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TRANSCRIPT CARD

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  1. Clone 'cslv011o22' > 
  2. Clone 'ciad020g18' > 
  3. Clone 'ma103n21' > 
  4. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S13.g06289.01.t

Possible name(s)

LNX2; MPDZ; PATJ

Gene model

Harore.CG.MTP2014.S13.g06289

Location

S13 [353,923 / 358,807]

Sequences

Amino acid sequence

Length: 1,627

>Harore.CG.MTP2014.S13.g06289.01.p
MGSEHAAAVLRQCGTVVRLVVARGALDNDEENLVHDHNGEASSETSSVSGTSEGGGSDNA
VPSTMEYFEVELIKDAKGLGITIAGFVQDEESDRDDEESTGIYVKSVSPGSAADIDGRIL
PGDQIVAVDGRRLDGPNMSSDEAVQILKSTGTVVNLTIGRLQQGDGRESITSESSSSSLP
DIAAPSINDWDEIEKDFAATLTPSDEERIRRRWQAIMGSQYEIVVVQIKKFSKTSGLGIS
LEGTIDDSDQPHHYIRSLLPEGPVGRSGKLNPGDELLEVNGSRILGLHHVEVVTVIKELP
LDVCIVCARLSNSLLMPAMRNSIILEEFEGRLMERPPSSVSSSESEISFHEERKSSVLES
EIQDHDASAVEDDHNVPLPYSQYEKHRTESISSSSTQSESEESVQSNREVESSTIHVKDD
AAQKSDEEDVKSAWEDEVTYIDLLKGNESLGFSILDFQDPIHPDRTAILVRTLVEGGTAD
RDGRLEPGDKLMYVNNISLKNESLENVVGVLKSVRPGIVRIGVLKPKPVFRVLAEDNSMA
IKDEPIPPQRKPSSSSSSSSSESSVREDISHSSYKAAKEQAEHNIAYASSSSSSLSEPSV
ASRQHQELTGFHRNIETAQVPVSSYYQREPEDIQKPAEFIPVPQSSAYFRYEPVRQPGIV
SSSQSDMSSAGLKSPSLVTQSSSGNTSAEERKMEVRQVQVSGMTAIAITSSLTSHNSNKP
REPTMSVQQSYEQSSSTDHSGSEYSQPPRTSPVPLVPPKPVGYSAPSWQKGGDTFSPVPI
STERYEKTVEISKGSEGLGITVSPDRDGDGLIIGSIVAGGSVFKAGNPKLGDIIRRINND
SAVGLGAMQARALIKNHSLFSDDVKIIYIPKEYLTSFKKGIPPPKIIERAPSDTATNTQT
ASRSVSSIKSKFETPNPEKPSSPPVNVSERLQKYKQTKGDLHYIELEKGANGLGLSLAGN
KEKAQQSIYVVGINPDGAAGKDGRIKVGDELLDINGVALSGQNTHQIAMNVIRSNSQLGI
ILCRNNTSVTPLENVQKEKAAPQHFQYPPKPVNPKTVHSSSSSPTSSSSNLDNARVIKLV
KDFQGLGFAIAETVNGIVVQSIAKGGTADRDGRLKTGDYIVAVDSTSLEGMSYETAVRIL
KESRGTVKLTVASEPQLSGNAPNPSPSLNPLTCPIISGKEMTIEIMKGKSGLGVSIVGGS
DSLLGSILVHTVYDEGAAARDGRLWPGDLILNVNEHDLRTATHDQAIEVLRNTPSRVKLV
ILREENKDPPKVDHDIQTLDVQLEKKPDRGLGISILGRSKEGGGVYVSNIVPHGAADMEG
SIRPGDQILAFNGINMQHATQDDVAQALKHAKGLIHFKIGRCHVSGVSKSTAPFIPMALS
SKEQKSNAGASRGSSSSKEECKENERFVEIKKGPSQPLGISISGGVGSPLGNVPVFVAMV
QPNGAAEGKLDIGDNILSINGQSTENKTHDDIVRMLKGSDDSIVLLKVRKGEQDIRSLSE
YLAETANTISNMLASSMPDISAESNFYQSQDSDSSLQAQRLILITLDRGTDGLGFSVVGG
MGSMYGDLPIFVKSVFNIGAAARDGRLKKGDRIVAVNGESLDGSTHAEAVTILKNAKGKV
VLEVVPS

Nucleotide sequence

Length: 4,884

>Harore.CG.MTP2014.S13.g06289.01.t
ATGGGTTCAGAGCACGCTGCTGCAGTTCTACGACAGTGCGGGACTGTTGTTCGACTCGTT
GTTGCGAGAGGTGCGTTGGACAATGATGAAGAAAACCTGGTTCATGATCACAATGGGGAA
GCATCCTCGGAAACTTCATCCGTGTCCGGAACTTCCGAAGGAGGTGGCTCAGATAACGCT
GTTCCTTCAACCATGGAATATTTTGAGGTTGAACTGATAAAAGATGCAAAAGGTCTAGGA
ATTACAATAGCAGGTTTTGTACAAGATGAAGAAAGTGACAGAGATGATGAGGAGTCTACC
GGAATTTACGTGAAGAGTGTTTCCCCAGGATCAGCCGCTGATATTGACGGCCGAATTCTT
CCAGGAGACCAAATAGTTGCTGTAGACGGAAGACGTCTTGACGGTCCCAACATGTCAAGC
GATGAAGCAGTACAAATTTTAAAATCAACAGGAACTGTTGTTAACCTCACCATTGGTAGA
TTGCAACAAGGAGATGGAAGAGAGTCTATAACCTCCGAGTCAAGCTCCTCAAGTTTACCT
GATATTGCAGCTCCTTCAATAAACGATTGGGACGAAATAGAAAAAGATTTTGCTGCTACT
CTCACACCATCTGATGAAGAACGTATTCGAAGGAGATGGCAAGCTATCATGGGATCGCAG
TATGAAATTGTTGTTGTCCAGATAAAAAAATTTAGCAAAACGAGTGGCCTCGGAATAAGT
CTGGAAGGAACAATAGATGACAGCGATCAACCACATCACTACATTAGATCTCTTTTACCA
GAGGGTCCTGTTGGGAGAAGTGGTAAACTGAATCCCGGTGATGAGCTCCTTGAGGTGAAT
GGATCTCGAATACTAGGCCTTCACCATGTTGAAGTAGTTACCGTGATCAAAGAGTTACCA
CTCGATGTCTGCATTGTTTGCGCTCGTCTGTCCAATAGTTTATTGATGCCAGCTATGAGA
AATTCCATAATCCTGGAGGAGTTTGAAGGGAGGCTTATGGAGAGGCCTCCTTCTTCTGTT
TCCAGCAGTGAATCTGAGATTTCCTTCCATGAAGAAAGAAAAAGTTCTGTGCTTGAGTCT
GAAATACAAGATCATGATGCTTCTGCGGTAGAGGACGATCACAATGTACCCTTACCCTAC
AGTCAGTATGAAAAACACCGGACAGAAAGCATATCATCAAGTTCGACACAATCCGAGTCT
GAAGAAAGTGTTCAGTCAAATCGCGAAGTTGAATCTTCTACAATACATGTGAAAGATGAT
GCTGCTCAGAAGTCAGATGAAGAGGATGTAAAAAGTGCCTGGGAAGATGAAGTAACTTAC
ATAGATCTCTTAAAGGGAAACGAAAGCCTCGGGTTCAGTATCTTGGATTTTCAAGATCCT
ATTCATCCTGATCGCACTGCTATTCTTGTGAGAACTTTAGTGGAAGGAGGCACAGCCGAC
AGGGATGGTCGTCTTGAACCCGGCGATAAACTGATGTATGTTAACAACATATCACTGAAG
AACGAAAGTCTTGAAAATGTAGTGGGAGTATTAAAAAGTGTCCGACCTGGCATCGTGAGA
ATCGGGGTGCTAAAACCCAAGCCGGTTTTCCGGGTTCTAGCTGAAGACAATTCCATGGCT
ATTAAAGATGAACCCATTCCGCCACAGCGAAAACCATCATCATCATCATCATCATCTTCT
TCCGAAAGCAGTGTAAGAGAAGATATCAGTCACTCATCTTACAAAGCTGCAAAAGAACAA
GCTGAGCATAACATAGCATATGCATCAAGCAGTTCCTCCTCATTAAGTGAGCCTAGTGTT
GCATCGAGGCAACATCAGGAGTTGACTGGATTTCATCGAAATATTGAGACAGCACAGGTG
CCAGTATCCAGTTATTATCAGAGAGAGCCTGAAGACATTCAGAAACCAGCCGAGTTCATT
CCTGTTCCACAAAGCTCAGCGTATTTCCGATATGAACCTGTTCGTCAACCTGGCATCGTT
TCGTCCAGTCAATCTGACATGTCGTCTGCAGGACTCAAGTCTCCTAGCTTGGTTACTCAA
TCTTCCTCTGGTAATACATCAGCAGAGGAGCGCAAGATGGAAGTGAGACAAGTTCAGGTA
TCAGGCATGACTGCGATAGCAATTACAAGTAGCTTAACATCGCATAATTCTAATAAGCCT
CGTGAACCTACCATGAGTGTGCAGCAATCATATGAACAGTCATCATCTACTGACCATTCT
GGGTCAGAATATTCTCAGCCTCCTCGTACGAGTCCTGTTCCTCTCGTGCCTCCTAAACCG
GTCGGATACTCTGCTCCATCATGGCAAAAGGGTGGCGATACATTTTCTCCTGTTCCAATT
TCCACAGAAAGGTATGAAAAGACAGTTGAGATAAGCAAGGGAAGTGAAGGTCTTGGCATT
ACAGTTAGCCCTGACAGAGATGGAGACGGTTTGATAATCGGATCTATCGTAGCCGGTGGT
TCTGTTTTCAAAGCCGGTAACCCAAAGCTTGGTGATATAATACGCCGTATAAATAATGAC
TCTGCTGTTGGACTGGGTGCAATGCAAGCCCGGGCTCTCATTAAGAATCACTCTTTGTTC
AGTGATGATGTTAAAATTATTTACATTCCAAAAGAATACCTGACTTCGTTCAAGAAAGGC
ATTCCTCCACCTAAGATTATTGAGCGTGCCCCTTCGGACACTGCTACAAATACTCAAACA
GCTAGCAGAAGTGTGTCATCTATTAAATCCAAATTTGAAACTCCTAATCCTGAAAAGCCT
AGCTCACCACCTGTAAATGTTAGTGAGAGATTACAGAAGTACAAACAAACAAAAGGAGAC
CTCCACTACATTGAGCTGGAAAAAGGAGCAAATGGTCTAGGACTGAGTCTGGCTGGTAAT
AAGGAAAAGGCTCAGCAGAGCATCTATGTTGTTGGCATTAATCCAGATGGAGCAGCCGGG
AAAGATGGACGTATAAAAGTGGGAGATGAATTACTGGACATAAACGGCGTCGCATTGTCA
GGACAAAACACACACCAGATCGCGATGAATGTCATTAGATCTAATTCACAGCTCGGAATC
ATACTATGTCGTAACAATACTTCAGTAACTCCACTGGAAAATGTTCAAAAGGAAAAAGCC
GCACCTCAGCATTTTCAATATCCACCAAAACCAGTAAATCCAAAAACAGTCCACAGCTCT
AGCTCCTCGCCCACATCATCATCATCCAATCTCGATAACGCACGAGTTATCAAACTTGTT
AAAGATTTTCAGGGTTTAGGTTTTGCTATTGCAGAAACAGTTAATGGTATAGTGGTGCAG
TCCATCGCTAAAGGGGGCACTGCAGACAGAGATGGGCGTTTGAAAACTGGAGATTACATA
GTTGCTGTTGATTCCACTTCGCTTGAAGGAATGTCTTATGAAACTGCTGTGAGGATTTTA
AAAGAATCACGCGGTACTGTCAAACTCACAGTTGCTTCGGAACCGCAATTATCAGGTAAC
GCTCCAAACCCAAGTCCTTCGCTCAACCCACTCACCTGTCCTATAATCAGTGGTAAAGAG
ATGACCATTGAAATCATGAAAGGCAAATCAGGACTCGGGGTTAGTATTGTTGGTGGCTCA
GATAGCTTGTTGGGCTCTATATTGGTACACACGGTATACGATGAAGGCGCAGCAGCAAGA
GATGGTCGTCTATGGCCCGGGGATCTAATTTTGAATGTAAATGAACATGATTTGAGGACT
GCTACCCATGATCAGGCTATAGAGGTTTTACGGAACACTCCAAGTCGGGTGAAACTCGTG
ATTCTGAGAGAGGAGAACAAGGACCCACCAAAGGTTGACCATGATATTCAGACATTGGAT
GTGCAGTTGGAAAAAAAACCTGACAGAGGATTAGGAATTAGTATACTGGGCCGATCGAAG
GAAGGAGGCGGAGTATATGTCAGTAATATTGTACCGCATGGCGCAGCCGATATGGAAGGT
TCTATTAGACCTGGGGATCAAATTTTAGCCTTTAATGGAATAAATATGCAACATGCAACG
CAGGATGATGTTGCTCAAGCACTGAAACATGCCAAAGGTTTAATTCATTTTAAGATAGGA
AGATGTCATGTGAGTGGCGTTTCCAAATCAACTGCTCCATTTATTCCAATGGCATTGTCT
AGCAAAGAGCAAAAATCTAACGCCGGTGCTTCAAGAGGCAGTAGCTCTTCAAAAGAAGAA
TGTAAAGAAAATGAAAGATTCGTTGAAATCAAAAAGGGACCTTCACAACCGTTAGGCATC
AGCATATCTGGTGGCGTTGGATCTCCTCTCGGTAACGTTCCTGTATTCGTTGCCATGGTT
CAACCAAACGGGGCCGCAGAAGGCAAACTGGATATTGGCGATAATATACTCAGTATTAAT
GGTCAATCAACAGAAAACAAAACGCATGATGACATCGTACGAATGCTGAAAGGTTCAGAT
GATTCAATCGTTTTGCTGAAAGTGCGAAAGGGTGAACAAGATATAAGGTCGCTCAGCGAA
TATTTAGCTGAAACAGCAAACACTATATCAAATATGCTTGCGTCATCTATGCCAGACATA
TCAGCAGAGAGTAATTTTTATCAGTCTCAGGATTCTGACTCAAGCTTACAGGCCCAAAGA
CTTATACTCATCACTCTTGACAGAGGAACAGATGGTTTAGGCTTTAGTGTGGTGGGTGGT
ATGGGCTCGATGTACGGAGATCTTCCTATTTTTGTAAAATCTGTTTTCAACATTGGAGCT
GCAGCGAGAGACGGTCGTTTAAAGAAAGGGGACCGCATTGTCGCTGTTAACGGGGAAAGC
TTAGATGGAAGCACACATGCGGAAGCAGTCACAATACTAAAAAATGCAAAAGGCAAAGTG
GTGCTGGAGGTAGTGCCATCTTGA

InterProScan

SUPERFAMILY
PDZ_sf (IPR036034) - T[59-160] 8.68E-23 - T[220-312] 6.7E-18 - T[432-528] 1.84E-19 - T[778-872] 9.2E-13 - T[920-1031] 2.4E-18 - T[1054-1155] 1.97E-24 - T[1169-1266] 2.76E-26 - T[1276-1363] 1.71E-21 - T[1398-1494] 1.45E-23 - T[1529-1626] 2.23E-27
ProSiteProfiles
PDZ (IPR001478) - T[69-162] 20.647 - T[225-311] 16.988 - T[440-513] 16.104 - T[788-856] 12.828 - T[943-1026] 18.235 - T[1076-1155] 20.667 - T[1182-1265] 21.551 - T[1280-1363] 19.682 - T[1407-1491] 19.903 - T[1543-1627] 22.275
Pfam
PDZ (IPR001478) - T[75-158] 1.3E-14 - T[228-299] 6.4E-11 - T[443-515] 2.4E-7 - T[789-856] 7.5E-7 - T[945-1014] 2.4E-10 - T[1084-1151] 1.3E-13 - T[1183-1262] 4.3E-14 - T[1281-1359] 3.7E-14 - T[1409-1486] 1.9E-15 - T[1544-1624] 7.4E-16
SMART
PDZ (IPR001478) - T[77-162] 2.3E-21 - T[235-311] 1.1E-12 - T[448-527] 1.3E-14 - T[796-872] 4.9E-5 - T[951-1026] 4.7E-13 - T[1084-1155] 1.1E-20 - T[1190-1265] 9.6E-21 - T[1289-1363] 1.6E-18 - T[1416-1492] 6.3E-16 - T[1551-1627] 1.2E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
MPDZ_HUMAN 43.005 % 531 2.2E-158
INADL_HUMAN 41.266 % 273 4.44E-74
LNX2_HUMAN 31.535 % 187 3.99E-49