Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S164.g14911.01.t

Possible name(s)

RLIM; RNF115; RNF126

Gene model

Harore.CG.MTP2014.S164.g14911

Location

S164 [171,590 / 182,159]

Sequences

Amino acid sequence

Length: 357

>Harore.CG.MTP2014.S164.g14911.01.p
MAEAAVAVNRFFCHQCNEHIRVDISNMKCPLCQTGFIEELESNDIVNESASSDVDVQTTT
GNMASPLEMIHHSFMHYWPTPETPSGASYEDPADGISFFQINLQPQQGAAASSANAQGAE
VNGARPRTRLDRYNLRQRRRPSPTSRTGGNSRAESGAMPQDIFIEDFLQQILNGMEPAAM
FGPTATLRSEARAAPRGMFSLHGNPGDYAWGSNGLDNIITQMVSVPDCLEHISAMLQLLG
QLDSSGPPPAAASTIQRLPTIVITEDDVEAKKECSVCMDTFVVKDDAKQLPCTHIFHVEC
IEPWLKLHNTCPICRKNVERLTSSNSGCQVNTSASSSRSQSRTGTSSSGIYYGDGHD

Nucleotide sequence

Length: 1,539

>Harore.CG.MTP2014.S164.g14911.01.t
AGGCATTTTTGTGATTAAGCTAGTTCTAAGTGCATCATGGCTGAAGCTGCTGTAGCTGTC
AACAGATTTTTCTGCCATCAATGCAATGAGCACATCAGGGTTGACATATCGAACATGAAA
TGCCCGCTTTGTCAAACAGGATTCATTGAAGAACTTGAATCGAATGACATCGTGAATGAA
TCTGCATCATCTGATGTCGATGTCCAGACAACCACTGGCAATATGGCTTCTCCACTTGAG
ATGATTCACCACAGCTTCATGCATTATTGGCCAACTCCAGAAACTCCATCTGGGGCTAGT
TATGAAGATCCAGCCGATGGAATATCATTCTTTCAAATCAACCTACAACCACAGCAAGGA
GCAGCAGCATCATCGGCTAATGCACAAGGAGCTGAAGTGAATGGTGCGAGGCCACGAACT
AGATTGGATAGATATAATCTGAGACAAAGAAGAAGGCCGAGTCCGACAAGTCGGACGGGC
GGTAACAGCAGGGCTGAGTCAGGTGCCATGCCTCAGGATATTTTCATCGAAGACTTTTTG
CAACAAATTTTAAATGGCATGGAACCGGCAGCTATGTTTGGTCCAACTGCTACATTAAGA
AGTGAAGCTAGGGCCGCTCCCAGGGGCATGTTTTCATTACATGGTAATCCAGGAGACTAT
GCATGGGGGAGCAATGGTTTAGATAACATCATAACACAGATGGTCTCCGTACCCGACTGC
TTAGAACATATATCTGCTATGTTACAGCTTCTTGGCCAGCTGGACAGCAGCGGACCTCCA
CCTGCCGCAGCGTCCACGATTCAGAGGCTTCCCACAATCGTTATTACCGAGGACGATGTC
GAAGCGAAAAAAGAATGCTCTGTTTGCATGGACACATTTGTCGTGAAGGACGATGCTAAA
CAATTACCATGCACGCATATATTTCATGTAGAATGCATCGAACCTTGGTTAAAATTGCAT
AACACCTGTCCCATATGTCGCAAAAACGTCGAGCGTTTAACCAGTAGTAATTCTGGTTGT
CAAGTAAATACAAGCGCATCGTCTTCTCGGAGTCAATCCAGAACAGGGACATCATCTAGC
GGAATATATTATGGTGATGGTCATGACTGAAACCTTGTATTCAACCTGGTTAACATGCCA
GATATACAATAGATATTTTTCTCCGCCAAGAGCGCTTGGGAGAGCTATATAAGTCTCCAT
CTGTGCTTATACAGTGTGGAACTTTTTTTGTTAATGTAGCTGAGAAGTAGAAACGATCTG
ATTCCTTTGTGTATAGATGATTGGGTGTGTTCGTTCTTTCTCATCTAGCATACATATCTT
CGTAACCGCGACGGTAATAAACTTTCTACTTTGTTGTTTATTTTATGATTTGCTGTTTCT
TCTACTTACGGGGAATAAATTATAGGTTCAATTGATTATTTTATGTGAGATTAAACAATT
GAAAGTATGGTGTGATTTAGTTGGTTAGTACTTATTTATTTCTGTTTTAATTGTATCGCA
ATGTAGTGCTTTGAAAAGAAATAAAAATTGAAATAAACG

InterProScan

Gene3D	Znf_RING/FYVE/PHD (IPR013083) - T[240-321] 3.8E-22
Pfam	Znf_RING (IPR001841) - T[272-315] 2.2E-13
ProSiteProfiles	Znf_RING (IPR001841) - T[274-315] 12.593
SMART	Znf_RING (IPR001841) - T[274-314] 4.2E-7

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RN126_HUMAN	35.65 %	162	2.75E-47
RN115_HUMAN	32.931 %	159	3.51E-46