- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Moocci.CG.ELv1_2.S54...' >
- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Cisavi.CG.ENS81.R30....' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S169.g03627.01.t
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
S169 [31,682 / 43,302]
Amino acid sequence
Length: 666
>Harore.CG.MTP2014.S169.g03627.01.p
MKNIDMVGGNHICSDGVFTTPCSKLSDLLENNSWEQQKSEKSWRHHPYGTPLGASHNLKK
RLEKRRLDSGYSSCSPAASLFDSMCSVVQPPTKCIRFATSPVPINFTSEEEKESSIQKSS
DSIFKSLQSYSPVSDASENSPNLIPSIERENFLPPTRDVPEIFDIIWSENPTRGNDTVNA
KSNEIDDYSDIMKVLTEIPKCTGCEHRIFDRFILKVQDKPWHSQCLKCNDCSAQLSEKCF
SRGNLVFCKDDFFKRFGTKCTACGHGIPPTEVIRRAQDNVYHLECFCCFLCHEKMGTGDQ
FYLLEDNRLVCKKDYEQAKSRDADIENGVKRPRTTITAKQLETLKSAYNQSPKPARHVRE
QLSSETGLDMRVVQVWFQNRRAKEKRIKRDTGRQRWGHFFSRNQLPSGPTSPISAPVTTG
QKKRSNTKCGNRLIHCKDNQQNSQSHSSPLDGSPVFPIGSIGTGMQGEIGASFQSGCAVG
IEGTSDLPSVMDPKNLPPYSETLMSYTEANPSHFVHGQNPSDVTYMNTLPVGGSHVPLTA
VPQHNISAFSLPFHMEGNMVPDPSTQFMMATGHLGSQDTDLVSNSSGRSNFSDLSASPGS
CREEFSAFEQRVDGNLAGRNMNSGLASSRKLFFCSEIQCFPNLLVQHAFQDIFSHFTLNF
DRILIL
Nucleotide sequence
Length: 3,206
>Harore.CG.MTP2014.S169.g03627.01.t
AGGATTTAATTCTATTACATTTTATTCTTAGTAAGTTTTGACTGAGACTCGTGTAAACGA
GTCAGATACATCCGATGAATCTCATGTTCCATCAGGCGCGTAACAACAATAGCTTCATGG
TAGCGGCCACTTCAAATCAGCAACACCACAAAACTGCACTGCACGTACTCGAAGATAAAG
CCAGCGGGCAGGTCTATGATAATCAACGAATTATTGCAAGTGAACAACATAGTTACGGGG
AATATTACATAGACGAAGGAAAGGAAAACTCGATCCCCAGTGAATCATCAGCTCGCGACT
ATTGCGGAAAAGAATTAAACAAAATGGCGTCTGTGACAAAAGAGAGTTACGGAGGTGGTC
GGTTAGTGGATGAGGATGAGGATGATTACGATGATGAGGGCGACAGAGAAGTTTACGAAG
ACGATATCACGTTTGATGACGACGACGATGATGAAAACGATGACGATGATAGTGACGTAA
AAATGAACCTGAGAACGAACGTCAACAAATTGAGATTCGATTCCGGCTTTGAATATACCC
TGCCTACATCTTCTCCGGAAAACATGACCAGTTTTAATCTCATGTCGGATTCTAGTCACC
TCTTCTCCGATTATTCAAAACATAATTCGACGATCTTGGCGGATGGGAAATCCGGTACAT
CGTACTTGACGTCTACACCGCGTCGCATTTATGACAACACTAACATGATCAACATTCCAG
AAGAAACAAAGAACATTCCTACCTGCTATAATGGAAACAATCACGTTCCTTCAGAATCTA
TTTTCGATAATCCACTTTCTTCGGGAGCGAATCGTCGGATGACTTCTCCGGGTCATAAAA
TACAACCTTCGACGTGTTCGGACATGCTGTTTACCTTGCTGGCAAAGGACAACAAAATAG
AAGATGAAGAATATAGACATGGTCGGAGGAAATCATATCTGCTCAGACGGAGTATTTACA
ACACCTTGTTCTAAGCTTTCCGATTTGTTGGAAAACAACAGTTGGGAACAACAGAAATCG
GAAAAGTCGTGGCGTCATCATCCGTATGGAACCCCGTTAGGAGCTTCCCACAATCTTAAA
AAACGCCTGGAAAAACGAAGACTGGATTCAGGATACTCATCTTGCTCTCCTGCTGCATCT
CTATTCGATTCGATGTGTTCCGTCGTCCAACCTCCGACGAAATGCATTCGATTCGCGACA
TCGCCTGTGCCGATCAATTTTACCTCGGAGGAAGAAAAGGAATCTTCTATTCAGAAGAGC
TCGGACAGTATTTTTAAATCTCTCCAATCTTATTCCCCGGTCTCAGACGCTTCAGAAAAC
TCACCGAATCTTATTCCAAGCATAGAGCGTGAAAATTTCTTGCCGCCTACCAGAGACGTC
CCTGAAATATTCGATATAATTTGGAGCGAGAATCCTACGCGCGGAAACGATACGGTTAAC
GCGAAATCGAACGAAATTGACGATTATAGCGATATTATGAAAGTATTGACTGAAATCCCG
AAATGCACCGGATGTGAGCATCGTATTTTCGATCGCTTTATACTGAAAGTACAAGACAAG
CCGTGGCATTCGCAGTGTCTGAAATGCAACGACTGTAGTGCTCAGCTATCGGAAAAATGT
TTCTCGCGAGGAAATTTGGTCTTTTGCAAAGACGATTTCTTCAAGCGTTTCGGAACCAAA
TGCACCGCATGTGGTCACGGTATTCCACCCACCGAGGTCATAAGACGCGCCCAGGACAAC
GTTTACCACCTGGAATGTTTTTGTTGCTTTCTCTGCCACGAAAAAATGGGAACGGGCGAC
CAATTCTATTTGCTGGAGGACAACAGACTGGTTTGCAAGAAGGATTATGAACAAGCTAAA
TCTCGAGATGCGGATATTGAAAATGGTGTGAAACGACCACGAACGACAATCACGGCCAAG
CAACTTGAAACATTGAAATCAGCGTACAATCAAAGTCCCAAACCGGCACGCCACGTACGG
GAACAGTTAAGTTCCGAAACAGGCCTCGACATGAGAGTCGTACAGGTTTGGTTTCAAAAT
AGAAGAGCAAAAGAAAAGAGAATCAAGAGGGATACCGGGCGACAACGCTGGGGTCACTTT
TTCTCACGAAACCAGCTACCTTCCGGGCCCACATCACCCATCAGTGCACCTGTTACGACA
GGCCAAAAAAAACGTTCAAACACGAAATGCGGGAACAGACTAATCCATTGCAAGGATAAT
CAGCAAAACAGCCAAAGTCACTCTTCTCCTTTAGATGGATCGCCTGTATTTCCGATTGGT
TCAATAGGTACTGGAATGCAAGGAGAAATCGGTGCATCGTTTCAAAGTGGCTGCGCTGTC
GGTATAGAAGGCACAAGTGACCTGCCGTCAGTAATGGACCCTAAGAATCTTCCACCTTAC
TCCGAAACTCTCATGTCGTATACTGAAGCCAACCCCAGCCATTTCGTACATGGGCAAAAC
CCATCAGATGTTACCTATATGAATACGTTACCGGTCGGAGGGTCCCATGTTCCGCTGACA
GCAGTACCCCAACATAACATTTCCGCATTCTCTCTACCATTCCACATGGAAGGCAATATG
GTTCCGGACCCTTCCACGCAATTTATGATGGCGACCGGTCACCTCGGTTCCCAAGACACC
GATTTAGTTTCCAACAGCAGTGGAAGATCTAACTTCAGTGATTTATCAGCCAGTCCCGGT
TCCTGCCGAGAAGAATTCTCAGCCTTCGAGCAGCGCGTGGATGGCAATCTGGCCGGACGA
AACATGAATAGCGGACTCGCTTCGTCTAGAAAATTATTTTTTTGTTCCGAAATTCAATGT
TTTCCCAATTTACTTGTACAGCATGCTTTTCAGGACATTTTTTCACACTTTACGTTAAAT
TTTGACAGAATACTGATTCTATAACCAGCAAGAGTATTTTTCGCCTGATTGCAATATTTT
TCTTTGTTTCATATTTATTATTTTCCCTATTATTTGTTTTTTCCGCCATGGTATCGATTT
TCTTGCGTTTACTGTGAGCCAAAAGTATTTAATATAGTCACTGTGGAATCAAAATCTTCA
CTACTGGAAGAGCATTATATTTGCTTTGTAAAGGTTTTTCTATTTATGGTATACCGTATT
GTTCACTAGAATAATTTATCGAAAAAGGAAGGTGCATTTTCAAAGGACAATACTGAATAC
AGCTGGGCTACTGGGTTACGTACCTC
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[199-258] 13.811 - T[259-321] 11.336 |
| SMART |
Znf_LIM (IPR001781) - T[200-251] 1.2E-12 - T[259-314] 3.6E-14 |
| Pfam |
Znf_LIM (IPR001781) - T[201-256] 6.1E-12 - T[260-318] 1.6E-15 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[260-295] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[325-389] 7.7E-20 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[327-387] 18.026 |
| SMART |
Homeobox_dom (IPR001356) - T[329-391] 5.6E-22 |
| Pfam |
Homeobox_dom (IPR001356) - T[330-386] 1.5E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[330-388] 8.86655E-21 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[362-385] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 70.874 % | 332 | 5.23E-108 |
| LHX3_HUMAN | 68.889 % | 335 | 2.57E-109 |
| LHX5_HUMAN | 42.8 % | 233 | 6.22E-70 |