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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S1335.g09271.01.t

Possible name(s)

ACTA1; ACTA2; ACTC1

Gene model

Harore.CG.MTP2014.S1335.g09271

Location

S1335 [1,916 / 3,684]

Sequences

Amino acid sequence

Length: 156

>Harore.CG.MTP2014.S1335.g09271.01.p
MSDGEEDTTAIVCDNGSGLVKSGFAGDDAPRAVFPSIVGRPRHQGVMVGMESAGIHETTY
NSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV
WIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF

Nucleotide sequence

Length: 471

>Harore.CG.MTP2014.S1335.g09271.01.t
ATGTCTGATGGTGAAGAAGATACAACCGCAATCGTCTGCGACAATGGATCAGGATTGGTC
AAGTCTGGCTTTGCTGGTGATGACGCTCCACGAGCAGTTTTTCCATCAATCGTTGGTCGT
CCAAGACATCAAGGTGTCATGGTCGGTATGGAATCAGCTGGTATTCACGAAACCACGTAC
AATTCCATCATGAAATGCGATATTGACATCCGTAAGGATCTTTACGCTAACAACGTTCTC
TCTGGTGGAACCACCATGTATCCTGGTATTGCTGATCGTATGCAAAAAGAAATCACTGCC
CTTGCTCCGAGTACAATGAAGATCAAAATCATTGCTCCTCCTGAACGTAAATATTCTGTC
TGGATTGGAGGATCTATCCTTGCTTCCCTCTCTACCTTCCAACAGATGTGGATTAGCAAA
CAAGAATACGACGAAGCCGGACCTTCCATTGTTCATAGAAAGTGTTTCTAA

InterProScan

PANTHER
Actin (IPR004000) - T[5-50] 4.0E-96 - T[48-155] 4.0E-96
Pfam
Actin (IPR004000) - T[6-47] 1.1E-11 - T[52-156] 2.9E-46
SMART
Actin (IPR004000) - T[8-156] 9.6E-9
ProSitePatterns
Actin_CS (IPR004001) - T[137-145] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ACTA_HUMAN 96.46 % 230 9.25E-76
ACTS_HUMAN 94.69 % 228 4.87E-75
ACTC_HUMAN 96.46 % 230 7.69E-76