- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S132.g01719.01.t
Possible name(s)
NKX2-1; NKX2-2; NKX2-4
Gene model
Location
S132 [71,871 / 79,961]
Amino acid sequence
Length: 557
>Harore.CG.MTP2014.S132.g01719.01.p
MSLSPKQHQSSSTTTPFSVTDILSPLEDHYAGSEVNRGNTNGEVNSNHNHCINISNSNIL
YNNQQLLSLEQQGHSSLSVRHYESCPTSATGPVHLSAMDPGSLVAVSAALNVPSIGDQSV
MGSMSPTGGSVSSIPLYRHPMSIGTSQHGVHHQQMQATMPYQSMNSSAAMGMNGGYNLHT
IPPSQSSFHSMSGAGSGSTGYCNGGMADLASYNNVQSSPGWYSTPTNPDPRFGTMPMSRY
LTPSPGMGMNTYGGMNMMTGTGMDGMHKPMLPSSQRRKRRVLFSQAQVFELERRFKQQKY
LSAPEREHLAQMIRLTPTQVKIWFQNHRYKNKRALKENGSDVQTPSQTTSNENSTQNQGP
SQHQQQTNSLMQGQQTYSPNNQVNINCQQNEGGNQQHHMVESVADHQHDQGTQSPRRISV
PVLVKDGKPCSAGSAGTPNGSIMTDGMDGVSQASAQESLNAETAIMNVYGNGHLKIDGCG
NGNDNSLCVAGATLVAPSPQGHYIGTSQHQDLISVNVSTLSTENMPPMAYHPLQSQHHHL
PGASSVVNNSLLYGIYR
Nucleotide sequence
Length: 1,674
>Harore.CG.MTP2014.S132.g01719.01.t
ATGTCCCTGAGCCCGAAACAGCATCAATCTTCCTCCACTACAACTCCCTTCTCCGTGACT
GACATTTTGAGTCCGTTGGAGGATCACTACGCTGGTAGCGAGGTCAATCGAGGTAACACT
AACGGCGAAGTTAACAGCAACCACAATCACTGCATCAACATATCAAACAGCAATATCCTT
TACAACAATCAACAGTTACTGTCTTTGGAACAACAGGGCCATTCGTCCTTGAGCGTGAGA
CACTACGAGTCTTGTCCTACCAGTGCGACGGGGCCGGTTCACCTCTCTGCTATGGACCCG
GGGTCACTCGTCGCTGTTTCTGCCGCGCTCAACGTGCCTTCGATCGGCGATCAGTCAGTT
ATGGGTTCGATGTCTCCGACAGGAGGTAGTGTCAGTAGTATTCCTTTGTACAGACATCCA
ATGTCCATAGGTACGTCACAGCACGGCGTTCATCATCAGCAAATGCAAGCGACAATGCCT
TATCAAAGCATGAACTCTTCAGCGGCAATGGGAATGAACGGTGGGTACAATCTGCACACG
ATTCCGCCATCACAAAGCTCTTTTCACTCCATGTCCGGAGCCGGTTCAGGCTCAACCGGA
TATTGTAACGGAGGCATGGCTGACTTAGCATCCTATAACAACGTCCAATCATCGCCAGGA
TGGTACAGCACACCTACTAATCCTGATCCACGATTCGGAACAATGCCAATGTCCAGATAT
CTCACTCCGTCGCCAGGGATGGGCATGAACACGTACGGTGGAATGAATATGATGACCGGT
ACTGGCATGGACGGCATGCACAAACCAATGTTGCCCTCCTCCCAGCGAAGGAAACGCCGA
GTTTTATTCTCTCAAGCCCAGGTTTTCGAGTTGGAACGTAGATTCAAACAGCAGAAGTAC
TTGTCCGCGCCGGAGAGGGAACACTTAGCTCAGATGATACGACTGACACCAACGCAAGTT
AAAATATGGTTTCAAAACCACAGGTATAAGAACAAAAGGGCACTGAAAGAAAACGGGAGC
GATGTACAAACTCCAAGTCAGACTACGAGCAACGAAAATTCGACGCAAAACCAAGGACCA
AGCCAGCATCAACAACAGACCAATTCACTAATGCAAGGACAGCAAACCTATTCACCGAAC
AATCAAGTCAACATTAATTGTCAACAGAATGAGGGAGGAAATCAGCAGCATCACATGGTT
GAATCTGTCGCAGACCACCAGCACGACCAGGGTACCCAGTCACCCAGACGTATCAGTGTG
CCGGTTTTAGTGAAGGATGGGAAACCATGTAGCGCCGGAAGCGCGGGAACTCCCAACGGG
TCCATCATGACCGATGGAATGGATGGGGTGTCTCAGGCATCCGCTCAAGAAAGTCTTAAT
GCCGAAACTGCAATAATGAACGTTTATGGAAACGGGCATCTCAAGATCGATGGATGTGGG
AACGGCAATGACAATTCGCTCTGCGTTGCTGGTGCAACCCTAGTAGCACCAAGTCCACAG
GGACATTACATTGGAACGTCCCAGCATCAAGACCTTATTAGTGTTAACGTGTCCACCTTG
AGCACAGAAAATATGCCTCCGATGGCGTACCATCCTCTACAGAGTCAACATCATCATCTG
CCTGGTGCTAGTTCTGTAGTAAACAACTCACTATTGTACGGGATTTATCGATGA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[255-333] 3.55E-23 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[274-334] 19.921 |
| SMART |
Homeobox_dom (IPR001356) - T[276-338] 3.0E-22 |
| Pfam |
Homeobox_dom (IPR001356) - T[277-333] 1.3E-18 |
| CDD |
Homeobox_dom (IPR001356) - T[277-333] 1.4987E-22 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[309-332] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NKX22_HUMAN | 77.941 % | 123 | 1.03E-31 |
| NKX24_HUMAN | 50.581 % | 152 | 2.14E-41 |
| NKX21_HUMAN | 58.108 % | 155 | 1.68E-42 |