- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S147.g07099.01.t
Possible name(s)
TRIM24; TRIM3; TRIM45
Gene model
Location
S147 [141,640 / 149,186]
Amino acid sequence
Length: 876
>Harore.CG.MTP2014.S147.g07099.01.p
MSTKKSEMKRGENRKGGSHKRGAMRHSSPVLDSEGIKEKITESKSSQLRSEQERNVKLNA
NRSSNSSDVSMPGQNLHTDSGISSSDSLAGYDKKLSADDREAMSDLVQLDKDLAKLGIQG
NLCSNITEDFFKDTTKALFNPDKFPAVENITLPMKETDLSGDNTPDTSANSIFMTAVGSN
VHTPDSDHALQWTDESTDCSSGPKQYNGGDFNAIDSKLYCFLCGELFTSPRLLPCLHTFC
SDCLQGRIQVDDALSSSLNTTASSSSDSSCVGRQSLTCPICSAEVKLSLGIHSLAVNHFV
QRLIMLQNMKIGHTVNLSCDLCPDNSQIAGRCVQCSVNLCLFCSEAHKRQRHTSSHTILP
PESNDTKHGKKKPYAVPMICQRHSGEELKLYCADCTELVCRDCCLSSKHKDHKCEFLTSV
INHKVSEIRSEFQICDPKIEKLRQSIAMLLHSENTIRETADEVAGKVERHITSYIAALEK
HREILLASVKKRTENKLDTVRNQQRELEKTLKDISHSCDFTSQLLAFGTHSEIITLQPSV
MHRLQNLSKYQCSTVPRPVHNFIEFRANKPVKAWVEGDVIGNLAGNKRSSRLLRPGLEID
ICGDVFSPVVEPKYCTAHGEGIHSSCVRHPSEFSIITKNFAREKLESGGESIIVTLDADV
VTPTSIKKPRVHVADKKDGTYRVLYVVHAPGSYRLSVEVSGEHIHGSPFSITAIDSKAQI
HSGVFHCCCYCSSGGDKNSTCACRSVMPGGYNGCGHGHDGHPGMAHWSCCGNTIEASSCS
SFQPRIMEQPQPILLSGTPIPVLRSQIQRAYSTLPTRGNYAKTYARQRSADDYLYASTST
LRNQSVKQIDPQAFIQRQTRPKSACTSKEEIRTVTL
Nucleotide sequence
Length: 4,762
>Harore.CG.MTP2014.S147.g07099.01.t
AGATCAGCTTTCCTGAAATGCTTACTGATCAGCTTACTTACATGAACATACACTTTGGTT
AAAGTGCAGTAATTAGTAGAAATTTGATAATATTATTACTAGTATTCACTTCCCATCAAT
CATGAGTACCAAAAAGTCGGAAATGAAGCGTGGGGAAAACAGAAAAGGTGGGTCCCATAA
AAGGGGAGCCATGAGACACTCGTCGCCAGTACTGGACAGCGAGGGAATTAAAGAAAAAAT
TACTGAATCCAAGTCAAGTCAATTGAGATCGGAGCAAGAGAGGAATGTGAAATTGAATGC
AAACAGAAGCTCGAACAGCAGCGATGTAAGCATGCCTGGACAGAATCTCCACACGGATTC
TGGCATATCCAGTTCGGATTCTCTAGCCGGATATGACAAAAAACTGTCGGCAGATGACCG
TGAAGCCATGTCAGACCTTGTCCAGCTGGACAAAGACCTGGCAAAACTGGGCATACAGGG
AAACCTCTGCTCCAATATCACAGAAGATTTTTTTAAAGATACGACGAAAGCTTTGTTCAA
CCCTGATAAGTTTCCTGCTGTGGAAAATATCACACTGCCAATGAAAGAAACAGATTTATC
AGGAGATAATACCCCAGACACTTCAGCTAACTCTATATTTATGACAGCGGTGGGCTCGAA
CGTCCATACACCTGATAGCGATCATGCTTTGCAATGGACCGACGAGTCAACAGACTGTTC
ATCCGGACCCAAGCAGTACAACGGCGGTGATTTCAATGCGATAGATTCAAAATTATACTG
CTTTTTATGCGGAGAACTGTTCACTAGTCCAAGACTGTTGCCTTGCCTCCACACCTTCTG
TTCGGATTGCCTCCAAGGTCGTATACAAGTAGATGATGCTTTGAGTAGTAGCCTGAATAC
TACAGCTTCCTCTTCCAGTGACAGTTCGTGTGTGGGGAGACAATCGCTAACATGTCCTAT
ATGCTCAGCAGAAGTGAAGCTTTCTCTTGGTATTCATTCGCTCGCAGTAAACCATTTCGT
TCAGCGTCTCATTATGTTGCAAAATATGAAGATTGGTCATACAGTAAACCTCTCATGTGA
CCTATGTCCAGACAATTCACAGATTGCTGGACGATGCGTACAGTGTTCCGTTAATTTGTG
CTTGTTTTGTTCTGAAGCTCACAAGCGTCAGCGTCACACATCATCTCACACCATCCTTCC
TCCAGAGAGCAACGACACGAAGCACGGTAAAAAGAAACCTTATGCCGTTCCTATGATATG
TCAGCGACATTCTGGCGAAGAACTAAAGCTATACTGTGCTGACTGTACTGAGCTTGTATG
CAGGGATTGTTGTCTTAGTTCCAAGCACAAAGATCACAAATGCGAGTTCTTGACATCAGT
CATCAACCATAAAGTTTCTGAAATTAGGTCCGAATTTCAAATTTGCGACCCCAAGATTGA
AAAGTTACGACAAAGCATAGCTATGCTACTGCATTCAGAGAATACGATTCGAGAAACTGC
TGATGAAGTTGCTGGGAAAGTTGAAAGGCATATAACAAGTTATATCGCTGCTTTGGAGAA
ACACAGAGAGATTCTGCTAGCGTCTGTCAAAAAGCGTACGGAAAATAAACTAGATACAGT
GAGAAATCAGCAAAGGGAGCTCGAAAAAACACTGAAAGATATTTCTCATTCATGCGACTT
CACCTCACAGCTGTTGGCTTTCGGGACTCACTCAGAAATCATTACCTTACAACCTTCAGT
AATGCATAGACTACAAAACTTATCCAAATATCAGTGCAGTACTGTGCCCAGACCGGTTCA
TAATTTCATCGAATTTCGTGCTAACAAACCAGTCAAGGCATGGGTCGAAGGTGATGTGAT
AGGCAACCTGGCAGGGAACAAGAGATCGTCTAGGTTACTTCGTCCCGGGCTGGAGATTGA
TATTTGTGGAGACGTGTTTTCTCCTGTTGTTGAACCAAAGTATTGTACTGCCCATGGGGA
AGGTATTCATAGTTCATGCGTGAGACATCCGTCTGAATTTTCAATTATCACTAAAAACTT
TGCCAGAGAGAAACTGGAGAGCGGAGGGGAAAGTATTATCGTGACTTTAGATGCAGATGT
TGTTACACCAACCTCGATCAAAAAGCCCAGAGTTCATGTGGCTGATAAAAAGGATGGGAC
CTACCGAGTTCTCTATGTCGTTCATGCACCTGGTAGTTACAGATTATCTGTGGAAGTTTC
AGGGGAACATATACATGGGAGTCCATTTTCTATCACAGCCATTGATTCTAAAGCACAAAT
ACACTCTGGTGTGTTCCACTGTTGCTGTTATTGTTCCAGCGGTGGAGATAAAAACAGCAC
CTGTGCTTGCAGATCTGTTATGCCAGGTGGATATAATGGCTGTGGTCATGGCCACGACGG
TCACCCCGGCATGGCTCACTGGTCATGCTGCGGCAACACGATCGAAGCATCATCCTGTTC
GAGCTTCCAACCACGAATAATGGAACAGCCCCAACCGATTCTTCTATCCGGTACCCCGAT
TCCTGTTCTACGTAGCCAGATTCAAAGAGCCTATTCTACTTTACCTACCAGAGGAAACTA
TGCAAAAACTTATGCAAGACAAAGAAGCGCTGATGACTACCTGTATGCATCTACTTCAAC
TCTAAGAAACCAATCTGTAAAGCAGATCGACCCCCAAGCTTTCATTCAACGGCAGACAAG
GCCGAAATCGGCATGTACCAGTAAAGAGGAAATTAGGACTGTCACGTTGTAATCTTGTGA
AATTGATGAAGTTGTACTGGCCATGCAGTTACTTAGTATAAGTGTATCCATCGATGTGAA
GTTAGCTAAAGTGAAAGAAGCAATTGTTATCATAGTTGTGTTAGCTCATGACAATATACC
CCTTGTCTTCTACCAAATTACCTCAATGACTAGCTGCTAGAAAGTTTATAATATCTGAGA
AGCAGTTTTGTATTTCTTGAAAGCATTTACACTAACTCTTTTCCTTCCTGCGATATAGAT
CAAGTCGCATACATTTTAAATGCAGTTTGTCTTGAATAGTGCTTTACTAACATTCAGCAT
CGAAGAGGACTCGTTGACATTGTATTTATTATTTATTAAAATCGACAAAAAACATATTTG
CACATAAAATTGTTGGTATCCAGTGTTAATGATTGTTTTTGTCTTATTTACCTATGTAAT
AATATCAGTATTTCTGATCATAAAATTTCAATAAAAGTGTTGCTGAGAATAGATACAAAA
ATGAGAAAAATACAATTGGTGGTATATATTGTTATATATATGTTCAGTTTGTGACGGTGA
ATAATTCATTAATTTCGATTTATTTAAGAAGTGAAGATCAGCAACTACGGTTAAAAATCC
AAGTCTTCATCCGGATCCTCTTCATCAAAGTCATCCGCCTCATCAGGAGCATAATAAATA
AGTCCTCCTTCACCTGAAGAATTAGCTCCATCCATTTTCACCTCCAGATGACGTGGTTTA
GAGTATGGCATGACGAGCTCGCTTCTCTCCGATTTCTCTTTATCGCTCAAGTTCAGATTG
AAAGTAAGATCAGCAGCCGGGTCATCTGCCCCACTACCATCTCCCGCATCCATTCTATCG
GCTGTCCAGGGTTTTATATCGGTGAATGTTCCACGAATCATTGTGAATGTTTCTAAACTT
TTAACCACCTTTCCGGATGATTTCTTGTATGACAATTTGCAAACTCTATTACCAGAGTTT
TGCACAACGTTTTTTGACTTCCTTAAATTAACGAGTTGACTTTCATTCGTAAGTCCGATG
ACAGCATCCGCTAAATATTCCAATCCGAGTCTAATGCTATCATCGTGCAAGTCGTAACGA
AACAAGCAAACCAGCTGGTGAAAATCAGATTCTCTCTTAGATAACTGACTTGCATCTTGA
AGAAGGAAACAAACTTTCTGGAAATCACAGTGTCTTAGCATTGGTGATAAAGAATCGATG
AAGATAGAGCTGTTTTGATTTTTAGCTTCAGATTCATTAACAATTTTAAGTATATCAAAA
TTATCCGGGAATTTCGAACCAGTCGGATTGAGCCAGCCCAGTGGGTCAGAATAAAAGTCA
TGAATTGTTAGCTTATGTCTCGACTCCTTCGAACAAAGGTTTTCGAAACGACTGGGCGGG
TTCTCGAACAAGAACACGTGAACCCGGTCGCATTTGATCAAAGCCTTATTCACGAAAGCC
AAGAAAAAGTCTTGAGCAGAACAAGCAGATGATTCTTTGATTAAAACTAAGTTTGATATT
TCCTGCCCTTCGTACAACCGTGTCAACATTGTTAATTGTCCTATTATTTGATAGAATTTA
TCAATTTCCAGATTTTTGCTGATCAATCAATGGGTCCTCTGGTTCTAGGTCAATTTGATT
TTCCTCTAAAAATTCCTTTATTTTCTCTGTCAAGTTCGATGCTTTCTTGTCCAGCTGATC
CACACACTTTTCAAGGTTTGCCAGAATAGTATTCAAGTTATCAAATTCTTCTTGATCAAC
AGGAGATTCACTTGCAGGGTTTACACCGTTTGCTATCTCACTCACCTTCGAGGTATTGGT
GTTGTTCTCTGTTTGGTCACCGCCAGCAGCCATCCCTTCACTTTCTACGAAGGGGGTCTG
GTCAATTAACTCACGGCTATGTTCACTTCGGTGTGCGACCAAGGTTACGTGAGCCGCAGT
AGGGAACCGCCCGCGATACCGGTATATTAGAAAGAATCTATACAAGGTTACTGCGCTATG
ATTGCCATTACAGGAACTTTTG
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[214-290] 6.2E-13 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[220-282] 10.173 |
| SMART |
Znf_RING (IPR001841) - T[220-281] 1.4E-7 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[220-279] 4.4E-9 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[235-244] . |
| SMART |
Znf_B-box (IPR000315) - T[314-361] 0.005 - T[375-417] 8.8E-5 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[375-428] 12.102 |
| Pfam |
Znf_B-box (IPR000315) - T[378-415] 2.7E-7 |
| CDD |
Znf_B-box (IPR000315) - T[379-417] 1.66151E-7 |
| SMART |
Bbox_C (IPR003649) - T[428-550] 0.0071 |
| ProSiteProfiles |
Filamin/ABP280_repeat-like (IPR017868) - T[607-713] 21.301 |
| Gene3D |
Ig-like_fold (IPR013783) - T[608-719] 1.9E-20 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[609-713] 9.34E-18 |
| Pfam |
Filamin/ABP280_repeat-like (IPR017868) - T[610-709] 6.9E-19 |
| SMART |
Filamin/ABP280_rpt (IPR001298) - T[611-716] 4.3E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TIF1A_HUMAN | 25.708 % | 122 | 2.15E-28 |
| TRI45_HUMAN | 34.435 % | 300 | 1.35E-91 |
| TRI33_HUMAN | 26.146 % | 119 | 2.94E-27 |