- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g48833.01.t
Possible name(s)
LNX2; MPDZ; PATJ
Gene model
Location
chrUn [302,958,230 / 302,964,029]
Amino acid sequence
Length: 1,932
>Boschl.CG.Botznik2013.chrUn.g48833.01.p
MPTETDFERCADILARLQDGVLQKKSLSKHSAAIQQLLNLLQNPGFRETAKLQNSMKQLK
KEVNNPGFNVSKLDFSPEVGGLTLGGKKIEVETEREYDSDSSFDDSEDDENEMNEFVEQA
AQGRETEKISLVKSENEGLGFSVVGLRSEHRGDLGIFVQDIKPAGVADRDGRLKESDQIL
VINNQPLAPNISHQQAIGILQRVSGIVELTVARGGIPQERNANGSPQLSRSSSVASSLSQ
TSGNLPDTEWGEIETIELINDGKGLGFGIVGGKATGGVVVKTIVPGGAAHGDGRLRSGDH
ILRIGDTDLRNMGSEQAAVVLRQCGSVVRLVVARNSVEDDTQVEDDNRSEHDNDYETPHS
RSSSVSVSLSEEESSVGPPITSNLEYHNVELVKDSKGLGITIAGFMQEDGTDKGGMSGIY
VKSISPGSAADADGRIHPGDVIVAVDGRRLDTPNISSEEAVEVLRKTGTVVRLTVGRPKE
DNHRDDSSADSNSLPDINAPWGEIEQDHGDVLNLSEIDQIRTEWEAIVGPEYEVVIAQIK
KFSITSGLGINLEGVIDEGNQPHHYIRSLLPEGPVARSKMLLPGDELLEVNRTRILGLRQ
VVTVIKDLPLNVCIVCARPHNAPVIPNSKRDSVILEEREGEYIERRMNAEENALSYHQEK
EDSYSSSSSDSAPEENTMKSSSHSLSMNVMAPDPDSAWEEEITFIDLEKGDESLGFSILD
FQDPINPQRTAILVRSIVPDGVAHRDGRLEPGDKVMFVNDVPLKNHTLETVVNVLKSVAP
GLVRIGVAKPKPEFKVLQEKEIQPEIKEDGKSQLFVEPLPPPPPVPQDRYPTSSSSDEED
YEEEMRRQQAVERENERRRQAQLVELKREEELRRQQAIEHEKEQQRQAQLAELKRAEELQ
RQQALEREKEMNRQAQLDEFKRTEELQKQRADREEEMKQQAQLAEFERAKELQKQQALEY
KKELQRQAQLAEFKKVEERPKPSVRSPNERNPPTTFTSRDSQSSANASHRRSSSITTQSS
EDRTMEVKQIQVSGMTAIAITSSLTSPISPAESQKSFEPPISPQKSPEPDVFPPKAAPRP
RYTAPSWQVAEDNKRMPILAELYEKKVKIGKGREGLGITVSPDRDGDGLVVGSINANGAV
HRARRPKLGDVIRRINNDSCVGLGAMQARALITNHSRFSSDVTIVYVPKNFVQAYKDGVP
PPATNSPASSESETEQPKNVNVLRSKFEEPAPNESSDMKDKYKNVNGVVHIVDLQKGSGG
LGLGLAGNKDKSLRGIYVIAVDPNGAAAKDGRIVVGDEILEINNVSVTGPNNHQRASAVI
KSAESSLRIVLLRSKAANSSRLSSGSSNSISEDRSSSKAGSRDASDRKSRRVSDGTQKPR
FSRSSSRGSASSESGPAQPKTKTIKLVKDFQGLGFAISETGDGIVVQSIAADGTADRDGR
LKRGDYIVAVDDKSLDGMSYESAVKVLKESRGTVKLTVAADPPDPDQTSSSQTDPAVCPI
VSGRETTIEISKGHSGLGLSIVGGADSLLGSVFVHAVYEEGAAARDGRIWPGDRILQVNE
HDLRSATHDDAIEVLRNTPGRVVLTVLRNENNDPQKLDSFTYDVFLDKKPDRGLGLSILG
KSSGGGVFVSDVVHGGVAANEGSITPGDQLLSVNDVDVTQATQADVATMLKTASGTVHFR
FQRSLHAPIPAARVFSESGNAYDEEISDQHSHDGERHVEIRKGPSQPLGISISGGVGSPL
GNVPVFVAMVSSSGAASGKLEKGDKILSINGESTHDRTHEDVANMLKASVSHRVVRLTVK
QGGQDMQALAEYLTTQPQEKKSTPRPKSESFVPATTSDTAYESSEAVEIVLNRGSDGLGF
SIVGGIGSVHGDLPIFVKSIFDAGAATVDGRLKRGDRIITVNGQLVDGCSHEEAVNVLKL
AKGRVVLKVIPS
Nucleotide sequence
Length: 5,799
>Boschl.CG.Botznik2013.chrUn.g48833.01.t
GATGCCTACTGAAACCGATTTCGAGAGATGCGCCGACATTCTCGCCCGTCTTCAAGATGG
CGTCCTGCAGAAGAAGTCGCTATCGAAACACTCTGCCGCGATACAGCAGCTGCTCAATCT
ACTGCAGAATCCAGGGTTTCGAGAAACGGCCAAGTTACAAAACTCGATGAAACAGCTCAA
GAAGGAAGTCAACAATCCGGGTTTTAATGTTAGCAAACTGGATTTTTCTCCCGAAGTCGG
CGGGCTGACTCTCGGCGGAAAAAAAATTGAGGTCGAAACCGAACGGGAGTATGATAGTGA
CAGCAGCTTCGATGATAGCGAAGACGATGAAAACGAAATGAACGAATTTGTGGAGCAAGC
CGCGCAAGGAAGAGAGACCGAAAAAATCAGTCTTGTCAAGTCTGAGAATGAAGGTCTTGG
ATTTAGTGTCGTCGGCCTTAGATCGGAACACAGAGGCGATCTCGGAATATTCGTGCAAGA
TATTAAACCCGCCGGAGTTGCCGACCGCGACGGAAGATTAAAAGAAAGCGACCAAATCCT
GGTGATCAACAATCAGCCTCTGGCGCCAAACATATCGCATCAGCAAGCTATTGGTATTTT
GCAGCGCGTTAGCGGAATCGTCGAACTGACAGTCGCCAGGGGTGGAATTCCGCAGGAGCG
AAACGCTAACGGCAGCCCTCAACTATCCAGGTCGTCGTCAGTAGCTAGTTCGTTGTCGCA
GACTTCCGGAAACCTTCCTGATACAGAATGGGGGGAAATAGAAACTATCGAGTTGATCAA
CGATGGAAAAGGATTGGGTTTTGGGATTGTTGGGGGGAAAGCAACCGGGGGTGTAGTTGT
GAAGACAATCGTACCGGGCGGGGCCGCACACGGCGATGGCCGGCTACGATCTGGCGATCA
CATACTCAGAATCGGAGACACAGACCTTCGCAATATGGGATCCGAACAGGCCGCCGTAGT
GCTGCGCCAATGCGGGAGTGTTGTCAGACTGGTCGTTGCTAGGAATTCGGTAGAAGATGA
CACACAGGTGGAAGATGACAATCGCAGTGAACACGACAACGATTACGAAACGCCTCATTC
GCGATCTTCGTCGGTTAGTGTGAGTTTATCCGAAGAGGAGTCTAGCGTCGGTCCGCCTAT
CACGAGCAACCTCGAGTATCACAATGTGGAGCTCGTGAAAGATTCGAAAGGGCTTGGCAT
CACGATTGCGGGATTCATGCAAGAAGACGGGACCGACAAAGGGGGTATGTCTGGAATTTA
TGTGAAGAGTATTTCGCCTGGATCCGCGGCCGATGCCGATGGCAGAATTCACCCGGGTGA
CGTCATTGTAGCTGTGGACGGACGTCGGTTGGATACGCCTAACATATCGAGCGAAGAGGC
TGTCGAAGTTTTGCGTAAAACTGGTACTGTAGTCAGGTTAACTGTCGGCCGTCCGAAAGA
AGATAACCACCGTGATGACTCCAGTGCTGACAGCAACAGTCTTCCCGATATCAACGCTCC
TTGGGGCGAAATCGAGCAGGACCACGGGGATGTCTTGAATCTGTCGGAAATCGATCAAAT
ACGGACGGAATGGGAGGCTATCGTCGGTCCTGAATATGAGGTCGTGATCGCGCAAATCAA
GAAATTCAGCATCACGAGCGGGCTCGGAATTAATCTCGAAGGCGTGATCGACGAGGGTAA
TCAGCCTCACCATTACATCAGATCACTGCTGCCGGAAGGCCCGGTGGCGCGTTCGAAAAT
GCTTCTCCCCGGTGATGAATTGTTGGAAGTCAATCGAACGAGAATACTGGGTTTGCGTCA
GGTGGTGACGGTGATCAAAGACCTCCCGTTGAACGTCTGTATTGTGTGCGCCAGGCCGCA
TAACGCGCCGGTCATTCCAAATTCGAAACGCGACTCTGTTATCTTGGAGGAACGCGAAGG
GGAGTATATCGAGAGAAGGATGAACGCAGAAGAGAACGCTTTGTCTTATCATCAAGAAAA
AGAGGATTCCTACTCGAGTAGTAGTTCGGATTCAGCGCCGGAAGAAAACACTATGAAATC
GTCTTCACATTCTTTGAGTATGAATGTTATGGCGCCTGATCCCGACAGCGCTTGGGAAGA
AGAGATAACCTTCATCGACCTCGAAAAGGGCGACGAAAGTCTCGGCTTTAGCATTCTTGA
CTTCCAAGATCCGATCAATCCGCAACGCACCGCGATACTGGTTCGCTCGATTGTACCAGA
TGGCGTCGCGCACAGAGACGGCCGGCTGGAACCTGGCGACAAGGTCATGTTCGTAAATGA
TGTCCCGCTGAAAAATCACACGTTGGAAACTGTTGTCAATGTATTAAAGAGTGTTGCACC
TGGATTGGTAAGGATTGGTGTGGCAAAACCGAAGCCGGAATTCAAAGTGTTGCAAGAGAA
GGAAATACAACCGGAAATTAAAGAAGATGGGAAGAGTCAGCTGTTTGTAGAACCCTTACC
TCCACCTCCACCAGTGCCTCAGGATAGGTACCCAACGTCTAGCTCTTCGGATGAAGAAGA
CTATGAAGAAGAGATGCGTAGACAGCAAGCTGTAGAGCGCGAAAACGAAAGAAGACGCCA
AGCGCAGCTGGTCGAATTAAAACGAGAGGAAGAATTGCGAAGGCAACAGGCTATTGAGCA
TGAAAAAGAACAACAGCGTCAAGCGCAATTGGCAGAATTGAAACGAGCGGAAGAATTGCA
AAGGCAGCAGGCTCTGGAACGCGAAAAGGAAATGAATCGTCAGGCGCAGTTGGACGAATT
CAAAAGGACGGAAGAACTGCAGAAGCAACGGGCTGATCGTGAGGAGGAAATGAAACAGCA
AGCTCAATTGGCCGAATTTGAAAGGGCGAAGGAATTGCAGAAACAACAGGCGCTCGAGTA
TAAAAAGGAACTGCAGCGTCAAGCGCAATTGGCCGAATTCAAGAAAGTTGAAGAGCGACC
GAAGCCGTCGGTACGGTCGCCGAACGAACGCAATCCACCTACGACATTCACCTCGAGAGA
CAGCCAATCTTCAGCTAACGCGTCGCACAGGCGATCGTCCAGCATCACCACGCAGTCTTC
TGAAGATCGCACGATGGAGGTAAAACAGATACAGGTGTCGGGAATGACGGCGATTGCCAT
TACGAGTAGTTTGACGTCGCCTATTAGCCCGGCGGAATCTCAGAAATCGTTCGAACCGCC
GATTTCACCACAAAAATCACCGGAGCCTGATGTTTTTCCTCCTAAAGCCGCTCCTAGACC
GCGATACACCGCTCCGTCGTGGCAGGTGGCCGAGGATAACAAGAGAATGCCAATATTGGC
CGAACTGTACGAAAAGAAGGTGAAAATAGGTAAAGGCCGCGAAGGACTTGGTATAACTGT
CAGCCCTGACCGTGACGGTGACGGGCTTGTCGTTGGATCGATAAACGCCAACGGGGCTGT
TCATAGAGCAAGGAGGCCGAAATTAGGCGATGTCATCAGGAGGATAAATAACGACTCCTG
CGTCGGTTTGGGAGCGATGCAGGCGCGAGCGCTGATCACCAATCATTCCAGGTTCAGCTC
CGACGTGACGATCGTGTACGTTCCGAAAAACTTTGTGCAGGCTTACAAAGACGGAGTTCC
GCCTCCCGCCACGAATTCGCCTGCATCGTCGGAATCTGAGACGGAACAGCCTAAAAACGT
AAACGTTTTACGATCGAAGTTTGAAGAACCGGCTCCGAACGAAAGTTCCGACATGAAAGA
TAAATACAAGAACGTCAACGGAGTGGTGCACATTGTCGACTTGCAGAAAGGATCGGGCGG
TTTGGGTTTGGGCCTCGCTGGTAACAAAGATAAATCTCTTCGGGGAATATATGTGATCGC
CGTCGATCCTAACGGTGCTGCGGCCAAAGACGGCAGGATCGTTGTCGGCGATGAAATACT
TGAGATAAACAACGTGTCGGTGACGGGACCTAATAACCACCAACGGGCTTCAGCCGTTAT
CAAAAGCGCTGAGTCCAGTCTTCGAATCGTGCTGTTGAGAAGCAAAGCCGCGAACTCGTC
GAGGCTTTCGTCAGGCTCTTCAAATTCGATATCCGAAGATCGCTCCAGTTCGAAAGCAGG
GTCTCGCGATGCATCAGATCGTAAAAGTCGCCGTGTTTCGGACGGGACGCAAAAACCCAG
GTTTTCCAGAAGCAGCAGCCGGGGCTCGGCCAGTTCCGAGTCGGGTCCCGCGCAACCGAA
AACGAAAACCATCAAGCTGGTCAAGGACTTTCAAGGTCTCGGATTCGCGATTTCGGAAAC
GGGCGACGGCATCGTGGTGCAGTCGATAGCCGCTGATGGTACCGCGGACCGGGACGGCAG
GCTGAAGCGTGGCGACTACATCGTTGCCGTGGACGACAAGTCGCTGGATGGGATGTCGTA
CGAAAGCGCGGTGAAAGTGTTGAAGGAATCTCGTGGAACGGTGAAGCTGACCGTTGCCGC
CGACCCGCCTGATCCGGATCAAACCAGCTCGAGCCAGACGGATCCTGCCGTGTGTCCGAT
CGTCAGCGGCCGTGAAACTACAATAGAGATCAGCAAAGGACATTCGGGGTTAGGACTCAG
TATAGTGGGCGGTGCGGACTCGCTTTTGGGATCGGTATTCGTCCATGCCGTGTACGAGGA
AGGTGCAGCTGCCAGGGACGGTCGAATATGGCCCGGAGACAGAATCCTGCAAGTCAATGA
GCATGATTTGAGGTCAGCGACTCACGATGACGCAATCGAAGTCTTGCGGAACACTCCCGG
CAGGGTAGTGCTTACGGTTTTGCGGAACGAAAACAACGACCCGCAGAAATTGGACTCGTT
CACCTATGATGTGTTCTTGGACAAAAAACCGGACAGGGGTCTAGGACTGAGCATACTCGG
AAAATCGTCCGGGGGCGGAGTGTTTGTCAGCGACGTAGTCCACGGTGGCGTGGCGGCTAA
CGAAGGTTCGATCACGCCAGGAGATCAACTCTTGTCTGTGAACGATGTAGACGTGACGCA
AGCCACTCAGGCTGACGTAGCAACCATGCTGAAAACGGCCTCCGGGACAGTACACTTTCG
ATTTCAAAGATCTTTACATGCGCCAATTCCGGCTGCCCGAGTGTTTTCAGAGAGCGGCAA
TGCGTATGACGAGGAAATATCAGATCAGCATTCTCATGACGGCGAACGCCACGTGGAAAT
ACGCAAGGGCCCGTCTCAACCTCTCGGTATCAGTATATCAGGAGGCGTTGGGTCGCCTCT
TGGTAATGTTCCGGTCTTTGTGGCTATGGTGTCTTCGAGCGGAGCAGCGTCTGGAAAACT
AGAGAAAGGCGACAAGATACTAAGCATCAACGGAGAGTCTACACACGACAGGACGCACGA
GGACGTGGCAAACATGCTGAAAGCGTCCGTGTCACATCGTGTGGTCAGGTTGACTGTAAA
ACAAGGCGGGCAGGACATGCAGGCTTTGGCCGAGTATCTCACGACGCAGCCTCAAGAAAA
GAAATCGACGCCCAGGCCTAAATCAGAAAGCTTCGTGCCGGCTACTACTTCCGACACTGC
TTACGAATCATCGGAAGCGGTCGAGATAGTACTGAACAGAGGCAGCGACGGGCTGGGATT
CAGCATCGTGGGAGGAATCGGGTCAGTGCATGGGGATCTGCCAATTTTTGTCAAGTCTAT
TTTCGACGCCGGTGCTGCTACCGTCGACGGCAGACTGAAAAGAGGGGATCGAATCATAAC
CGTGAATGGACAACTGGTCGACGGATGCAGTCATGAGGAGGCGGTTAACGTGTTGAAACT
CGCTAAAGGCCGTGTTGTTCTCAAAGTCATTCCGTCGTG
| SUPERFAMILY |
PDZ_sf (IPR036034) - T[106-215] 5.26E-22 - T[228-336] 1.28E-24 - T[368-480] 3.29E-23 - T[525-624] 2.5E-13 - T[680-795] 7.19E-22 - T[1097-1192] 2.5E-11 - T[1247-1334] 2.5E-21 - T[1396-1486] 6.44E-24 - T[1483-1592] 1.04E-27 - T[1598-1688] 5.65E-20 - T[1706-1806] 1.45E-21 - T[1822-1931] 2.23E-27 |
| ProSiteProfiles |
PDZ (IPR001478) - T[128-215] 20.345 - T[255-336] 20.425 - T[388-479] 22.315 - T[533-620] 12.245 - T[704-777] 16.426 - T[1106-1174] 10.617 - T[1251-1335] 20.023 - T[1403-1482] 19.963 - T[1507-1590] 21.953 - T[1603-1685] 18.616 - T[1717-1801] 17.39 - T[1848-1932] 20.868 |
| Pfam |
PDZ (IPR001478) - T[129-211] 1.2E-12 - T[261-332] 6.8E-15 - T[394-475] 1.9E-15 - T[544-599] 1.5E-6 - T[705-778] 9.4E-12 - T[1107-1176] 2.6E-6 - T[1253-1331] 2.7E-13 - T[1410-1478] 1.7E-13 - T[1508-1586] 5.1E-15 - T[1607-1679] 7.3E-14 - T[1719-1799] 7.0E-14 - T[1849-1929] 1.3E-14 |
| SMART |
PDZ (IPR001478) - T[137-215] 1.0E-18 - T[263-336] 8.4E-20 - T[396-479] 2.2E-22 - T[546-620] 3.6E-7 - T[712-791] 5.3E-16 - T[1114-1190] 1.5E-5 - T[1259-1335] 1.9E-17 - T[1411-1482] 4.8E-20 - T[1515-1590] 6.4E-23 - T[1612-1685] 9.2E-18 - T[1726-1803] 5.9E-14 - T[1856-1932] 9.0E-16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MPDZ_HUMAN | 39.739 % | 522 | 3.4E-153 |
| INADL_HUMAN | 36.591 % | 425 | 8.84E-122 |
| LNX2_HUMAN | 31.902 % | 196 | 3.55E-52 |