- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S14.g02421.01.t
Possible name(s)
ACTA1; ACTA2; ACTC1
Gene model
Location
S14 [238,496 / 240,946]
Amino acid sequence
Length: 459
>Harore.CG.MTP2014.S14.g02421.01.p
MSDGEEDQTAIVCDNGSGLVKSGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE
AQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE
KMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHNVPIYEGYALPHAIAR
LDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFEQEMAPAASSTSLE
KSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANN
VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSFLTGDFLFFLIRELNNQKQ
HCRNHTQNALASRFQVFAVIQWSTRRTNYHICTHTTITPKQLQGTQKITLFHLLWDCLNI
IKNKGKCTKNKICRSRPVTKIQVYYIHSTHNAEFFSDFR
Nucleotide sequence
Length: 1,380
>Harore.CG.MTP2014.S14.g02421.01.t
ATGTCTGACGGTGAAGAAGATCAAACAGCAATCGTCTGCGACAATGGATCAGGATTGGTT
AAATCTGGTTTTGCCGGTGATGATGCTCCAAGAGCGGTATTCCCTTCTATTGTAGGACGA
CCAAGACATCAAGGTGTTATGGTAGGAATGGGACAGAAAGACAGTTATGTTGGAGATGAA
GCTCAAAGTAAGAGAGGAATCCTCACACTCAAATATCCAATTGAACATGGAATCATCACC
AATTGGGATGATATGGAGAAAATCTGGCATCATACTTTCTACAATGAGCTCCGTGTTGCT
CCTGAAGAGCATCCAACTCTTCTTACAGAAGCTCCATTGAATCCAAAAGCTAACAGAGAA
AAGATGACACAAATTATGTTTGAAACTTTCAATGTACCTGCTATGTATGTTGCCATCCAG
GCTGTACTTTCTCTCTATGCTTCTGGAAGAACAACTGGTATTGTTCTCGATTCTGGTGAC
GGTGTTTCCCATAACGTACCAATCTATGAAGGATATGCTCTCCCTCATGCTATTGCACGA
TTGGATTTAGCTGGTCGTGATCTTACTGATTACTTAATGAAGATCCTCACAGAAAGAGGA
TACTCTTTTGTTACGACTGCTGAACGAGAAATAGTTCGTGATATCAAAGAGAAACTGTGC
TATGTTGCTCTTGATTTCGAACAAGAAATGGCACCGGCAGCTTCCTCTACATCTCTAGAA
AAGAGTTATGAGCTTCCCGACGGTCAAGTCATCACAATCGGAAATGAGAGATTCCGTTGT
CCTGAAACCCTATTCCAACCATCCTTCATTGGTATGGAATCTGCCGGTATTCATGAAACA
ACATATAACTCTATCATGAAATGCGATATTGACATTCGAAAAGATCTTTATGCAAACAAC
GTACTTTCCGGAGGAACCACCATGTATCCTGGTATTGCTGATCGTATGCAAAAAGAAATC
ACTGCTCTTGCCCCAAGTACCATGAAGATCAAAATCATTGCTCCTCCCGAACGTAAATAC
TCATTTTTAACTGGTGATTTTTTATTTTTCCTCATTAGGGAATTAAATAATCAAAAACAA
CATTGCAGGAATCACACACAGAATGCATTAGCTTCTCGCTTCCAAGTATTTGCAGTAATT
CAATGGTCAACAAGAAGAACAAATTATCACATTTGTACACACACAACAATCACACCAAAG
CAATTGCAAGGAACACAAAAAATCACACTGTTTCATTTATTGTGGGACTGTTTGAACATA
ATTAAAAACAAAGGAAAATGCACAAAAAATAAGATCTGTAGATCGCGTCCGGTAACAAAA
ATACAGGTTTATTACATACATAGTACACATAATGCAGAATTCTTTTCAGATTTCAGATAA
| PANTHER |
Actin (IPR004000) - T[5-346] 9.6E-239 |
| Pfam |
Actin (IPR004000) - T[7-345] 1.6E-122 |
| SMART |
Actin (IPR004000) - T[8-368] 1.3E-192 |
| PRINTS |
Actin (IPR004000) - T[29-38] 1.8E-57 - T[52-63] 1.8E-57 - T[64-86] 1.8E-57 - T[118-131] 1.8E-57 - T[143-162] 1.8E-57 - T[239-255] 1.8E-57 |
| ProSitePatterns |
Actin_CS (IPR004001) - T[56-66] . |
| ProSitePatterns |
Actin/actin-like_CS (IPR020902) - T[107-119] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ACTA_HUMAN | 96.188 % | 687 | 0 |
| ACTS_HUMAN | 95.894 % | 686 | 0 |
| ACTC_HUMAN | 96.188 % | 687 | 0 |