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  1. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S162.g04142.01.t

Possible name(s)

SMCHD1

Location

S162 [75,268 / 97,698]

Sequences

Amino acid sequence

Length: 2,118

>Harore.CG.MTP2014.S162.g04142.01.p
MMSDEDAYVIVYDRRQTSEEGKKITIGGVFCYNEFIQKIKQMTCFVCWIVISVCDHDLCD
WVLISIVCPSHDINLVEDDEFVVTTTNRNPVVDDDSYVKLIESGDTLYILESIDQPLLAP
VSEKIEFQPHYDTLIKSGIYEYYASEGHVNPLPFAFAELIDNALAATVNNRGSRNIDLTL
QFDDSSSGQSTICVSDNGMGMSSRQLNNWAIYRLSKFNRKETKQRRNIFEDDVLSSGTSH
SMEPKLKYMMDAPKSLNSDISWFGVGGKQAIFFIGSATRIISKPFNSCDVHEFTLSKDEF
RRKEANRETIYSGYIRNRKAGDSSHITGNEEVTRQLIATETDEGRADTGFTSVIITGIDP
KHITFMKQGFGVWTRQLSHIYHYYIHGPEGNTAMSRKRRNVGALDVNLNITMHERGKPSV
TVDLRQINDDLESQYIRTACNSFEFKAKTDGGSGIVEGIIRYHPFMYDRETFPLDPNADD
DFSDYEAPDEPPARGRRPIFECYWNGRLIPYTFVDDFDWCRAPRKRGNIPLECYSRVSGC
LFTNDRFQVSTNKLTFIDLEAKLRDRSTVFTRMILGQEQRAHIQRQFNDWLRECHEKYDK
QVKFLNFIESYPRTDIFGRKPITVYGAIEWDGKIFKEGQLVRTQRTTPVVLGRIKRFLLL
GAHEGDVFAVGGEMEMVQEPESLYGEIRRFPLTKLDRVVSSSVVLDLIQEEEQKLPDKLV
LSWPEGNEVKDGDSRQIGMTIGRCTWFSGAMRIEIHNRRNESLQKLPSNAGGRKLLIEQR
FTYTPSVRGSSPREIASHVTSHGRTWPYWFKKMDNIKSLGTYTIHLQTVLNESEASTYAD
GRTLPHMKISFTIREAPPSRFLVGILESPLRIGEPFDIPLELQDKYGHPTEAAVSDKPII
ESEELDISFDSVECKGNTLVMKSVVAIGSVISQHGKSFTVTVIIPGLERESQTMKIRLLP
GKPHSIKILSLTKNGDKQEVNKDDGEEDSDLEHSGYHFEIENLSNISLDVAVIDLARNVT
LQSNLLVQAKFPPSCGVSPMKCDCSMSGQGVLSGRIAMKKLKKETKIIKTKIEILGCKNT
ESVLCSFAVQPSTKVSAIEIFYVDPNNEEEINLKSGSDIRWPAGDILTKLSFRLLDEVKR
EVTLNKNICSGLKVNWTNRVSIEQLCASELPNIRVPTNMTDVKFCQVVFAGQKNLEFSFS
IRPIAGEPAALKCKIVGSRVTQIGVIRDSPVAVTILDCYGNKLPIKEGQFNSLRVTGEGL
DETLVVKTIENNQFLLNNIQFNEGPLGSRELCVVYGNDDTIKEYVLLQLVAGTPAMIEVQ
GWTDIEKPLAILSGTRIPEPIKVQLKDGWGNPSPLLGVKVLLGKDSGLKLTPNPGVLSTD
ETGCATFGKFSVSGKRGEYNLSPRVVINRSTIEGIKLKLSVLPNTENPVSIKVKYDKDLN
TVMAGSTWPDFTISVLSEEGTPVTSSVHICMAVWSGKPNKDKSVPTSAEFHRTDKPSLGT
QCFQGITAATNAGDYCLCFCLCESKNSRNFTMISEIIKVKVYPGPPYKLYPDVDPGTPTV
SNSKISRTIVRNLTLILKDCHGNRTGQDLDSNVVVTIETCDETLKSIEVPRFEGNSVRLR
VPYINGSVRFQSLLLQEKSPGSDGGQYILHCEMESDQIDQKILPYRLKFLFYNDVEKQNR
MSVLVKQRDILKNAIESYESLFNLHETLLTELQKTLKDAEEKKILILKELRKRDVELSPE
ITLKNIDKLIESFAMDREEIFNQPRRHCMLKEYPDQSPEILGKIGHLAVILDDDVGRVLS
WHMMGDMDCLVTFTTKKAKDVHRTTGGTQQLLPLDSIYKKNLPDHTRPLPHLRAGVKHAV
RNVTGNPVFARDMLYYPKDPDSCKIVFGMLLGETLIMDDLDSANAYRNQVVKYTYCPTIL
TRTGERIRSNGKFGGSQNRAPSFERLKGAVFGAKLPMFYDERKRQIDVLGNFKTSMLEYN
SAVIELTNHETSLKTDEMLKKKLEHKEAVERLKEIELKIGLTKELSPRSSQRKTKASNVR
YDSETVSSAEKIIVLLIAVILQIFSSYKTAHEYCVQEGGSMGNLEILKKLRVELSNLQPF
VLQGVQYTDSIQQTESGL

Nucleotide sequence

Length: 6,744

>Harore.CG.MTP2014.S162.g04142.01.t
AGGACAGAAAATTTAGCATATGCATTTAATATTTCGCTATATTTTAGTGTTTTTACTTGA
AATTTATGAGAATCGAGGTACATGATGTCAGACGAGGATGCGTATGTAATCGTTTATGAT
CGTCGACAAACGAGTGAAGAAGGAAAAAAAATTACGATTGGAGGTGTTTTCTGTTACAAT
GAATTCATTCAAAAGATTAAACAGATGACATGTTTCGTTTGTTGGATAGTAATCTCAGTT
TGTGATCATGACCTATGTGACTGGGTTTTGATTTCAATTGTGTGTCCTTCACATGATATT
AACTTGGTTGAAGACGACGAATTTGTAGTTACCACCACGAATCGAAATCCTGTTGTCGAT
GACGATAGCTATGTGAAATTGATTGAATCCGGCGACACTCTCTATATTTTGGAATCGATC
GATCAACCATTACTTGCTCCCGTGTCGGAGAAAATAGAATTTCAACCTCATTACGACACT
TTGATCAAGAGCGGAATTTATGAATATTACGCCAGCGAAGGACATGTCAATCCATTACCA
TTCGCTTTCGCTGAACTTATTGACAATGCTTTGGCTGCAACTGTGAACAACAGAGGAAGC
AGAAACATTGATCTAACTTTGCAGTTTGATGACTCATCATCTGGACAAAGCACAATCTGT
GTCAGCGATAATGGAATGGGGATGTCGTCAAGGCAACTGAACAACTGGGCGATTTATCGC
TTGTCAAAATTTAATCGGAAAGAAACAAAGCAAAGACGAAACATTTTTGAAGATGACGTT
CTGTCATCCGGTACCTCCCACTCGATGGAACCAAAGTTGAAATATATGATGGATGCTCCG
AAATCCCTCAACAGCGACATCTCGTGGTTTGGTGTAGGAGGAAAGCAAGCGATCTTTTTC
ATTGGAAGTGCGACAAGGATTATTTCGAAACCTTTCAACTCCTGTGATGTTCATGAATTT
ACTTTATCAAAAGATGAATTCAGAAGGAAAGAAGCGAACAGAGAGACGATCTACAGCGGT
TATATAAGAAATAGAAAAGCTGGCGACTCCTCACACATCACAGGGAACGAAGAAGTCACG
AGACAACTGATCGCCACGGAAACGGACGAAGGTCGGGCGGATACCGGATTCACAAGCGTC
ATTATCACTGGAATTGACCCGAAGCACATTACGTTCATGAAACAAGGCTTCGGAGTTTGG
ACTCGTCAACTCTCGCATATTTATCATTACTATATACACGGACCTGAAGGAAATACTGCT
ATGTCCAGGAAAAGAAGAAATGTTGGAGCTCTTGATGTCAATTTGAATATCACGATGCAT
GAGCGTGGCAAACCGAGCGTGACCGTTGACCTTCGACAAATTAACGACGACCTTGAATCT
CAGTACATTAGAACGGCTTGTAATTCGTTTGAATTTAAAGCAAAAACTGACGGAGGAAGT
GGAATAGTTGAAGGAATAATTCGTTATCATCCGTTCATGTATGACAGAGAGACGTTTCCA
CTAGATCCAAATGCAGATGATGACTTCAGTGATTACGAAGCCCCGGACGAACCCCCAGCT
CGTGGTCGACGACCCATATTTGAATGTTATTGGAACGGCCGTCTCATCCCTTACACATTC
GTGGATGATTTTGATTGGTGCCGAGCTCCGAGGAAACGAGGAAATATTCCACTCGAATGT
TACTCGAGAGTTTCCGGATGTTTGTTCACCAACGATAGATTTCAAGTTTCGACGAACAAG
CTGACCTTCATCGACCTTGAAGCGAAACTTCGCGATCGCTCGACCGTGTTCACGAGGATG
ATTCTCGGACAAGAACAGAGAGCTCACATACAGCGACAATTCAATGATTGGTTGAGAGAA
TGTCATGAAAAATATGATAAACAGGTCAAATTTTTAAATTTTATCGAATCTTACCCTCGG
ACTGACATTTTCGGACGGAAACCCATAACTGTATATGGTGCCATCGAGTGGGACGGAAAA
ATATTCAAAGAAGGGCAGTTGGTCCGCACTCAACGTACGACTCCGGTTGTTCTAGGACGG
ATTAAAAGATTCTTGTTGCTGGGTGCTCACGAAGGAGATGTTTTCGCTGTCGGTGGTGAA
ATGGAAATGGTACAGGAACCAGAATCACTGTACGGAGAAATTCGTCGTTTTCCTTTGACG
AAACTCGATCGAGTCGTTTCATCTTCCGTTGTCCTCGATCTCATCCAGGAGGAAGAGCAA
AAACTTCCCGATAAATTAGTTCTGTCGTGGCCGGAAGGAAACGAAGTTAAGGACGGAGAT
TCGAGACAAATTGGAATGACAATTGGTAGGTGTACTTGGTTTTCAGGAGCGATGCGAATT
GAGATCCACAATCGTAGAAATGAATCTCTCCAGAAACTTCCGTCTAACGCTGGAGGAAGG
AAGCTGTTGATAGAACAACGATTCACTTACACTCCGTCAGTAAGAGGATCATCCCCGAGA
GAGATAGCCAGTCATGTGACATCACACGGAAGAACTTGGCCGTATTGGTTCAAAAAAATG
GACAATATTAAATCTCTTGGAACATATACAATTCATCTGCAAACAGTGTTGAATGAAAGT
GAAGCAAGTACTTACGCAGATGGACGAACTCTCCCGCATATGAAGATATCTTTCACGATA
CGTGAAGCCCCACCAAGCAGATTCCTCGTTGGAATTCTTGAATCCCCGCTACGAATTGGT
GAACCGTTCGATATTCCTCTCGAACTTCAGGATAAATATGGTCATCCGACGGAAGCTGCA
GTTTCTGATAAACCGATAATCGAATCTGAAGAACTTGATATTTCGTTCGACTCAGTCGAA
TGCAAGGGCAATACATTGGTGATGAAATCAGTTGTTGCAATCGGTTCAGTGATATCACAG
CATGGAAAGAGTTTCACAGTTACCGTTATCATCCCGGGTCTTGAAAGAGAATCGCAGACC
ATGAAGATAAGATTGTTGCCAGGGAAACCACATTCAATCAAGATTTTGTCGTTGACGAAG
AATGGGGACAAGCAGGAAGTGAATAAAGATGATGGTGAGGAAGACTCGGATCTCGAGCAC
TCTGGTTATCATTTTGAAATTGAGAATTTGTCAAATATATCACTCGATGTCGCTGTTATT
GATCTTGCAAGAAACGTGACATTGCAGTCGAATCTTCTCGTCCAAGCAAAGTTTCCACCA
TCATGTGGTGTATCTCCGATGAAATGTGACTGTTCCATGAGCGGGCAGGGAGTTCTCTCT
GGAAGAATCGCAATGAAAAAATTGAAGAAAGAAACGAAAATTATTAAAACGAAAATTGAA
ATTTTGGGATGCAAAAATACGGAATCGGTGCTCTGTTCCTTTGCTGTTCAACCTTCAACA
AAAGTGAGCGCGATTGAAATATTTTATGTCGATCCAAACAATGAAGAAGAAATCAATTTA
AAATCAGGTTCTGATATCCGATGGCCGGCCGGTGATATATTGACAAAATTAAGTTTTCGT
TTGTTGGACGAAGTAAAGCGAGAAGTTACGCTTAATAAAAATATCTGCTCTGGGCTCAAG
GTCAACTGGACAAATAGAGTATCGATCGAGCAATTGTGCGCATCGGAACTTCCGAACATT
CGAGTTCCAACGAATATGACGGACGTCAAATTCTGCCAAGTTGTTTTTGCTGGACAGAAA
AACCTGGAATTCTCATTCAGTATCAGGCCGATTGCTGGTGAACCTGCCGCTCTCAAATGC
AAAATCGTCGGTTCCAGAGTGACTCAGATAGGTGTCATCAGAGACAGCCCGGTCGCCGTG
ACGATACTGGATTGCTATGGCAACAAGCTGCCGATCAAGGAAGGACAATTCAACTCTCTC
CGCGTGACGGGCGAGGGTCTTGATGAGACCCTCGTTGTGAAAACGATTGAGAACAACCAA
TTCCTGTTGAACAACATTCAATTCAATGAAGGTCCGCTAGGCAGCAGAGAGCTATGTGTC
GTCTATGGCAACGATGACACAATAAAAGAATACGTCTTGCTCCAGCTAGTGGCAGGAACT
CCAGCAATGATTGAAGTTCAAGGATGGACAGATATAGAGAAGCCGCTCGCTATTCTGAGT
GGAACTCGGATCCCAGAACCCATTAAAGTCCAGCTGAAAGACGGATGGGGTAACCCCTCT
CCTCTTCTAGGGGTAAAGGTGCTACTCGGCAAAGATTCTGGCTTGAAACTTACCCCGAAT
CCCGGTGTCCTGTCCACTGATGAGACAGGATGTGCGACATTTGGAAAATTCTCTGTATCT
GGGAAGAGAGGCGAATACAACCTTTCACCGCGAGTTGTCATCAATCGATCAACGATCGAA
GGTATCAAGCTGAAATTGAGCGTTTTGCCGAACACAGAGAATCCCGTCTCGATAAAAGTG
AAATATGACAAAGATTTGAATACAGTGATGGCTGGATCTACATGGCCAGATTTCACGATC
TCAGTTTTATCTGAAGAAGGCACTCCGGTGACATCTAGTGTACATATTTGCATGGCAGTT
TGGTCTGGAAAACCGAACAAAGATAAATCAGTTCCTACATCGGCCGAATTCCACAGGACT
GACAAGCCGTCTCTAGGGACTCAATGTTTCCAAGGTATCACCGCGGCAACCAATGCTGGA
GACTACTGCCTCTGTTTCTGTTTGTGCGAATCGAAAAATTCAAGGAACTTCACGATGATC
AGTGAGATCATCAAGGTCAAAGTTTATCCAGGTCCTCCGTACAAATTGTATCCGGATGTA
GATCCCGGGACTCCGACGGTTTCAAACTCGAAGATTTCCAGAACGATCGTCCGAAATCTG
ACATTAATATTGAAAGATTGTCACGGCAACAGGACCGGTCAAGATCTGGATTCGAACGTT
GTCGTGACAATAGAAACGTGTGACGAGACACTGAAGTCGATCGAAGTTCCGAGGTTTGAA
GGAAATTCTGTTCGACTGAGAGTTCCGTACATAAACGGATCTGTCAGATTTCAGAGCCTC
TTGTTGCAAGAGAAATCTCCTGGAAGCGATGGAGGGCAATACATATTGCATTGCGAAATG
GAGTCTGATCAAATTGACCAAAAGATTTTGCCGTATCGACTCAAGTTTTTGTTCTACAAT
GATGTCGAGAAACAGAATCGAATGAGCGTTCTTGTCAAGCAACGTGACATATTGAAGAAT
GCGATCGAATCGTACGAGAGTTTGTTCAATCTCCATGAAACTTTGCTCACAGAATTACAG
AAGACATTAAAAGATGCAGAAGAGAAAAAAATACTGATTTTAAAAGAACTGCGGAAACGT
GACGTCGAACTTTCGCCTGAAATAACACTCAAAAATATTGACAAACTCATCGAAAGTTTT
GCGATGGATCGAGAGGAAATATTCAATCAACCGAGACGTCATTGCATGTTGAAAGAATAT
CCTGACCAGAGTCCAGAGATCTTAGGAAAGATAGGTCATCTTGCTGTTATACTTGATGAT
GATGTAGGAAGAGTTTTATCATGGCATATGATGGGTGATATGGATTGTCTCGTTACATTC
ACGACAAAAAAGGCCAAAGATGTACATCGAACCACCGGAGGCACTCAACAGCTGTTGCCT
CTCGACAGCATTTACAAAAAGAATTTGCCTGACCACACGAGGCCGTTACCACACTTACGT
GCAGGGGTCAAACATGCGGTCAGGAACGTCACCGGGAACCCAGTTTTCGCAAGAGATATG
CTGTATTACCCAAAAGACCCAGATAGTTGCAAAATAGTTTTCGGTATGCTGCTTGGGGAG
ACTCTGATTATGGATGATTTGGATTCAGCAAATGCATATAGAAATCAAGTCGTAAAATAC
ACATACTGCCCGACGATCCTGACACGCACCGGCGAACGTATCCGTAGTAACGGAAAATTT
GGCGGAAGTCAGAATCGGGCGCCGAGCTTCGAGAGATTGAAAGGGGCGGTGTTCGGAGCC
AAATTACCGATGTTTTACGACGAAAGGAAGCGTCAAATCGATGTCTTGGGGAATTTTAAG
ACAAGCATGTTGGAATACAATTCTGCTGTCATTGAACTGACTAATCACGAGACTTCGTTG
AAAACTGACGAAATGCTGAAGAAGAAACTTGAACACAAAGAGGCGGTAGAGAGACTGAAA
GAGATTGAGCTCAAAATAGGTCTTACTAAAGAACTATCACCGCGAAGTTCTCAACGAAAA
ACAAAAGCTTCAAATGTAAGATATGACAGCGAGACAGTCTCGAGCGCTGAAAAGATTATT
GTACTTCTAATCGCAGTAATCCTTCAAATTTTTAGCTCTTATAAGACAGCTCATGAATAC
TGCGTTCAGGAAGGGGGATCGATGGGGAACCTTGAAATCCTGAAAAAATTAAGAGTAGAA
CTCTCCAATTTACAACCTTTCGTATTGCAGGGTGTCCAATATACAGACAGTATTCAACAG
ACTGAAAGTGGCCTCTGACTTACGGACTTAATGTCTAATTTTAATTAATCAGTTCCTGAT
GTCTTGGCTCCCCCTACCTGTGTTGTTACAGTATTTGAAGTATCCGTATTCAACATTGTG
AAATTTTTAGGTTTTAACTCTGTGAAATCGCATCGTTTTCGATCACAATTTCTTTTTGAA
ATTTCGTTTTAATAATTATTTGTACTAGTTGCCACAAAAAATGTTTGGTTTCTCGCTGCT
ATTACGAGAAAGAAGGTTAGATTCAAAGCAATTCAATATTGCTTGCTTATGGTTTCTTAC
TGATCCATTCGCATGATCTAGAAT

InterProScan

SUPERFAMILY
HATPase_C_sf (IPR036890) - T[122-223] 6.55E-8
CDD
HATPase_C (IPR003594) - T[155-225] 0.00799026
SUPERFAMILY
SMC_hinge_sf (IPR036277) - T[1749-1941] 6.02E-15
SMART
SMC_hinge (IPR010935) - T[1778-1907] 1.3E-5
Pfam
SMC_hinge (IPR010935) - T[1780-1906] 6.4E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMHD1_HUMAN 43.052 % 1589 0