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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S13.g14600.01.t

Possible name(s)

CHID1

Gene model

Harore.CG.MTP2014.S13.g14600

Location

S13 [600,825 / 603,306]

Sequences

Amino acid sequence

Length: 335

>Harore.CG.MTP2014.S13.g14600.01.p
MRLLFYALFVLSVLIFYTNATLSKQKKSKEKKKKESPQRYNVLERGLVSEEVTATDITSN
HDKYSEREKDQRNFDTGETLAYVTPNYFAVPRVIFDGWTDEDYKSLFQNEDEIERMTNTI
INELTTNHMHGAVIEIWSQAGNTYPKEVIHVMKHMAEIFHDKNLIIILVIPPGLNKGGKL
GSTFLDTELAELAPVVDYFSLMTYDFAALSGHAGPSAPLPWIKSCITAIDPDMKYRKKIL
MGLNFYGSMFTSKGSSPIVGNQYLEFLKLYSPEVAWEKSASEHYSQFGDDVSGKGLVFFP
SLKSIDDRIKLAQEMGTGLSIWEIGQGLDYFYDLL

Nucleotide sequence

Length: 1,494

>Harore.CG.MTP2014.S13.g14600.01.t
CTTACACGACGCCGGTTTGCAATTGCATGACGTGGGCTATATTACTACAAATTCGAAAGT
ATTGCATTTCGTACTGACGAATACGCACTGCATATCACGTAATATTGGGATTACAACAAA
ATTAAGACTAAAAGATACAAGTAGACAATGAGGCTCCTATTCTACGCTTTATTCGTATTA
TCTGTATTGATATTTTACACAAATGCTACACTGTCAAAACAAAAAAAGAGTAAAGAAAAG
AAAAAAAAGGAGTCTCCTCAAAGATATAATGTACTGGAGAGGGGACTCGTATCTGAGGAA
GTTACCGCCACTGACATCACCAGCAATCATGACAAATACAGCGAGAGAGAAAAAGACCAG
CGCAATTTTGATACTGGGGAAACACTGGCTTACGTTACTCCAAATTATTTTGCAGTCCCG
CGTGTCATTTTTGATGGCTGGACTGATGAAGATTACAAGTCATTATTCCAAAATGAAGAT
GAAATAGAAAGGATGACTAACACAATCATTAATGAGCTGACAACAAATCATATGCATGGA
GCAGTTATTGAGATATGGAGTCAAGCAGGAAATACATATCCAAAAGAAGTTATTCACGTT
ATGAAGCACATGGCAGAAATTTTTCATGACAAAAATCTCATCATTATACTCGTTATTCCA
CCAGGCTTGAACAAAGGGGGAAAACTTGGAAGCACCTTCCTAGACACGGAGCTAGCCGAG
CTAGCACCCGTCGTTGATTATTTTAGTCTCATGACTTATGACTTTGCGGCACTTTCTGGC
CATGCCGGACCGTCAGCACCATTGCCGTGGATAAAATCATGCATCACAGCTATAGATCCT
GATATGAAGTACAGGAAAAAGATTTTGATGGGACTCAACTTCTATGGAAGCATGTTCACA
TCTAAGGGCTCATCACCTATTGTTGGCAACCAATACCTGGAATTTCTTAAACTGTACTCT
CCGGAAGTAGCATGGGAGAAATCTGCATCAGAGCATTATAGTCAGTTTGGAGATGATGTC
TCTGGAAAGGGACTTGTCTTCTTCCCATCATTAAAGTCAATCGATGACAGAATTAAGCTT
GCACAAGAGATGGGTACTGGGCTCTCCATATGGGAAATTGGTCAAGGACTAGATTATTTT
TATGACTTATTGTGAAATGCAATATCCTGCTGACTTAGTTCAAAGAGTCATGTGAAGTTC
AGTAGACAACACAAATCTTCACTGTTCTCCATATTTTCTTATATGTGGTGCACTTTTTCC
GAATAGAAAAAGCAATAAAAATCAAACGTGACTTGTATATACAATTATCATGCAAAGCAA
AAAGAGTTACAGGTCGAATAAAGTTATGCAACTCCATTCAAAAATACTGTAAGTTCAATA
ACATGATAAATAATGGATGAGATAGATTGTTATTTTCTCCTATGTAAAACCCAATGCAAA
TTGATTTCATTCAACGACATAACATTCAACATGTGAGGTCGCAAACTTAAGTGG

InterProScan

SUPERFAMILY
Glycoside_hydrolase_SF (IPR017853) - T[70-246] 6.68E-25 - T[300-333] 6.68E-25
SMART
Chitinase_II (IPR011583) - T[77-327] 5.6E-5
Pfam
Glyco_hydro18_cat (IPR001223) - T[95-326] 2.9E-14
Gene3D
Chitinase_insertion_sf (IPR029070) - T[247-299] 5.4E-80

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CHID1_HUMAN 34.264 % 247 2.51E-79