Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S148.g10693.01.t

Possible name(s)

TGFB1; TGFB2; TGFB3

Gene model

Harore.CG.MTP2014.S148.g10693

Location

S148 [22,024 / 23,748]

Sequences

Amino acid sequence

Length: 245

>Harore.CG.MTP2014.S148.g10693.01.p
MTRQAVKIRDISHSGHLSFKRLYLFFNHTYLHSGSNLGMEMTVPCPAEDNFQGQRRRSST
RSFTEKMDILFAGSNRLINLARAGRGDRMGDHTEIVSMKKDLYPHLVIMMRSEAAQQQNN
IKGNGRRRKKRSLDADYCFSKNPNESNCCLRELYIDFRKDLKWNWVHAPTGYKANFCAGA
CPYLWSMDTQHATILSLYKSMNPRASSSPCCVPHTLNPLTIVYYNKGKFKVTQLSDMILL
SCKCS

Nucleotide sequence

Length: 738

>Harore.CG.MTP2014.S148.g10693.01.t
ATGACGCGTCAAGCTGTTAAGATTAGAGACATTTCACATTCAGGACATCTTTCGTTTAAA
CGTCTCTATCTGTTTTTCAATCACACTTACCTTCACTCAGGTTCTAACCTTGGTATGGAA
ATGACAGTACCGTGTCCAGCAGAAGACAATTTTCAAGGACAAAGAAGAAGATCCTCCACG
CGCAGCTTTACTGAAAAAATGGACATATTATTTGCAGGTTCAAATAGACTTATAAACCTT
GCCAGGGCAGGACGTGGTGACAGAATGGGCGATCACACTGAAATAGTAAGCATGAAAAAA
GATTTGTATCCTCATCTGGTCATCATGATGAGGTCGGAAGCTGCCCAGCAGCAGAACAAC
ATCAAAGGCAACGGACGCAGAAGGAAGAAGCGCTCGCTCGACGCCGATTACTGCTTTTCC
AAAAATCCGAACGAATCCAATTGCTGTTTGCGAGAACTCTATATAGATTTTCGTAAGGAT
TTAAAATGGAACTGGGTTCACGCTCCTACTGGATACAAAGCAAATTTCTGTGCCGGTGCA
TGCCCCTACTTGTGGAGCATGGATACTCAACACGCGACCATACTCAGTCTGTATAAAAGC
ATGAATCCAAGAGCCTCATCTTCACCTTGCTGCGTGCCACATACTCTTAATCCATTAACC
ATCGTGTATTACAATAAAGGGAAATTCAAAGTTACTCAGCTATCTGACATGATTCTTCTC
TCGTGTAAATGCAGTTGA

InterProScan

PANTHER	TGF-beta-rel (IPR015615) - T[30-245] 1.6E-64
ProSiteProfiles	TGF-b_C (IPR001839) - T[128-245] 35.898
Gene3D	Cystine-knot_cytokine (IPR029034) - T[132-245] 1.4E-37
SUPERFAMILY	Cystine-knot_cytokine (IPR029034) - T[141-244] 2.75E-33
Pfam	TGF-b_C (IPR001839) - T[147-244] 1.2E-24
SMART	TGF-b_C (IPR001839) - T[148-245] 9.1E-35
ProSitePatterns	TGFb_CS (IPR017948) - T[166-181] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TGFB3_HUMAN	47.907 %	189	5.14E-58
TGFB2_HUMAN	45.536 %	183	1.2E-55
TGFB1_HUMAN	52.83 %	171	3.82E-51