- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S123.g15970.01.t
Possible name(s)
CCT4; CCT7; TCP1
Gene model
Location
S123 [113,928 / 117,382]
Amino acid sequence
Length: 541
>Harore.CG.MTP2014.S123.g15970.01.p
MMQPQIILLKEGTDTSQGVPQLVSNINACQVVAEAIRTTLGPLGMDKLIVDNNGKSTISN
DGATILKLLDIVHPAAKTLVDISRSQDAEVGDGTTTVTLLAAEFLKQVKQFVEDGVHPRV
IVRAYRLATQLAIEKIREIQVTIKKDDPKEWRMLLEKCAGTALNSKLVAAYKGMFAPMIV
DAVTMLDELLPLNMIGIKKVSGGSISDTKLVAGVAFKKTFSYAGFEMQPKKYKKPKIALL
NVELELKSEKENAEIRLQNVADYQAVVDAEWFILYEKLQAICDSGAKVVLSKLPIGDVAT
QYFADRDMFCAGRVQEVDLKRTMKACGGVIQTSVQDLTPEILGTCEIFEEEQVGGERYNF
FRGCPQGKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDAVVAGGGAIEMELSKHL
RDHSRSIRGKQQMLIAAYAKALEIIPRQLCDNAGFDATNILNKLRQAHAHGNLWHGVDIN
AEDVANNFDAYVWEPSLIKVNALTAASEAACLILSVDETIKNPRSSVDQAPAMGRGRGRP
M
Nucleotide sequence
Length: 1,626
>Harore.CG.MTP2014.S123.g15970.01.t
ATGATGCAACCACAAATTATCCTGCTGAAAGAGGGGACAGATACCTCACAAGGCGTTCCA
CAGTTAGTGAGCAACATTAACGCCTGTCAGGTGGTTGCCGAGGCGATCAGAACAACACTG
GGGCCACTAGGAATGGATAAATTGATTGTTGATAACAATGGAAAATCTACAATTTCTAAC
GATGGTGCAACGATTCTTAAGCTCTTGGACATTGTTCATCCTGCAGCGAAAACTCTGGTC
GATATCTCTCGTTCACAAGATGCTGAGGTTGGAGATGGAACTACTACTGTGACATTATTA
GCTGCTGAATTTTTGAAACAAGTCAAGCAATTTGTTGAAGATGGAGTTCATCCTCGAGTG
ATAGTGCGAGCTTATCGTTTGGCAACGCAGCTTGCTATCGAGAAGATCCGAGAAATTCAA
GTTACCATCAAGAAAGATGACCCTAAAGAGTGGAGAATGTTGCTAGAAAAGTGTGCTGGC
ACTGCACTCAATTCTAAGCTTGTTGCCGCGTACAAAGGTATGTTTGCTCCCATGATTGTT
GATGCAGTGACGATGCTGGATGAGCTTCTTCCTCTCAATATGATTGGAATTAAGAAAGTT
TCTGGTGGATCAATCAGTGATACCAAATTGGTTGCTGGTGTTGCCTTCAAGAAAACTTTT
TCCTATGCCGGATTTGAAATGCAGCCAAAAAAATATAAAAAACCTAAAATAGCTTTGCTC
AACGTCGAACTAGAATTGAAATCAGAGAAGGAAAATGCAGAGATAAGACTCCAAAATGTT
GCTGATTACCAAGCCGTTGTTGATGCAGAATGGTTTATTTTGTATGAAAAACTTCAAGCC
ATTTGTGACAGTGGTGCCAAGGTCGTGCTTAGTAAACTCCCCATAGGTGATGTTGCTACC
CAGTATTTTGCTGATAGGGACATGTTCTGCGCAGGAAGAGTACAGGAAGTTGATTTGAAA
CGTACTATGAAGGCATGTGGAGGTGTTATTCAAACCTCGGTGCAAGATCTAACTCCAGAA
ATTCTTGGGACTTGTGAAATTTTTGAAGAGGAGCAAGTTGGAGGTGAAAGATACAATTTC
TTCCGTGGGTGCCCACAAGGAAAGACCTGTACCTTTATATTACGTGGGGGTGCTGAACAG
TTCATGGAGGAAACGGAAAGGTCACTTCATGATGCTATCATGATTGTCCGTAGAGCTATA
AAGAATGATGCCGTGGTTGCTGGAGGAGGAGCTATTGAAATGGAACTGAGCAAACATTTG
AGAGATCATTCTCGATCCATCAGAGGAAAACAACAGATGTTGATAGCTGCTTATGCAAAG
GCATTGGAAATCATTCCAAGACAACTGTGCGATAATGCAGGGTTCGATGCCACCAACATT
CTTAATAAATTAAGACAGGCTCATGCTCATGGAAATCTATGGCACGGTGTTGATATAAAC
GCTGAAGATGTTGCGAACAATTTTGATGCTTATGTATGGGAACCCTCACTGATTAAAGTC
AACGCTCTCACTGCTGCCTCTGAGGCAGCTTGTCTGATACTTTCAGTGGATGAAACTATA
AAAAATCCAAGATCCAGTGTAGATCAGGCTCCAGCAATGGGTAGAGGTCGGGGAAGACCG
ATGTGA
| Gene3D |
GROEL-like_equatorial_sf (IPR027413) - T[1-146] 7.5E-52 - T[367-526] 3.4E-50 |
| TIGRFAM |
Chap_CCT_eta (IPR012720) - T[3-525] 1.1E-263 |
| CDD |
Chap_CCT_eta (IPR012720) - T[5-525] 0.0 |
| PANTHER |
Chap_CCT_eta (IPR012720) - T[11-526] 6.9E-209 |
| PANTHER |
Cpn60/TCP-1 (IPR002423) - T[11-526] 6.9E-209 |
| SUPERFAMILY |
GROEL-like_equatorial_sf (IPR027413) - T[15-143] 3.66E-86 - T[403-522] 3.66E-86 |
| Pfam |
Cpn60/TCP-1 (IPR002423) - T[32-522] 8.6E-156 |
| PRINTS |
Chaperone_TCP-1 (IPR017998) - T[34-50] 2.1E-29 - T[56-74] 2.1E-29 - T[86-105] 2.1E-29 - T[371-393] 2.1E-29 - T[405-417] 2.1E-29 |
| ProSitePatterns |
Chaperonin_TCP-1_CS (IPR002194) - T[37-49] . - T[58-74] . - T[86-94] . |
| Gene3D |
TCP-1-like_intermed_sf (IPR027410) - T[147-216] 1.8E-16 |
| SUPERFAMILY |
TCP-1-like_intermed_sf (IPR027410) - T[154-211] 4.88E-25 - T[366-402] 4.88E-25 |
| SUPERFAMILY |
GroEL-like_apical_dom_sf (IPR027409) - T[207-376] 7.33E-47 |
| Gene3D |
GroEL-like_apical_dom_sf (IPR027409) - T[217-366] 2.0E-67 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TCPA_HUMAN | 34.015 % | 296 | 1.28E-93 |
| TCPH_HUMAN | 78.008 % | 874 | 0 |
| TCPD_HUMAN | 33.595 % | 287 | 1.83E-90 |