- Transcript 'KH2012:KH.C4.516.v3....' >
- Transcript 'KH2012:KH.C4.435.v3....' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S14.g04532.01.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
S14 [564,437 / 566,118]
Amino acid sequence
Length: 435
>Harore.CG.MTP2014.S14.g04532.01.p
MRESRLLNSSMADKDNYDEAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLP
EVAKPEGKDYAIHKLILGTHTSDEQNHLIIASVQLPTDDATFDASHYDSDRGEFGGFGSV
SGKIEIETKINHEGEVNRARYMPQRPCIIGTKTPSSDVLVFDITKHPNKPDPNGICKPDI
RLKGHQKEGYGLSWNPSMPGHLLSASDDHTICLWDVRDKPKDARELMAKSVFTGHTAVVE
DVSWHLLHDSLFGSVADDQKLLIWDTRCANTNKPSHIVEAHTAEVNCLSFNPFSEFILAT
GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG
EEQSAEDAEDGPPELLFIHGGHTAKISDFSWNINEPWVICSVSEDNIMQVWQMAENIYND
EEPDAPNAELEQTST
Nucleotide sequence
Length: 1,308
>Harore.CG.MTP2014.S14.g04532.01.t
ATGAGAGAAAGTAGACTTTTAAACTCCAGTATGGCAGATAAAGATAATTATGATGAGGCC
GTTGAAGAAAGAGTGATCAATGAGGAATATAAAATATGGAAGAAAAACACTCCCTTTCTA
TATGACCTCGTTATGACGCATGCCCTAGAATGGCCCAGTCTTACTGTCCAATGGTTGCCG
GAAGTTGCCAAGCCAGAAGGCAAGGATTATGCAATACACAAATTGATATTGGGGACGCAC
ACGTCCGACGAACAGAACCATCTTATTATTGCTAGCGTTCAACTCCCGACAGACGATGCC
ACTTTCGATGCTTCTCATTATGATAGTGACAGGGGAGAATTTGGCGGGTTTGGGTCAGTC
AGTGGTAAAATTGAAATCGAGACCAAAATAAATCACGAAGGGGAAGTCAATCGTGCACGT
TACATGCCCCAAAGGCCGTGCATCATTGGCACAAAAACGCCTTCTAGCGACGTCCTCGTT
TTTGATATCACGAAACACCCGAACAAGCCTGACCCGAACGGCATCTGCAAGCCAGACATA
AGGCTTAAAGGACACCAAAAAGAAGGATATGGGCTGTCGTGGAACCCCAGCATGCCAGGC
CATCTCCTGAGTGCCTCTGATGATCACACCATCTGTCTCTGGGATGTAAGGGATAAACCG
AAGGATGCACGTGAGCTCATGGCTAAATCCGTATTTACAGGGCACACGGCTGTTGTGGAA
GATGTGTCGTGGCATTTGCTCCACGACAGTTTGTTCGGATCGGTGGCTGACGACCAAAAG
CTTCTCATTTGGGACACAAGATGCGCAAACACAAATAAACCGAGTCACATAGTAGAGGCA
CACACAGCCGAGGTTAACTGCTTATCATTCAATCCGTTCAGTGAATTCATACTGGCGACT
GGTTCTGCTGATAAGACTGTTGCATTATGGGATTTGAGAAATCTCAAACTGAAATTGCAT
TCCTTCGAATCTCACAAAGACGAGATATTCCAGGTGCAGTGGTCGCCTCATAATGAGACC
ATTCTCGCATCGAGCGGCACCGATCGTCGTCTCAATGTGTGGGATCTCAGCAAGATTGGT
GAGGAGCAGTCAGCAGAAGATGCTGAGGATGGGCCTCCTGAACTACTGTTCATTCACGGT
GGACACACTGCTAAAATATCTGACTTTTCTTGGAACATCAATGAGCCGTGGGTGATATGT
TCCGTGTCAGAAGACAACATCATGCAAGTGTGGCAAATGGCTGAGAATATATACAATGAT
GAAGAGCCAGATGCTCCCAATGCAGAACTGGAACAGACTTCTACCTGA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[11-432] 2.5E-164 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[28-96] 2.5E-27 |
| SMART |
WD40_repeat (IPR001680) - T[123-162] 120.0 - T[175-215] 4.8E-6 - T[225-265] 0.039 - T[271-311] 1.1E-9 - T[315-355] 7.0E-7 - T[372-412] 0.011 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[129-418] 7.18E-51 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[182-217] 11.544 - T[232-267] 8.537 - T[278-314] 13.65 - T[322-364] 12.948 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[182-421] 33.669 |
| Pfam |
WD40_repeat (IPR001680) - T[182-215] 0.074 - T[273-311] 8.3E-7 - T[319-355] 3.5E-4 - T[376-411] 0.093 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[202-216] 1.5E-8 - T[298-312] 1.5E-8 - T[342-356] 1.5E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[202-216] . - T[298-312] . - T[342-356] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 28.041 % | 119 | 1.26E-29 |
| RBBP7_HUMAN | 83.135 % | 746 | 0 |
| RBBP4_HUMAN | 86.538 % | 763 | 0 |