- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Phfumi.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C9.206.v1....' >
- Transcript 'Harore.CG.MTP2014.S6...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S169.g05511.01.t
Possible name(s)
PAX3; PAX4; PAX6
Gene model
Location
S169 [88,455 / 97,461]
Amino acid sequence
Length: 536
>Harore.CG.MTP2014.S169.g05511.01.p
MSTLPALPNMVTHQLCQKGPMVPAHMNPYQAPYSSSVALCLTNDKLSHKDYCADSGHSGV
NQLGGMFVNGRPLPDSTRQKIVELAHNGARPCDISRILQVSNGCVSKILARYYETGTIRP
RAIGGSKPRVATPEVVTRIARYKRECPSIFAWEIRDRLLNEGICNSENIPSVSSINRVLR
NLTTDVVTSNGLSYSEYGPRTCTSNDWQNTCTPWYNSGNGSVNTTSAYSGSVTTLKGETG
DENSQQEPSDETQARLQLKRKLQRNRTSFTQDQVESLEKEFERTHYPDVFARERLASKID
LPEARIQVWFSNRRAKWRREEKIRSQRNSATSGVSISSGPMSSGSSNSNISMTSAYGSYQ
GVPQHCPGAESYAAAQTYGTDGSVINGYDQYQCGTGQYTYSQMAEVQNHQHHQPTCSTSP
TAAVCYEAPRLTHLQSTEMMNASSPQRMHALNNGVHHQSYYPIHPATGLPAVSMNEQSLR
SILKQLLICLTQCIGLIEYNDDIVGVDVCPEVHNTNTIRWDHLPGVMEAGRVCSIN
Nucleotide sequence
Length: 1,611
>Harore.CG.MTP2014.S169.g05511.01.t
ATGTCGACATTGCCTGCGTTACCTAATATGGTTACACATCAACTTTGCCAAAAAGGACCG
ATGGTGCCAGCACATATGAACCCATATCAAGCACCCTATTCATCCTCAGTTGCCTTGTGT
TTGACCAACGATAAATTATCGCATAAAGATTACTGCGCAGATTCTGGGCACAGTGGTGTG
AACCAACTCGGCGGTATGTTCGTAAACGGTAGACCACTACCTGACAGCACCCGACAGAAA
ATCGTCGAATTGGCACACAACGGCGCGCGGCCTTGTGATATCTCTCGAATACTTCAGGTT
TCGAATGGATGTGTCAGTAAGATCTTAGCAAGATATTATGAAACGGGCACGATACGTCCA
AGGGCAATCGGAGGAAGTAAACCGCGTGTCGCGACGCCTGAAGTCGTTACTAGAATCGCA
AGATATAAAAGAGAATGTCCGAGCATATTTGCTTGGGAAATACGGGATAGACTACTCAAT
GAAGGAATTTGCAATTCAGAGAACATTCCGAGCGTGTCTTCAATTAATCGCGTACTTCGG
AATCTAACCACTGACGTAGTCACAAGCAACGGATTATCCTATTCAGAATACGGTCCAAGA
ACTTGCACAAGTAACGACTGGCAAAACACCTGTACGCCATGGTACAACTCTGGTAACGGG
TCAGTGAACACGACTTCTGCATACAGTGGTTCGGTGACAACATTAAAAGGCGAGACAGGT
GACGAAAATTCTCAACAAGAACCGAGCGACGAGACACAAGCTAGATTGCAATTGAAACGA
AAGTTACAACGAAACAGGACTTCGTTTACACAAGATCAAGTGGAGTCTTTAGAGAAGGAA
TTCGAAAGAACGCACTACCCAGATGTTTTCGCAAGAGAAAGACTAGCGAGTAAAATAGAT
CTCCCAGAAGCCAGAATACAGGTATGGTTTTCTAATCGCCGAGCAAAATGGCGGCGGGAG
GAAAAAATTCGCAGTCAACGCAATAGCGCCACCAGCGGCGTGAGTATAAGCAGCGGTCCG
ATGTCGTCTGGGAGCAGCAATTCGAATATATCGATGACATCTGCTTATGGATCGTATCAA
GGAGTTCCTCAGCATTGTCCAGGCGCAGAATCTTACGCAGCTGCACAAACGTACGGTACT
GATGGTTCTGTTATAAACGGATATGATCAATACCAATGTGGCACTGGTCAATACACGTAT
TCGCAAATGGCCGAAGTCCAAAATCACCAGCACCATCAACCTACCTGTTCTACATCACCT
ACCGCTGCTGTATGTTACGAAGCACCTCGTTTAACGCACCTGCAATCTACTGAAATGATG
AACGCATCCAGTCCTCAACGTATGCACGCACTGAACAACGGTGTACATCATCAATCGTAC
TATCCTATTCATCCAGCTACCGGTCTTCCAGCCGTGTCTATGAATGAACAATCACTCCGG
TCCATCCTGAAGCAATTACTGATTTGTCTAACTCAATGTATTGGGCTCATCGAGTACAAT
GATGATATAGTTGGAGTAGATGTCTGCCCAGAAGTTCACAACACGAATACTATCAGATGG
GATCATCTTCCGGGGGTAATGGAAGCAGGTCGGGTCTGCTCCATCAACTGA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[49-124] 1.7E-41 - T[125-187] 1.0E-32 |
| Pfam |
Paired_dom (IPR001523) - T[56-180] 4.7E-69 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[56-182] 63.853 |
| SMART |
Paired_dom (IPR001523) - T[56-180] 3.8E-89 |
| CDD |
Paired_dom (IPR001523) - T[56-182] 6.46074E-81 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[58-181] 5.38E-39 - T[251-321] 1.92E-22 |
| PRINTS |
Paired_dom (IPR001523) - T[60-75] 9.9E-42 - T[78-96] 9.9E-42 - T[98-115] 9.9E-42 - T[116-133] 9.9E-42 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[90-106] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[260-320] 20.05 |
| SMART |
Homeobox_dom (IPR001356) - T[262-324] 1.2E-24 |
| CDD |
Homeobox_dom (IPR001356) - T[264-321] 7.53934E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[264-319] 7.2E-22 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[295-318] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX3_HUMAN | 48.689 % | 255 | 5.55E-79 |
| PAX6_HUMAN | 62.573 % | 399 | 1.15E-135 |
| PAX4_HUMAN | 48.763 % | 253 | 8.42E-80 |