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  1. Clone 'cien171117' > 
  2. Clone 'cien51892' > 
  3. Clone 'cima874182' > 
  4. Clone 'cima86910' > 
  5. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S15.g12550.01.t

Possible name(s)

LRP1; LRP1B; LRP4

Gene model

Harore.CG.MTP2014.S15.g12550

Location

S15 [545,874 / 548,262]

Sequences

Amino acid sequence

Length: 371

>Harore.CG.MTP2014.S15.g12550.01.p
MFSKGHKGKTVTVTIDPASQYLYWSDKKSPSVNRAIMDGSRFSNIAKSYANSIIIDPHTG
NIVYSDNDADSIMVAKDDGSEGRTIVRPEPSTSNATSIRMITQDIKYKHLYWTDTFSKEG
EGKVMRCKMDGSGKEVVLDKLNWPHAITIDHKTNRLYVAEAKTAIIYELDLTALVAINST
SASQSKSTKYDVSRHLTRISPYIIDLKIHEGMAYVVDGKSSRLERFNLTEGPKSMAPYGP
AEFFRVTTVSVYSNALYNKYISNYIYLNKHRYFLPETSNNPCNNNNCRSLCVAMSDTDHK
CLCADGKKAYGPICIDHTGIGKTEIFIVSDYTAPKYDRCPDDQDISLPTCSATVDFSWTP
PKWTDDKTSKI

Nucleotide sequence

Length: 1,116

>Harore.CG.MTP2014.S15.g12550.01.t
ATGTTTTCTAAAGGACACAAAGGAAAGACAGTAACAGTGACCATAGATCCAGCGTCCCAA
TATCTATATTGGTCAGACAAGAAGAGTCCTTCCGTCAACCGTGCCATTATGGATGGTAGT
AGATTTTCTAACATCGCAAAATCATATGCTAACAGCATAATAATCGACCCTCATACTGGA
AACATAGTCTATTCGGACAACGACGCAGACAGCATAATGGTAGCCAAGGACGACGGGTCT
GAAGGCAGGACCATTGTAAGGCCGGAACCAAGTACAAGCAATGCAACTAGCATTAGAATG
ATCACTCAAGATATCAAATACAAGCATTTGTACTGGACTGATACATTTTCGAAGGAGGGA
GAAGGCAAGGTTATGCGTTGTAAGATGGACGGTTCGGGTAAAGAAGTTGTACTGGATAAA
TTGAACTGGCCGCACGCTATCACAATAGACCACAAAACAAACAGACTTTATGTTGCTGAA
GCTAAAACTGCTATCATTTATGAACTGGACCTAACTGCACTCGTTGCAATCAACAGTACG
TCGGCAAGTCAGTCTAAGTCTACCAAATACGATGTGTCGCGGCATTTAACGAGAATCAGT
CCGTATATTATTGATTTGAAAATTCACGAAGGTATGGCTTACGTCGTTGACGGGAAGAGT
AGCAGGTTGGAAAGATTCAATTTGACTGAAGGACCTAAGTCAATGGCACCGTACGGACCA
GCAGAATTCTTTCGAGTTACCACGGTTTCTGTCTACAGCAATGCATTGTACAACAAATAT
ATAAGTAATTATATATATCTGAATAAACATCGTTATTTCCTTCCAGAAACAAGCAACAAT
CCATGCAATAACAACAACTGCAGATCACTGTGCGTAGCGATGTCAGATACAGATCACAAG
TGCTTGTGTGCCGATGGCAAAAAGGCGTACGGTCCCATATGCATCGACCACACAGGAATA
GGTAAAACCGAAATATTTATTGTATCGGATTACACAGCGCCGAAGTACGATAGGTGTCCG
GACGATCAAGATATATCACTACCTACGTGTTCCGCTACCGTTGACTTTTCATGGACACCG
CCGAAATGGACCGATGACAAAACAAGTAAGATTTAA

InterProScan

Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[3-304] 1.2E-40
SMART
LDLR_classB_rpt (IPR000033) - T[3-42] 2.4 - T[43-82] 27.0 - T[83-134] 0.063 - T[136-174] 100.0
ProSiteProfiles
LDLR_classB_rpt (IPR000033) - T[20-40] 8.091 - T[60-102] 7.116 - T[108-153] 12.012 - T[359-371] 4.935

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LRP1_HUMAN 25.249 % 85.1 9.9E-18