Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S137.g13060.01.t

Possible name(s)

FAF1; FAF2; UBXN7

Gene model

Harore.CG.MTP2014.S137.g13060

Location

S137 [108,116 / 118,274]

Sequences

Amino acid sequence

Length: 629

>Harore.CG.MTP2014.S137.g13060.01.p
MATPGDENIQQSEDEDLSQELTEKLLHFQDVTGIEDLSRCKTILRQHAWDVAGAVQSTFT
ENDISNHQTNSFHNTPPPPATSSGLRHRSIAVGPPLPIRRYPLTSTYAARGPRMYPQGFF
QWTYYILALPFRFTWTALFDVFRFVWRVFVPNPLLRVTDPHGDIATFINEYEEEYGTRHP
VFFRGTYAEAQSESRRQSKYLLVYLHGPDHQDTPDFCLNVLSNEDTIELIQTNCIFWCCS
VNKPEGYRVSRALQENTYPFLAMVCQYQGKMTVVGRMEGPLSPQEVIDQVSGIIERFEPV
MIAARADRAERDMTQQLRNEQDQAYQESLLQDKEKEEKRRREEEAKKKKIEDEEEXYGKW
GTPSWEIWHKKGLTILSRALQENTYPFLAMVCQYQGKMTVVGRMEGPLSPQEVIDQVSGI
IERFEPVMIAARADPAERDMTQQLRSEQDQAYQESLLQDKEKEEKRRREEEAKKKKIEDE
EEKVRRKEEAEEEYIRRKMRCKEELAPEPDSEDSNAIKILLKLPDGSRLTRRFFTTQPVK
NIHDFVFCQDSAPRHFQIVTNFPLKIIPGCSTSDVLESEEAGGEMMEGDEVPSSRTQLLT
IEEAGIKSAEILFVQSMDNDDSEEETSER

Nucleotide sequence

Length: 1,890

>Harore.CG.MTP2014.S137.g13060.01.t
ATGGCAACCCCAGGTGATGAAAATATACAACAAAGTGAAGACGAAGATTTGTCTCAAGAA
TTGACTGAAAAATTACTGCATTTCCAAGATGTAACCGGAATCGAAGATTTGAGTAGATGC
AAAACCATTCTTCGTCAACATGCATGGGATGTTGCAGGTGCTGTACAGTCAACTTTTACT
GAGAATGATATATCCAATCACCAAACAAATTCATTCCATAATACACCTCCACCACCAGCA
ACAAGTTCGGGATTGAGACATAGAAGTATAGCTGTGGGTCCTCCATTACCAATCAGAAGA
TATCCGCTTACCAGTACGTATGCCGCTAGAGGACCTCGTATGTATCCGCAAGGTTTTTTC
CAGTGGACCTATTATATATTGGCACTGCCGTTCCGATTTACATGGACTGCATTATTTGAC
GTATTCAGGTTCGTGTGGCGTGTGTTCGTTCCAAACCCGCTGTTGAGAGTTACAGACCCA
CATGGTGATATTGCAACCTTTATTAATGAGTATGAAGAGGAGTATGGCACAAGGCATCCT
GTGTTTTTCCGAGGTACATATGCAGAGGCTCAGAGTGAATCTCGCAGGCAGTCAAAGTAT
CTACTTGTATATTTGCATGGTCCTGACCATCAAGACACGCCTGATTTTTGTTTGAACGTT
CTTTCAAATGAAGACACCATTGAATTGATACAAACGAATTGTATCTTCTGGTGCTGCTCT
GTAAATAAGCCTGAAGGTTATAGAGTATCTAGGGCTCTCCAAGAGAACACCTATCCATTC
TTGGCAATGGTCTGCCAGTACCAGGGTAAGATGACTGTCGTGGGAAGGATGGAAGGGCCG
TTATCTCCGCAGGAGGTAATAGACCAAGTGAGCGGGATTATAGAAAGATTCGAACCTGTG
ATGATCGCTGCACGAGCCGATCGTGCAGAACGAGATATGACTCAGCAGCTTCGAAATGAG
CAAGATCAAGCATATCAGGAATCCCTTCTACAGGATAAGGAAAAAGAGGAGAAGCGAAGG
CGAGAAGAAGAAGCAAAGAAAAAGAAGATTGAAGATGAGGAGGAGNAATATGGAAAATGG
GGAACTCCCTCATGGGAAATTTGGCATAAAAAAGGATTAACCATATTATCTAGGGCTCTC
CAAGAGAACACCTATCCATTCTTGGCAATGGTCTGCCAGTACCAGGGTAAGATGACTGTC
GTGGGAAGGATGGAAGGGCCGTTATCTCCGCAGGAGGTAATAGACCAAGTGAGCGGGATT
ATAGAAAGATTCGAACCTGTGATGATCGCTGCACGAGCCGATCCGGCAGAACGAGATATG
ACTCAGCAGCTTCGAAGTGAGCAAGATCAAGCATATCAGGAATCCCTTCTACAGGATAAG
GAAAAAGAGGAGAAGCGAAGGCGAGAAGAAGAAGCGAAGAAAAAGAAGATTGAAGATGAG
GAGGAGAAAGTAAGACGGAAAGAGGAAGCCGAAGAAGAATATATCAGGCGAAAAATGCGC
TGTAAAGAGGAATTGGCACCGGAACCAGATAGCGAAGATTCAAACGCAATAAAGATTCTG
TTGAAGCTTCCGGATGGTTCCAGGTTAACCAGGAGATTTTTTACAACACAGCCAGTTAAG
AACATACATGATTTCGTTTTCTGCCAAGACAGTGCTCCCCGGCATTTTCAGATTGTGACC
AATTTCCCACTCAAAATCATACCCGGGTGTTCGACCAGCGACGTGTTGGAATCTGAGGAA
GCTGGTGGTGAAATGATGGAGGGTGATGAGGTTCCATCTAGCAGAACTCAGTTGTTGACG
ATTGAAGAGGCCGGCATCAAGTCGGCCGAAATTCTATTCGTGCAATCTATGGACAATGAT
GATTCTGAAGAAGAAACATCCGAGAGATGA

InterProScan

SUPERFAMILY	Thioredoxin-like_sf (IPR036249) - T[158-305] 2.91E-27
SMART	UAS (IPR006577) - T[166-291] 2.9E-39
SUPERFAMILY	Ubiquitin-like_domsf (IPR029071) - T[475-617] 3.75E-17
Pfam	UBX_dom (IPR001012) - T[511-565] 1.2E-8
ProSiteProfiles	UBX_dom (IPR001012) - T[512-614] 15.296

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
FAF2_HUMAN	45.031 %	298	7.78E-95