- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S124.g12057.01.t
Possible name(s)
TGFBRAP1; VPS39
Gene model
Location
S124 [129,113 / 134,241]
Amino acid sequence
Length: 915
>Harore.CG.MTP2014.S124.g12057.01.p
MSKVFELKFLVGRESIMGNKPRIMIESMATSGKNLFVGTTDGTICHFVLNEIPVNPGRPS
PSDGSDLKIALQNKTRVSTKKPVVQIETAPELKCLLINSDGCIYAYSMMDLSPSFEIFGK
LKNVSRFYVNSYPIHANPFAVEICVSYSKKRSVQLYQVQEDSIVPLKEVSLPEHPRSLAL
DGRHMCVGTLSGYLMVDMDSNTRQDLFPVVDTKLLVHRVAPSEFLLAAPNNLGVFVTSAG
ISQRPPIQWSEGTFQASYIYPYVVAMNDEFITIHSVLDQQQKQTLPFQGGIVLFESVPDK
LLVCTGKDIFILVLIPYETQITTLLNQSKVDEAMELAKAFRKCMSRDKYQGMMSRIYKRA
GFVHFRNLFFDAAEAMFTLGRIDAREIIVLYPGLLPDSSTVRNSSDLHSITNIHDMCHHD
NVKIQECEEFLASYLQLHPLPIKSDHSDSSTNPFAKEKLENNPEYRYDFFHASLKIFSKL
HSTKEILFLFQGEHEPISKTIPARSPLFFEFSKKFDVVSAILDEHGCFHARAMFTLLGDR
VDDAMQQWKALAVGIKKDLDFPGLSFIAEQLGKYYNDVSLLWKHVAWILELDQHVGVSIF
TKHLPLSEQSSKSESKEEGNLPKTDDIIAFLHHHPQSVTTYLEYLVYTCRVQKEKFHTHL
AVLYLDSVLNLLAESDKNEEEFAQAREKLQALLKKSSLYRVSLILSKVKDTDLHEECVIL
LGKLGEHEKSLDILVNKMRDQMAAEEYCLTQSTDMDSRKQLFRSLLSVYLSKVSISSSKS
SRSAMAVVDLLNKYAENYNAQEVLNVLPKTWSVTLLTRFLSRTLRIQRHGVCTDQLQHKL
ERCENNNVKKEHIQVLNKCVSINEDKICQVCNRLFQDTDCTLYPNGIAVHKHCGTNKFVC
PVTGKLFKTLPFPKH
Nucleotide sequence
Length: 4,193
>Harore.CG.MTP2014.S124.g12057.01.t
TAGACTCTAATTTGCTTGGTATCTTCAAGCAATCTTTCGACTATAAGATATAAAATAAAC
GCTAGTAACCATGTTAATAAGCAATATAAACATTATTACAATCTGTTTTACATATGGTAA
AATACCACACAATAATTGTATGCTGACATAGTTCAGTAAGGTAACAAAAGTGCAGGAACA
TAGGAAACATAATAATGCAAACCCAGCACTGACCTTTTTTATTATTATTATTACTTAACA
TTTCATTTTATAGTTTACTTTAATATGAAAAGCTAATACAGATACTAAAAAGTTTTGAGA
TATATAAAATTATCCCGAACTTAATTCACTGCAAATCACAATGGCAGGGGGCAAAACAGA
TATGGAGAGGATAGGCCTCTTCAGTGAGGTTGGGTACACAACAATAGGGGATCGATACCC
TAAAGTTGATCCGAACAGTCGACCATTCCATGAAGATGCCTACAAAAGCAAACAAATATT
ACCAGGAGGGAGTAAAACCTGTTCAGCGTTGCAAGCTGGATACTTCGACAACCAGTTCAA
ACGAATTATGGAAAAAGAAGCATACACCGATCCAATTAAATTAAGAAGACAACTGAGATT
GAAAGAATCTAAAAAAAATATCGGCAAGGCTTTCTTGCCGAACAATGGAGAAAAATTGCC
GTGTGGATTAGGAAATCATTACGGAACTTTTTCTGGAGCCATCAATGCATTTAGTCCGGT
ACCGCGGCCACGTAAGGCTTACCAAGCTCCTGGACGTAATTTCACGACGAATCCTCCGAA
GAAAGGAACAGGTTACGGGTACATTGGTGTGACACTAGGAAAATATCAAGATCATGCAGT
GGAAGCCTATAACAGAGCTACAGAAATGAGACGAAAAGAATTGCTTGCCCATAAAGGAAT
GTTGAAAGGAGGCGCTTTCAAACTCAATCTTCATCCTAAAACATATTTTGATATAAATCC
TTATCAATCTGATCGGCCAGTAGGTCCTACAAAGAAGAGAGACTCAAAACTTCCAGATGT
CAAACCATTTAAGCCGAGCTCCCCTCCTAAAAAGATTGGTGGAATGAAGGCTGGAACATT
CGATCCATATCCTTCACATTCAAATGATCCATATGCAGCGAAAAATAAAAAAGGACCGAC
AACTAATAAAGACGGGAAAATATTTCATCCAGCACTCGGTCCAAAATCGAGACCGACAAG
ATCTGTCGTTGAACAGAACGTCATCAAGTCTGTTCATCATGAAAATGATTTGGAAAAACT
GCAGTTTCCTCTGATTAACATCTTTTTAGCTGATTTAGGTGATTTACCTTTGTTCAAGCA
GTAGCTTTGTCACAATCAACTATTTTGATTGAAAAACTAATGCTTGGGGAATGGCAAGGT
CTTGAACAATTTACCAGTAACAGGACAAACAAATTTATTAGTGCCGCAATGTTTGTGTAC
TGCAATGCCATTTGGGTATAGTGTACAATCAGTATCTTGGAACAGTCTGTTACACACCTG
ACAAATTTTATCCTCATTAATGGAAACACATTTATTCAAAACTTGAATATGTTCTTTTTT
TACGTTATTATTCTCGCACCTTTCAAGCTTGTGTTGGAGCTGGTCGGTACAGACACCATG
CCTCTGTATTCTAAGAGTACGACTAAGAAATCTTGTAAGAAGAGTGACAGACCATGTTTT
CGGAAGTACGTTCAGAACTTCCTGTGCGTTGTAGTTTTCTGCATATTTGTTTAATAAATC
GACGACTGCCATCGCAGACCTGGATGACTTAGAAGAGCTTATGCTGACCTTGCTTAGATA
AACTGATAGAAGGCTTCTGAACAGTTGCTTTCTACTATCCATATCAGTGCTTTGGGTCAA
ACAGTATTCCTCTGCAGCCATTTGATCCCTCATTTTGTTGACAAGAATGTCCAGGGATTT
TTCATGCTCTCCCAGTTTTCCAAGCAGAATGACGCATTCTTCATGGAGATCAGTGTCTTT
TACTTTGCTGAGTATAAGAGATACTCTATAGAGACTTGACTTCTTTAAAAGAGCCTGCAG
CTTCTCCCTGGCTTGAGCAAATTCTTCTTCATTTTTATCACTTTCGGCAAGGAGATTCAG
AACTGAGTCAAGATAAAGAACTGCCAAATGAGTGTGGAACTTTTCTTTTTGTACCCTGCA
AGTATAAACTAAGTATTCAAGGTAGGTAGTCACTGATTGCGGATGATGATGAAGAAAAGC
TATAATGTCATCCGTTTTCGGAAGATTGCCCTCTTCCTTTGACTCAGACTTGCTAGATTG
CTCTGACAAAGGCAAGTGTTTGGTAAAAATCGATACCCCAACATGTTGATCAAGTTCCAA
GATCCAAGCAACGTGTTTCCAAAGCAATGAAACATCATTATAGTATTTTCCAAGCTGCTC
TGCAATGAAAGAAAGTCCTGGAAAGTCCAAATCTTTCTTTATTCCAACAGCTAATGCTTT
CCACTGTTGCATCGCATCATCGACACGGTCGCCTAGCAAAGTAAACATCGCTCGAGCGTG
AAAGCATCCGTGTTCATCTAAGATTGCCGAGACGACATCAAATTTCTTGGAAAATTCGAA
GAAAAGTGGACTTCTTGCGGGTATAGTTTTGGAAATAGGTTCGTGCTCTCCTTGAAATAA
AAAAAGAATCTCCTTTGTAGAATGCAGCTTGGAAAATATCTTTAGACTGGCATGAAAGAA
ATCATATCTGTACTCGGGATTGTTTTCAAGCTTTTCCTTAGCAAAAGGATTCGTTGAGCT
ATCAGAATGATCTGATTTAATTGGCAGAGGGTGCAATTGAAGATAGGACGCTAGGAACTC
TTCACATTCTTGTATTTTCACATTGTCGTGATGGCACATATCGTGAATGTTGGTTATACT
GTGAAGATCTGATGAATTTCTCACGGTAGAGCTATCAGGCAGTAATCCAGGATAAAGCAC
GATGATTTCCCTGGCATCGATACGACCCAAAGTAAACATTGCCTCCGCAGCATCAAAAAA
GAGGTTTCTAAAATGCACGAAACCCGCTCTTTTGTAAATTCTTGACATCATACCTTGATA
TTTGTCCCTCGACATACATTTTCTAAATGCCTTTGCCAGTTCCATCGCCTCGTCTACTTT
CGATTGATTCAAAAGGGTTGTGATTTGGGTTTCGTAAGGTATCAGAACCAAAATGAATAT
ATCTTTGCCTGTACAGACAAGTAACTTATCAGGAACACTTTCAAAAAGAACAATACCTCC
CTGAAAAGGTAAAGTCTGTTTCTGCTGTTGATCAAGCACACTGTGTATAGTAATAAACTC
ATCATTCATGGCAACAACATATGGGTAGATGTAAGAAGCTTGGAATGTACCCTCCGACCA
CTGAATGGGAGGTCGCTGGGAGATACCAGCTGAGGTCACAAACACTCCCAAATTATTCGG
GGCAGCAAGAAGGAATTCAGATGGAGCAACTCTATGCACCAAGAGTTTAGTGTCTACGAC
AGGAAAGAGATCTTGTCTAGTGTTCGAATCCATGTCGACCATTAAATACCCGGACAAAGT
ACCTACACACATGTGACGGCCGTCTAATGCGAGGGATCTAGGGTGTTCTGGCAATGATAC
TTCTTTGAGTGGCACGATACTGTCTTCTTGAACCTGGTACAGTTGGACACTTCTCTTTTT
AGAATACGATACGCATATTTCAACTGCGAAAGGATTTGCATGAATTGGATAGCTGTTGAC
GTAAAACCTGCTAACGTTTTTTAGTTTCCCAAATATTTCAAAAGACGGAGACAAATCCAT
CATGCTGTATGCATAAATGCAGCCGTCAGAATTAATCAATAGACATTTGAGCTCAGGGGC
TGTTTCTATCTGAACGACAGGCTTCTTTGTTGAAACACGAGTCTTGTTCTGAAGAGCTAT
TTTTAGGTCACTACCATCACTTGGACTCGGACGACCAGGATTTACCGGAATTTCATTGAG
AACAAAATGGCAAATTGTTCCATCAGTCGTACCTACAAACAAATTTTTGCCGCTTGTCGC
CATGGACTCGATCATAATCCGTGGTTTGTTCCCCATGATGCTCTCTCTCCCCACTAGAAA
CTTCAGCTCAAATACCTTTGACATTGTAAGTGAAAGGGCGTGCTAGGATGTGAACCAGAC
ACGGATAATGGACTAAAAGTGTAAAATTAGACCTGGGGTACGTGAGCCGCCGG
| PANTHER |
Vam6/VPS39/TRAP1 (IPR032914) - T[13-896] 3.0E-162 |
| ProSiteProfiles |
CNH_dom (IPR001180) - T[22-300] 22.388 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[28-202] 2.64E-6 |
| Pfam |
CNH_dom (IPR001180) - T[70-286] 5.0E-19 |
| ProSiteProfiles |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[612-774] 21.434 |
| Pfam |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[633-753] 2.4E-7 |
| Pfam |
VPS39/TGF_beta_rcpt-assoc_2 (IPR019453) - T[788-894] 4.9E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS39_HUMAN | 27.616 % | 106 | 2.0E-23 |
| TGFA1_HUMAN | 35.73 % | 544 | 0 |