- Clone 'ciad065j11' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S130.g05868.01.t
Possible name(s)
NR1I2; NR1I3; VDR
Gene model
Location
S130 [63,260 / 71,564]
Amino acid sequence
Length: 557
>Harore.CG.MTP2014.S130.g05868.01.p
MKTVGRTGVSLSRLRQDSPEDEGKTKDKICVVCGDIATGTHFAAMTCEGCKGFFRRSMKK
CTQFTCAFENHCTINKSNRKHCQACRLQKCLAVGMNSNLIMSEESVNRKRELIRTNREKR
ALMRLKKEQEEIDQREKIFELSPQPIVQMTPEDKCLIKMLLDCHYSSYDFSYEDYETFRG
RQHIAPPNVEEIKTSHVTLAWLMANTEEDLSRPQEEKPRKSASKVRSSSKKDNKVEHPKR
AKGTILIHYNSPVECCDLSDTFSSLHGVSQPPVVQQDGAVGRQSVAQDSFYSDSSASMPS
RHNIRLGDQELNQYKCDMADQAATRMMFEDSKDTLTDSGVDSLLYLQGLFMNQGLMDEKM
HSLFQHFCDIMTWGIKKVIEFCKCIPEFQELSTVDQINLLRGGCLEMLVLRSYFAFASDG
NKYMSDKFQYSPEDFLQAGASTEFVDQYTNVHMRMRKMKLKVEEICLLIGLVLFSPDRPG
VQDHGKVEAMQKRIAQALRAYEYTNKDPEKACVIYSELLLLLPVLRTINVLFSNTILTLK
DDINEDDINPLILEVNN
Nucleotide sequence
Length: 2,333
>Harore.CG.MTP2014.S130.g05868.01.t
GCAAACTTTTATCTACATTTTAACCATTATTTCGCTTCATTATCCAATTGATTTTCCTCT
CTATCTGACTCGTGATTTCATTCAATAGATCTGGCTTGCTGGCGGTATGTTGTTAATATT
TTATCAGTGCACTGACTCAGGTTTCTGTCTCTTCATGCAGGATGTTGAAAATACTTCAGC
CATAAAGAATTCGAAAATTTCTTACGCTTAGCATGAACTTTAGTGTATGAATATGGCAGA
ATTTTTATCTGATCAAAAGAGTTCTTTGGACTTGGATGCGTTGAACAGCGGACGCCTCAG
TAGTGGGTCAAGTTCACCCAAGTCTTCGAAGTCCACTGGATCGGATGAAAACCGTAGGTC
GAACGGGTGTATCGCTGAGCAGGTTGAGGCAAGATTCCCCTGAGGATGAAGGCAAAACAA
AGGATAAAATATGCGTGGTATGCGGGGACATCGCTACTGGAACGCATTTCGCTGCCATGA
CATGCGAAGGGTGTAAAGGATTTTTCCGGAGGTCTATGAAAAAATGCACCCAGTTTACCT
GCGCTTTCGAGAACCATTGCACCATAAATAAGTCGAACAGGAAACACTGCCAAGCGTGCC
GACTGCAGAAATGTCTCGCCGTTGGTATGAATTCCAACCTGATAATGAGCGAAGAAAGCG
TAAACAGAAAACGTGAACTCATTCGAACGAACAGGGAAAAGAGAGCTCTTATGAGGTTGA
AGAAAGAGCAAGAGGAAATTGATCAACGGGAAAAGATTTTCGAGTTGTCGCCACAGCCTA
TTGTGCAGATGACACCCGAGGACAAATGTCTGATAAAAATGCTTTTGGATTGCCACTACT
CAAGCTATGACTTCAGCTATGAAGACTACGAAACGTTCCGTGGCAGACAGCATATCGCTC
CACCAAATGTCGAAGAGATCAAGACGTCACATGTTACCCTCGCTTGGCTCATGGCGAATA
CAGAGGAAGACTTGAGTCGTCCGCAGGAGGAAAAGCCGAGGAAAAGTGCGAGCAAGGTCA
GATCGTCCAGTAAAAAAGACAATAAAGTTGAACATCCTAAGAGAGCGAAAGGTACTATTT
TGATTCATTATAATTCCCCGGTCGAATGCTGTGACTTGTCAGATACGTTCAGCTCTCTGC
ACGGGGTTTCGCAGCCTCCCGTTGTCCAGCAAGACGGTGCTGTCGGGAGACAGTCCGTCG
CCCAAGATTCATTCTATTCAGATTCATCAGCAAGCATGCCATCACGGCACAACATCAGGC
TAGGTGATCAGGAATTGAATCAGTACAAATGTGATATGGCCGATCAAGCTGCAACCAGGA
TGATGTTTGAAGATTCCAAAGATACCTTGACAGACTCTGGAGTCGATTCATTGTTGTATC
TGCAAGGATTGTTTATGAATCAAGGTCTGATGGACGAAAAGATGCATTCGTTATTTCAAC
ATTTCTGCGATATCATGACATGGGGAATCAAGAAGGTGATTGAATTTTGCAAATGTATAC
CGGAATTCCAAGAGCTATCTACAGTTGATCAAATCAATCTGCTTCGAGGAGGATGTCTTG
AGATGCTCGTCTTACGTTCCTACTTTGCTTTTGCTTCCGACGGTAACAAGTACATGTCGG
ATAAATTTCAATATTCGCCAGAGGACTTCTTGCAAGCCGGTGCAAGTACCGAGTTTGTTG
ATCAATACACAAACGTACACATGAGAATGCGCAAGATGAAGCTCAAGGTGGAAGAGATCT
GTCTTCTGATCGGTCTTGTGCTATTCTCTCCCGATCGGCCCGGCGTACAAGATCATGGGA
AGGTTGAGGCAATGCAAAAAAGAATTGCTCAGGCACTGAGAGCATATGAATATACTAACA
AGGATCCGGAGAAGGCTTGTGTCATTTATTCTGAACTACTCTTGCTGTTGCCTGTGCTGA
GAACAATCAACGTTCTATTTTCAAACACAATCCTGACATTGAAAGATGACATCAATGAAG
ATGACATCAACCCACTTATACTGGAAGTCAACAACTAATTTTTCTTGTAACTTTCTGAAA
CGATCCTGGTACTTTTTATTCTCCTTGTAAGTTCTATTACACTTTTTCAGGTCTTTCTAT
AACTTTTGTTTTATCGCAGATAAAATATCATCTGTTGTATTTTCAGTGGTCTTTTTTCTC
ATTTGGTGAAGCCATGAAGTTCTAACTATTTTTTTTCAAATATTTCTTACATATTTCATT
GTTCCAGTACCATGTATCCATGATGTTCCCATTTCTTTGTTATTACGAATGGTTCTACTC
CTGACGATTGAACATCCAATTCCATATTGTGAGTTATTGCAAATGTGAATTGG
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[20-132] 7.0E-31 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[27-102] 18.686 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[27-98] 4.6E-32 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[29-96] 8.1E-28 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[30-46] 1.4E-15 - T[46-61] 1.4E-15 - T[79-87] 1.4E-15 - T[87-95] 1.4E-15 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[30-56] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[91-101] 1.4E-16 - T[370-391] 1.4E-16 - T[391-407] 1.4E-16 - T[458-473] 1.4E-16 - T[517-534] 1.4E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[351-555] 1.44E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[362-532] 4.7E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[369-529] 2.3E-37 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VDR_HUMAN | 43.258 % | 147 | 6.75E-39 |
| NR1I3_HUMAN | 39.521 % | 121 | 2.14E-30 |
| NR1I2_HUMAN | 40 % | 123 | 1.56E-30 |