- Transcript 'KH2012:KH.C11.657.v1...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S16.g00100.02.t
Possible name(s)
HERC2; RCC2
Gene model
Location
S16 [516,120 / 520,194]
Amino acid sequence
Length: 533
>Harore.CG.MTP2014.S16.g00100.02.p
MPRRKNDPNKIETPAVKKSKNDNIDSLAETEDSETSVTLPLPTEEGELVICGGVNWSLNG
RKKPRKGDEKYAKVGRNLFKPHRYKALSGVKITRVISGCLANHNLFITKEGKVYSWGRNE
FGQLGHGDTDRYDLPKQIESLNHLKIVHAAAGRNHTLCLTESGKVYSFGENTQGQLGLGV
HGFTIPSPTQLAYRGKPIVDISCGAEFSMVVDTDGSVHSFGCPEYGQLGNNTDGKYFVSG
NKLAYDSVFTAFRIPLWTEKTRSGQVLPITDVKITGVACGANHTIAVDSKKRIFTWGFGG
YGRLGHSEQKDEHTPRLVEAFNREMRGAVKIYAGSSFSLAVNETGVTMFWGLQGSISSRE
TTMYPKPVQDLQGWNVKSIGCGQRHIVVAADESLIVWGVGTSNGELGLGESRKSSANPQI
MKAMEGLMPLEISCGFVHTLIKVRCNNEEETGKLSSLPEYDPFFDVVLHVSYSSTSLLVL
EPVSLLYAIKWYRSSYINLIKIHADLGTSHSYYSLDNYCYCYTATTIKTYSKW
Nucleotide sequence
Length: 2,623
>Harore.CG.MTP2014.S16.g00100.02.t
GTAAGTGGTTATGACGCAATTAGTAGTTAAAGTATGCTTGAGTGAGCACCGGAGCCTAAA
TTTGATTTCGCTCCATTGTCTGATTTTCAAAAAAGGATCATTCGGGAGAATTTGAACGGT
AATTTGTATGAAATTCCCTCGAAAACTTTTGATTTCCATATGTTATTATGTAATTGCTTC
CCTATGAGTTATTTTCTCACTTGAATTTACTTTCCTAGTCCTTAAAAGATAATTACCGAC
AATAGCGGATCGCTACACCGGCGGTGTCGCCGCAGATAAATATCCTTTCTAGACTCGACT
GAGACTCGAGACATTCAATCCCCATTGTTTAGTTATTTTCTTTTGTGTTACATAGGTTTT
GTTTCGGCGGAAACTTTTAACTTTCCGAAACCAGGTATCTGTTGATAATTCGAAATAGGT
TTAGTAAAGGGTAATTATTACAACGAATACAATGCCCCGCAGAAAAAATGACCCGAATAA
AATTGAAACTCCGGCCGTCAAAAAGTCGAAGAACGATAATATTGACTCGCTTGCAGAAAC
AGAAGACAGCGAAACCAGTGTGACACTTCCTCTACCAACAGAAGAAGGTGAGTTGGTGAT
TTGCGGTGGAGTTAACTGGAGTTTGAATGGACGGAAAAAACCAAGAAAGGGCGATGAAAA
ATATGCTAAAGTTGGAAGGAATCTATTCAAACCTCATCGCTACAAAGCATTGTCTGGCGT
CAAAATTACAAGAGTGATAAGTGGATGCCTTGCAAATCACAATTTGTTTATCACTAAGGA
AGGAAAAGTGTATTCTTGGGGTCGAAATGAATTTGGTCAGCTGGGCCACGGTGACACGGA
CAGGTACGACCTTCCAAAACAGATCGAGTCATTGAACCATTTGAAAATAGTTCACGCAGC
TGCTGGACGCAATCATACTTTGTGTCTCACGGAGTCTGGCAAAGTTTATTCCTTTGGTGA
AAATACGCAAGGCCAGTTGGGATTAGGTGTTCATGGATTCACGATTCCAAGCCCTACTCA
ACTTGCCTACCGTGGAAAACCAATCGTAGATATTTCGTGCGGTGCAGAGTTCAGCATGGT
TGTTGACACCGATGGATCGGTCCACTCATTCGGATGCCCCGAATATGGCCAACTCGGAAA
CAACACAGACGGAAAATACTTTGTATCTGGAAATAAGCTTGCGTACGACAGCGTCTTCAC
GGCATTTCGAATTCCCCTTTGGACAGAGAAGACGAGAAGTGGACAAGTGTTGCCTATCAC
AGATGTGAAAATCACCGGTGTAGCCTGCGGAGCCAACCATACTATTGCAGTCGATTCTAA
GAAAAGGATTTTCACTTGGGGTTTCGGTGGCTACGGAAGGCTGGGTCATTCGGAACAGAA
AGATGAACACACTCCCCGATTGGTCGAAGCGTTTAATCGTGAAATGAGGGGAGCTGTCAA
AATATATGCTGGTTCTTCATTCTCGTTGGCTGTAAATGAAACAGGCGTTACCATGTTCTG
GGGCTTACAAGGAAGCATCAGCAGCCGCGAAACTACCATGTATCCGAAGCCAGTTCAAGA
TCTACAAGGCTGGAACGTGAAAAGTATAGGATGTGGGCAAAGGCACATTGTGGTTGCGGC
TGATGAAAGTTTGATCGTGTGGGGAGTCGGTACTAGCAATGGTGAACTGGGTCTTGGTGA
ATCTCGCAAGAGCAGCGCCAATCCACAGATCATGAAAGCCATGGAAGGTCTCATGCCTCT
CGAGATATCCTGTGGTTTTGTGCATACATTGATCAAGGTTCGATGTAACAACGAGGAGGA
AACAGGCAAGCTTTCTTCCTTGCCTGAGTATGACCCATTTTTTGATGTTGTTCTTCACGT
TTCGTACTCTTCCACGAGTCTCTTGGTACTAGAACCGGTGAGCCTGCTTTATGCTATTAA
ATGGTACAGATCAAGTTACATTAACCTTATTAAAATCCATGCAGACTTAGGCACAAGTCA
TTCATATTATTCTTTAGATAATTACTGCTACTGTTATACTGCCACTACCATAAAAACCTA
CTCAAAATGGTGAGATTTGAAGAAAACACAGCACAGACCAAATATTCACAGACTAAGACC
AATGCTAACCAATTGTAAATAGATGTAGAACCTTGTCTAAGCCGTCACATTCCGCGATAT
AGCAATCGGGAGTGTTTTAGATTTTTATAGACGGGTTCCACTGTACTCGTAAGCTATTAG
CTCCCGAACATAACATGCACTTTTTATTGCTAATCACATTTCGAATTGTACATGTGGCAT
GACTGTGCAATCTTCGTGCCTTTATTCCTATAGAAGATTTTGACACAAAACAAGAATTTT
GCAGTGGTGTATTTATTTGAGATTTTCAATTATTCACCAATACAGCTCACATTACAGTTG
TTGCATGTGGTTAGCAAAAAATACAGTACACCATTTTAATGCCAATATATGTTCTTTTCA
TTGAATGTTATCCTTTGTTCTGATTCATTTTTTTCTTGAAAAAATTTGAATTGTGACTAT
TATCCAAATATTTGTTTTAGGAAATAATATGAAATTCTACATCAGGAAACCTAATTTGTT
CTATACCTCATTTTATAGAATAAAATGGAAAACGTTTGGAAGG
| Gene3D |
RCC1/BLIP-II (IPR009091) - T[5-244] 9.0E-52 - T[253-460] 3.7E-36 |
| SUPERFAMILY |
RCC1/BLIP-II (IPR009091) - T[41-446] 1.05E-82 |
| Pfam |
Reg_chr_condens (IPR000408) - T[110-159] 3.5E-17 - T[162-211] 6.5E-12 - T[214-287] 3.8E-8 - T[292-341] 7.6E-10 |
| ProSiteProfiles |
Reg_chr_condens (IPR000408) - T[111-162] 18.202 - T[163-214] 14.283 - T[215-290] 11.368 - T[291-344] 12.715 - T[392-445] 10.725 |
| PRINTS |
Reg_chr_condens (IPR000408) - T[112-128] 4.1E-15 - T[146-159] 4.1E-15 - T[165-181] 4.1E-15 - T[277-293] 4.1E-15 - T[293-307] 4.1E-15 |
| ProSitePatterns |
Reg_chr_condens (IPR000408) - T[149-159] . - T[277-287] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HERC2_HUMAN | 28.981 % | 134 | 5.69E-33 |
| HERC3_HUMAN | 28.125 % | 125 | 3.95E-30 |
| RCC2_HUMAN | 51.259 % | 470 | 6.07E-162 |