- Clone 'AHC0AAA134YF09' >
- Clone 'cima878030' >
- Clone 'AHC0AAA93YK17' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S13.g04373.01.t
Possible name(s)
PCDH12; PCDH17; PCDH18
Gene model
Location
S13 [663,319 / 676,790]
Amino acid sequence
Length: 1,364
>Harore.CG.MTP2014.S13.g04373.01.p
MYVTECSLSQTEQFRIHIWAAPNALVPVASSYRHLFCRRLTNSSNDHREQDARTAIFLYQ
INHSLCAAAYAKSNPVVRYPQNMSANSLFAKHLAINNCTANMNHKILNRVMAFSCVITRL
AYIFMMLTSSANTLNTAIRLDFPEEQERGTIVADLAKNFNVRSADIGGRSFDILSQIMKS
GHKVIANDGKWVEINKETGVITVKEPVDRETECGEDSELECVIVLKTAMMPQAHFRLQNV
ELMVTDINDHNPKFPAVDSEHTFSVDIKEDAPLSVINLDKYLATDEDTGDNAKMTYLMPK
NKYFQLQQQTDSTGAPHLGLEVKTALDYESMDIINFTITAEDSGSPTHRSSSVKFSVRVL
DANDNHPIFEEEEYNLNLRENLPAGKVITSVVAHDADRGMNGQVRYFIPKAGNSVTARKL
VEVDANTGVVRLRQPLDRESHDNLRVVIGARDKTAEEEGERKAGKTYLVIHVDDMNDNVP
RIQIDIILNSENREAVYILENVDRGTYVAFAGASDADTGMNGIVSLKIDTKLMTATDDIP
NGRQVADVSNHFILNSENLIATNVIFDREQYNKYIITITACDNGNPPRCSIESVPVILLD
VNDNAPIFTPAQENSIVIPEDRQVGTYLAEITANDADHLNAPALIKKKDGTLEHSEYGEV
RYSLSYGEAVFAIESKTGKLTLVGKLDYEVKKDWKLIVTAQDMGVPPKKTNFTYRVHVTD
VNDHNPEFLLPLVNNSTIYATILNTRPFYTIKSLDRDQGENSRIWYSITCENGEKKPHRF
NLDPVTGSLRLNSSNNLKELIGKHYLTIKASDSGNPPLATETTIYIEVTDLPLSTLILTD
DSDLSTGSTGMTVIVLASLASATIILLLILACIVVKCKRENKEIRTYNCRAAEGRPALTD
RSKSSMSQVGSIDEVVVVSTPGQVTSTRDVYFSKAMNEMNRTRSMTLGNNKPLLDPNTAK
YSSLDRGNKFSTFSIANKGNTNGATNIVSSTHNDGDSGKGESDKDCDSCNGDRENQGNSE
KLYSMNINSTQTCKGYLNELGPRCTINCRDIGHSDTCWMPVVAHCDIHGDHGSFVYSDCG
SENGSETAYTNKNYSHHFIPSLNPQPARFFDSLETISETQPLRLILESDGNIKPAVYSSE
SYNVNEYPSYPGSNSFFDYQHDIDEAYQHTYATLGQYPEQSQWQEMPRSPEYETSSSKLL
NPSPRPNSVHSYHRDGSFDQTPRPPSQRSSRSDVVSPHLFSHSNPYSPMVSTSELFHARP
LSGDFSDDERKVENNGSNVMEKVKRFSQAPQRRPSLRDQVLQRRFIAQNVTDPTNENEAH
VEESLMRDVRNDWYRIDNSPTANSSVSLEETQRIISDIDKLITS
Nucleotide sequence
Length: 4,382
>Harore.CG.MTP2014.S13.g04373.01.t
ATGTACGTGACTGAGTGTAGCTTGTCACAGACTGAACAGTTCAGAATTCATATTTGGGCA
GCTCCGAATGCACTAGTACCCGTGGCATCTTCGTATCGACATCTTTTCTGCAGAAGATTG
ACTAATTCCTCGAATGATCACAGAGAACAAGATGCTCGTACAGCGATCTTTTTGTATCAA
ATCAATCATAGCCTTTGTGCCGCCGCTTATGCCAAATCTAACCCTGTTGTGCGATACCCA
CAAAACATGTCGGCAAACTCGTTATTTGCAAAGCATCTAGCAATTAATAATTGCACTGCT
AATATGAATCATAAAATACTGAATAGAGTCATGGCGTTTTCCTGCGTCATCACTCGGCTG
GCGTACATCTTCATGATGCTGACATCATCCGCTAACACGTTGAATACTGCAATAAGATTA
GACTTTCCAGAAGAACAAGAAAGAGGGACGATCGTTGCTGATCTTGCGAAAAATTTCAAT
GTTCGATCAGCGGATATTGGAGGGAGGTCATTTGACATTCTAAGTCAAATAATGAAGTCC
GGTCACAAAGTTATCGCCAACGATGGGAAGTGGGTTGAGATCAATAAAGAAACTGGTGTG
ATCACAGTAAAAGAACCTGTTGATCGTGAGACAGAATGTGGCGAAGATTCGGAATTGGAA
TGCGTTATTGTTCTGAAGACGGCTATGATGCCACAAGCTCACTTTCGATTGCAAAATGTT
GAGTTAATGGTCACTGACATCAACGACCACAATCCAAAGTTTCCTGCTGTTGACAGCGAG
CACACCTTTTCAGTCGACATTAAGGAAGACGCTCCTCTTAGCGTCATTAATCTCGATAAA
TATTTGGCAACAGATGAAGATACAGGCGACAATGCAAAAATGACGTATTTGATGCCAAAA
AATAAATACTTTCAATTGCAACAACAAACCGACTCCACTGGAGCTCCACATTTAGGACTG
GAAGTGAAGACAGCTCTAGATTACGAAAGCATGGATATAATTAATTTTACAATAACCGCC
GAGGATTCAGGGAGCCCGACACATCGTTCCAGTTCTGTTAAATTCAGCGTTCGCGTGCTG
GACGCTAATGATAATCATCCTATATTCGAAGAGGAGGAATACAACTTGAACCTTCGCGAA
AATCTCCCTGCTGGGAAGGTTATCACTTCAGTTGTGGCCCACGATGCTGACAGAGGAATG
AACGGACAAGTTCGGTACTTCATACCAAAAGCAGGGAACTCTGTGACGGCAAGAAAATTA
GTCGAAGTCGACGCTAACACGGGTGTTGTTAGATTGCGTCAACCGCTTGATCGCGAATCA
CATGATAACCTTCGAGTTGTCATTGGTGCTAGAGACAAGACAGCTGAAGAGGAGGGTGAG
AGAAAAGCGGGTAAAACCTACTTGGTCATACACGTCGATGATATGAATGACAACGTGCCA
CGTATACAGATTGATATTATTCTAAACAGCGAGAACAGAGAAGCAGTATACATACTAGAA
AACGTGGATAGAGGAACGTACGTGGCATTTGCAGGCGCATCTGATGCCGACACTGGAATG
AATGGCATAGTCTCTCTGAAAATTGATACGAAACTGATGACAGCTACTGACGATATCCCG
AATGGTAGGCAAGTCGCGGATGTCAGCAATCACTTTATCCTGAATTCTGAAAATCTCATC
GCAACCAACGTAATTTTCGATAGAGAACAATATAACAAGTACATCATAACAATAACAGCA
TGTGACAACGGAAACCCCCCAAGATGCTCGATCGAATCAGTTCCTGTTATTTTACTGGAT
GTGAACGACAACGCTCCCATTTTTACACCAGCTCAAGAGAACTCGATAGTTATCCCTGAA
GATCGTCAAGTCGGTACCTATCTTGCAGAGATTACGGCAAATGATGCTGATCACTTGAAT
GCTCCAGCTTTAATCAAGAAAAAGGATGGTACACTTGAGCACTCGGAATACGGGGAAGTT
CGGTATTCTCTGAGCTATGGCGAAGCAGTGTTTGCTATTGAGTCAAAAACTGGAAAACTT
ACTTTGGTGGGGAAGTTGGATTACGAAGTTAAGAAGGACTGGAAGCTAATTGTAACTGCA
CAAGATATGGGAGTACCGCCAAAGAAGACAAATTTCACCTACCGCGTTCACGTTACTGAT
GTCAATGACCACAACCCTGAATTTTTGCTACCACTGGTTAACAATTCCACTATATATGCG
ACAATTTTGAATACTCGCCCTTTCTATACGATTAAGTCTCTTGACAGAGATCAAGGTGAA
AATTCTAGAATTTGGTATTCTATCACTTGTGAGAACGGTGAGAAAAAACCTCATAGATTT
AATCTTGACCCCGTTACTGGAAGCCTTCGACTCAACTCTAGCAACAATCTAAAAGAATTA
ATAGGGAAGCATTACCTCACAATCAAAGCCAGCGATAGCGGGAATCCTCCTCTTGCAACC
GAAACAACTATATACATTGAAGTAACAGATCTTCCCCTATCTACTTTAATTCTAACGGAT
GACAGTGACCTTTCTACAGGCTCTACTGGAATGACAGTGATTGTTCTTGCCTCGTTGGCA
TCAGCTACTATAATATTACTCCTTATATTGGCCTGCATTGTTGTGAAATGCAAGAGAGAA
AATAAGGAAATTCGTACGTATAATTGCCGAGCTGCAGAAGGCAGACCAGCACTGACTGAC
CGAAGCAAAAGTAGTATGTCACAAGTGGGCAGTATTGACGAGGTTGTGGTCGTCTCTACT
CCTGGCCAAGTGACTTCGACTCGTGACGTGTATTTCAGCAAAGCCATGAACGAAATGAAT
CGAACGAGATCGATGACACTGGGTAATAATAAACCACTATTGGATCCAAACACAGCAAAA
TACTCTTCTCTTGACCGTGGAAACAAATTCAGTACATTCTCAATCGCCAATAAGGGCAAC
ACAAACGGAGCTACAAATATCGTTTCATCAACCCACAACGATGGTGATAGTGGAAAGGGA
GAAAGCGATAAAGACTGTGACAGCTGCAATGGTGACAGAGAAAACCAAGGAAACAGCGAA
AAACTATACTCCATGAATATCAATTCAACACAAACGTGCAAAGGTTATCTGAATGAGCTT
GGACCAAGGTGTACTATAAATTGCAGAGACATTGGTCACAGCGACACTTGTTGGATGCCA
GTAGTAGCGCATTGTGATATTCACGGAGATCACGGTAGTTTTGTCTACAGCGACTGTGGC
AGTGAAAACGGGAGCGAAACGGCCTATACCAACAAAAATTATTCTCACCATTTCATTCCA
TCGTTAAATCCCCAACCCGCGCGATTTTTCGATAGTCTTGAAACCATCAGTGAAACACAA
CCCTTGCGACTAATTCTTGAAAGCGATGGAAACATAAAGCCAGCTGTGTATTCTTCCGAA
TCTTACAATGTAAATGAATATCCATCTTATCCAGGATCAAATTCTTTCTTTGACTATCAG
CATGATATCGACGAAGCATATCAGCACACATACGCAACTTTAGGCCAATATCCTGAACAG
TCTCAATGGCAGGAAATGCCAAGATCTCCCGAATACGAGACCTCTTCGTCGAAGCTATTA
AATCCATCGCCTCGCCCAAACTCCGTGCACAGCTACCACAGAGATGGCTCCTTCGATCAA
ACACCTAGGCCACCAAGTCAAAGGTCAAGTCGATCCGATGTGGTATCACCCCATTTATTC
TCCCACAGTAATCCATATTCACCCATGGTATCGACTTCGGAATTATTCCACGCTCGTCCA
TTGTCAGGTGACTTTTCGGATGACGAGCGAAAGGTGGAAAATAACGGTAGCAATGTTATG
GAAAAAGTCAAACGGTTTTCTCAAGCTCCACAGCGTCGACCTTCTTTGCGTGACCAAGTT
TTGCAAAGACGTTTCATTGCACAGAATGTTACCGACCCCACAAACGAAAACGAAGCACAT
GTGGAAGAATCATTAATGCGCGACGTTAGGAACGACTGGTACAGAATAGATAACTCTCCA
ACAGCAAATAGTTCAGTTTCCTTGGAGGAGACTCAGAGAATCATATCTGATATTGATAAA
CTGATTACTTCATAACTCCTATTGGAAAAGTTAATTAGTTAATGCAGAAAACATGTGTAG
GTTGTTTCCGATCAGTAATGGCGAATGCCTAATAGGAGACATGCGGGAAATCACATTCTT
TCACTGATTCACTGATTGAAGTGATTAGTATCAGATATTCTCCACTGTATGAGAGGAGGA
AATATGTATAATACGTTCATGCCTATTCAAAGCTTTATATATTAAGATCATTTTCTATTT
CTATTTCTTTTCTTTTCTCATTAATAAACATGGGAAGCCACTCTTACACTTAAACAGAGT
TT
| Pfam |
Cadherin_N (IPR013164) - T[138-226] 6.1E-9 |
| SMART |
Cadherin (IPR002126) - T[159-252] 8.0E-5 - T[281-367] 1.5E-16 - T[391-480] 1.6E-18 - T[511-606] 2.3E-14 - T[645-726] 1.8E-18 - T[751-832] 7.8E-9 |
| PRINTS |
Cadherin (IPR002126) - T[190-209] 1.1E-27 - T[369-398] 1.1E-27 - T[573-585] 1.1E-27 - T[587-606] 1.1E-27 - T[676-702] 1.1E-27 - T[710-727] 1.1E-27 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[261-369] 4.45E-12 - T[357-486] 1.36E-24 - T[475-601] 1.4E-13 - T[596-732] 3.81E-20 - T[716-831] 2.09E-16 |
| Pfam |
Cadherin (IPR002126) - T[264-359] 3.8E-8 - T[374-472] 7.7E-14 - T[615-719] 2.1E-11 - T[747-829] 1.8E-9 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[357-367] . - T[596-606] . - T[716-726] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 25.842 % | 268 | 6.83E-74 |
| PCD17_HUMAN | 27.645 % | 268 | 1.6E-73 |
| PCD12_HUMAN | 28.446 % | 266 | 7.46E-73 |