCCTTCAGCACTCAATCAACACAGAGCTCTGCAGCG
CTCATCGAGCTATGACACTAACCGTCTAAATCAGTCCATGCCCACGCTTGGGTCACGGTC
ATTAGGACTGTCAAACTCTACGAGTCCCGTTCCGTCCGGCATCACCTCAAGCAACGGTTA
TAGAAGTCGCGAAACTGGAGTTATAGAAAAGCTCTTGTTATCATACGGGTTCATCCGATG
CGCTGACAGAGAAGGACGTCTATTTTTCCACTACAGTCAGTTTCATGGTGAAGCACCTTC
CTTACATATCAATGATGAAGTGGAATTTGATGTTTCCATGGACACAAGAACAGGCAAGCC
GGTGGCTGTGCAAGTCGTCAAGTTGAAGAAAGGAACCGTGGTTTTCGAAGTTTATAGCGA
AGAGCGAATTCTCGGCGAAGTTGCCAGCCCTGCTGTCCCGCAAGGAGGCCCTCAACCATT
CATGGGAACAGGGTCGAACAGTTTCAAACCCGCCGAAAGGGGAGAGATAATACCGGGGGG
AAAATATGGCAGTCTGTGCTATGATAGAATGGGGGAGGTCTTCTTTCTGCCATACACAGT
CAACGACTTAACAAACAAAAGTATTCAGCTGCAGTCAGGCGACAAAGTTTCGTTCTATAT
TGCCACAGAGAAAAGAACGGGAATTCTCCGGGCACGCAAAATAACTTTGGTTGAGCGTGC
GCCGCCAAAGCGATTCACTGGTATAGTGACTGCTATGAAAGAGTCATTTGGATTTATAGA
AAGAGCAGATGTTGTCAAAGAGATATTTTTCCACTACAGCGAGGTCAGCAACAACGTCCC
TGATCTGCATATTGGTGATCACGCCGAGTTTAGTATCCAAGAAAGAAATGGCAAAGAAGT
CGCTACAGACGTAAGTCTCCTTCCTCGTGGTTCTGTTCAGCTCGAGGAGATTTCGAATGA
TATCTTCATCGGAACTGTAGAAAAACCGCTTCCTCCTAAAGCACCGAATAAATTGCAGCA
AACTATCACTAGCAACAATGCAGGTGGAGATGCCTCCACTCTCAATATCAGCAACAAATC
AACAAATGGAAACGGCTCACCTCAGACAAGCCAGCAACCATGTCTAACACTCGCCGGTAT
CATACAGTACACCACACCTCTCGGCGAATCAAGGAAAATACGTTTCGGAGAGAAGGACAG
AGCTGCTAATTGCTTGTACACATTACGTCAAGGCGATAAGGTCTCTTTCCTCACTGTGTC
TGACAAACGAAATGGCCAGCAAAGAGCAGCTGGCGTTAATCTCCTGCTCAACGAAACTAT
TGATAGCAATGGGGAAAAAAGAGAACGGGGCATCGTAGCCGCAGTAAAAGAAGGATTCGG
CTTCATCAAATGCCTGGAACGAGACTCCCGCCTTTTCTTTCACTGCTGCGAGCTGCTCGA
TCCCAATCATAATGTCAGAATGTCCGATGAGGTGGAGTTCACTGTTCTGAATGACCCGGT
GGCTGAAAAACACAGGCTGCATGCAACAAGAATTTCTATACTACCTAAAGGAACTGTGAT
ATTTCATACTGTCTCAGAAGAAACTTACCATGGAATTGTTGAACTGTTACCTGGATCAGC
AGCTGGTGCAAACCCTGAATGCCTGATAAGTCCAGCCCTTGGTCCAAATCCTGGATTAAT
AAGTTACGAAGCTGATCAGGAAAATCACCAGATTCCATTCACAATGAAAGAATTCATTGA
GTGGACGGACGCTTCAGTACTCTCTAATGGTAGTGAGGTTGAGTTTCGAATTTGCACAGT
CAAGCGTACAAATGCTAAAAATGCACTTGACATCAAGTTGACAAAACCAGCTGTGTCTAC
CAGTGACATGATCAGGACCATTGTCAGCGGACTCTCTACTTTACCAGTCACTGATGATGC
GTTTACCACTGCAGTCAATCACACAACTCCTAGAACCCCGATAATAACACCTCCGATGAA
AATGGTTCCACTCATTGAAGATGTGACTGTATCTGCCGAAGCATTCAAACTGGATCCCGT
GCCCGAGAAAAAATCACTATTTGCCTCCAGTCCAAAATTGTCCCAAAGCAGACCCACGGT
ACCCGTACTCACGTCTATCCGACCGTGCAATGGATCAAATGGACTGTCGAGTAAACTGGA
CATGACACTTTCCCCAAGATCGAAAGACTTGTCATCCGAAGTCAAGGAAGAGAAAATGCT
TGGCTGGATCAGCACACTGAAGGAAACTTTCGGCTTCATCGAAACTTCAGACCACATGTC
CGAAATATTTTTCCACTTCAGCGAGCTGCTGGATTCACCCGAAAAGTATAATGTCAATAC
TCCAGTTGTCTACATAAAAGGCATCAAAGATGAAAAACCTTGTGCTTTGCAAGTGACCAT
TGCTAACGAAAAGGAGCTCCCGTTCGAAGAAGATATTGATCCTACCATCTACGAAGGTAT
TGTAGTAAAAGCATTGAAATCTGCAAACCAGACTCAAGGCATGTACCATGGTACAATAGA
GTACAAAGGAAGCCATCTTGACACAGAAGCAAAGCAAATCCTTTATAGTCCAATAAGCTT
GAATGACAGACGTGACCTTGTGCAATCGAGTGATAAGGTTACCTTCCAGATTTGCCACGA
CTCTGTTAACAACACCAGCCGAGCCATTAATGTTACCGTGAAACGTGATATTATACAAGC
AACAATTGAAAGCATTAAAGGAGAGTACGGTTTTATCAACTACGAAGTCAAGAATGCCGA
TGCCAGCTCAACCGGGAAACTGTTTTTCCACATGTCAGAGGTGAGAGAAGGGGCAGATGA
AATGACCACTGGCACTCTGGTAGAATTCTCAGTCATCTTCAATCAGAGAACAGGTAAGCA
CTCAGCATCGAATATACGTTGCCTCGAATCAAAGCGACAGAGGCCAATGCGGTTACGCGT
CCGCAGTGCCTGTATTGATCAAAGTGGCCCGGTAGTCACAGTCATTCGTCAACCGAGAGG
TCCTAGTGATGACAAGGGATTTACTCTGCAACGACATTCCAGCAACAATGATAGCTCTGA
ACCTGATAGCATGAAAGCTGAAAGCAGCAACTGAAGAGTTGAAAGGTGCAAACTTTGATT
TCATCCGTCCATTGGAACATGGCAATATCGTATCCATTTGTTAGCTTGTTTGTTTTTTAT
TTGCCAAAGGAAAGTAAGTCACATACCTCTGTGTGTCACTGAGCTTCAGCTCCCTTTAAC
ATTGCACAGCTGTAGCCTACCGTCACTCTGCGTTTTTTATAGTTTCTAGTTTCCATTAAA
TCATTATTTTTTGCTGTTGCTGTTGCTGCTGCGGTTATATTCTCTGTAAGCTTATTTCTA
CTATGTCCGTTATTATTGTTACCTAAGTTGCACCATTTCGACTCTATATAGATGATATCA
GATGGCTTGTGGAGGATATTATCATTGCTGTTCTCCTATATCTGTTAACTGAAGGTTGTA
CCTTTTGCAATGGGCTTATTGTTGTTCCATTGATGCTCTACTTTACGCTTGGTCATAGGC
AAACCTACAATGTATTTGAGCTGCATAGGTATCGTTTGGTTGTGATGTTCTCATGTGACT
CCGTTTTTCACTCTGTAAATAGGTGTGTTCTGCGCAATTCTGTTTGGTGACCATTGTGGT
TCGTTATCTGTGATGCGTTTCATTCATTCTGTCATGCAATAGTGACGACATGCAGTTATT
TTCCCTTGTTTAGAACAGAATTGTATTTCCTTCTTATCTGATTTCATGTAGCATTTTTGC
TGAGGTTCCTCCTGTGAACCAGATTTGGTGTAAGTGGCCGATTTTTCCTGCATGACAGTA
TTTTCTGTATCATTTTATATATGTTTTGACCCCTACGTAGAGAGGAACGCCTGCACAGAA
CTTACTTTGTGTCAGACTAAAAAAAATGGAAAAAATCCTAATTTCTCTTGCATGACTTAT
TTCTTCATTAATGCATTCAGGCTTATTTTTTTAACTACTACGACTAGTGTGAACCCACTC
TAATGCATTACTGGGATGAGTTTTGTATTAAATTTATTTACCAACTCAGCAAGGACACAT
TTTTTTCAAATCTCTTTTTATATCCACGTGTGTTTCTGCCAAAGCATATTCCTCGTTTTT
TTTCACTGTTTCATCCCATTCTACTAGCGCTGGAAGCTGTGATACGATTTTTTCAAGCCA
ACGCCGTTCAATTGAATTCTCCTGCAATTGAACTATGACCTGTAATTACTTGCCATCCAC
TTCATGCTTTATCTTATCTATTTGTAAGGTGCTCGGGCATTGAAGCAAACTGGGCAATAG
CCAGCCATGCTAAGTTGAATGCAGAATTTCCAGTACTGTTTAATTTCTCTCAGAAATGTA
TTTATTGCAGTTTGTTATGCAGTCTAGAGAGCAACGGACTTTAAATTCAGTGCCCTGATG
AAAATACGTATATATACGTATACATATTGGATAAAAAGCTTTGGTATCAGGTCAATCTTC
TGATGTTAATATCAGCCACATGCATTACATTGAATGTGTTCCCTTTATTACTGCTGGCAC
CTTGTTACGTTATTGTTCTATGTTAATTTGGTGAGAATACTATCCTTTGGTTTTGCAATA
CAATTAGTTCCAAACCA
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[127-201] 3.21E-16 - T[311-379] 8.95E-14 - T[511-587] 1.9E-12 - T[805-871] 9.21E-10 - T[966-1036] 1.22E-9 |
| SMART |
CSD (IPR011129) - T[133-196] 1.4E-11 - T[314-375] 6.8E-12 - T[517-582] 7.8E-5 - T[808-869] 3.6 - T[967-1036] 0.053 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[133-195] 1.4E-11 - T[314-373] 1.1E-13 - T[517-570] 9.4E-7 - T[809-867] 7.6E-6 - T[968-1034] 1.5E-6 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[143-162] . - T[324-343] . - T[818-837] . |
| CDD |
CSP_DNA-bd (IPR002059) - T[143-195] 3.22346E-10 - T[314-374] 5.76458E-11 - T[818-868] 2.64005E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSDE1_HUMAN | 40.799 % | 358 | 5.74E-109 |