- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S13.g05520.01.t
Possible name(s)
TRIM54; TRIM55; TRIM63
Gene model
Location
S13 [546,648 / 548,331]
Amino acid sequence
Length: 336
>Harore.CG.MTP2014.S13.g05520.01.p
MPSGNKNGTQIDGAVSDFCGEGTSRIAYLSPAERFTEILLLTDRSESLEEYIWMTLYLQP
TQPQLPSIPNELLCPQCLELYDNPVFLPCSHTFCKSCTLLIMESAGKVLQQRRRFICPTC
RNIIKYGTEGIEGLPKNVNLEQAVKRYKLESKARYPECTRHRQFNMEMLMWCETCGCNLC
PLCALEDGHKDHKISPLKVLQKFKEVRRKLRHTTKVLSSKIETIGGNILQSESVVSSIEM
KGDDLKKRVDDECDEMLKQIEKRRQTMYKDIERAMHKKQWKRQQEIKELRAEYNKTKALL
NKISNVLENDGPSDFMKELESSGLANKVDQLAKIST
Nucleotide sequence
Length: 1,011
>Harore.CG.MTP2014.S13.g05520.01.t
ATGCCTTCAGGCAATAAAAACGGCACGCAAATCGATGGAGCAGTTAGTGATTTTTGCGGT
GAAGGAACTTCTAGAATTGCTTATTTATCACCTGCCGAAAGATTTACTGAAATTCTCCTT
TTAACTGACCGGTCAGAGAGCTTGGAAGAGTATATATGGATGACATTATATCTTCAGCCA
ACGCAGCCCCAGCTACCAAGTATTCCAAATGAACTGTTGTGTCCTCAGTGCTTGGAATTA
TATGATAATCCGGTTTTCTTGCCATGTTCACACACGTTTTGCAAATCATGTACCCTTCTA
ATCATGGAGAGTGCAGGAAAAGTCCTTCAGCAAAGACGCAGATTCATATGTCCAACATGT
CGAAATATTATTAAATATGGAACAGAAGGCATTGAGGGTTTACCAAAAAATGTTAATCTA
GAGCAGGCTGTCAAGAGATACAAACTAGAATCCAAAGCACGCTACCCAGAATGCACAAGA
CATCGACAATTCAATATGGAAATGTTGATGTGGTGTGAAACTTGTGGTTGCAATCTTTGT
CCGCTTTGTGCATTAGAAGATGGGCACAAAGATCATAAGATTTCTCCTTTGAAAGTATTG
CAGAAATTCAAGGAAGTGCGTCGCAAGCTTCGGCACACAACAAAGGTGCTGTCAAGCAAA
ATAGAAACGATTGGAGGAAACATACTTCAATCTGAAAGTGTTGTATCTAGTATCGAGATG
AAAGGGGACGATCTGAAAAAGAGGGTCGACGACGAATGCGATGAAATGTTGAAGCAAATA
GAGAAAAGGCGGCAAACCATGTACAAAGATATTGAAAGAGCCATGCACAAAAAGCAATGG
AAAAGGCAACAAGAAATTAAAGAATTGCGTGCTGAATACAATAAGACAAAGGCGTTACTG
AATAAAATATCAAATGTCTTGGAGAACGACGGTCCAAGTGACTTCATGAAAGAATTGGAA
AGCAGCGGACTAGCTAACAAAGTGGATCAGTTAGCAAAAATCAGTACTTGA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[64-154] 5.0E-17 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[74-118] 3.7E-9 |
| SMART |
Znf_RING (IPR001841) - T[74-120] 6.9E-7 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[74-121] 11.766 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[153-197] 10.978 |
| Pfam |
Znf_B-box (IPR000315) - T[154-197] 1.9E-6 |
| CDD |
Znf_B-box (IPR000315) - T[158-197] 9.94188E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRI54_HUMAN | 24.306 % | 93.6 | 1.41E-21 |
| TRI63_HUMAN | 23.221 % | 89.4 | 5.14E-20 |
| TRI55_HUMAN | 27.682 % | 98.6 | 8.75E-23 |