- Clone 'ma303m12' >
- Transcript 'Phfumi.CG.MTP2014.S9...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S16.g06507.01.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
S16 [338,764 / 348,768]
Amino acid sequence
Length: 1,782
>Harore.CG.MTP2014.S16.g06507.01.p
MTWFSRDVTEDKLEIWDSKKRRHKKRDAIKGPCNGRDCRNLGPCGFCVSEKGNRGFPGKQ
GDVGEHGPLGFSGPEGLMGPKGGKGYPGRHGPRGETGTRGKRGPPGYAGSHGLSGHPGEQ
GPVGFPGVDGCNGSAGDVGSRGSDGRPGRPGLTGVPGDFGQKGEPAIISDESMIKGERGE
DGPFGPRGRPGPAGPVGPMGPRGYEGPMGPPGPPGSKGMKGDLGQEGIGYQGERGEKGSV
GSTGGPPDFLEGKPPGFSGPTHGLPGRNGSRGENGEKGEPGEEGRQGPPGFRGMEGMTGE
KGVRGFAGARGPHGIQGTNGRDGFKGRKGEQGRPGGDGDQGFKGQRGEFGPDGPSGLPGL
EGLNGPRGPPGFPGSVGERGMRGEPGLQGLNGYPGSVGDRGLTGLPGLTGLPGPPGTGIK
GRDGLPGLSGNQGVNGRPGTPGPKGTRGEDGEQGLSIKGEKGKSGMDGLDGLMGLPGSRG
RAGQPGKLINQGGDVVGQAGEPGTRGLKGIKGLQGRDGLSGSAGSKGEKGGECDCSDAVG
ERGEPGKVGPPGFPGTNGRPGIPGREGERGEQGNSGRMGAPGLNGVIGRAGPEGLPGLKG
EPAELSDIIAEEGEPGLPGGQGPPGLDGLPGPTGLPGRPGVRGEKGEIGPYGKPGKMGAK
GSHGEIGNPGRPGNDGIGFPGPAGLKGGRGDNGFTGIIGQRGLKGKRGEIIMGDMVKGRK
GLSGLPGSPGIPGQKGDKGDSGIPGVNGFPGRDGSPGIVGPPGLPARLGKKGFSGPRGDK
GRAGIPGNDGLKGRPGRNANAGAPGAKGEPGISGIRGPPGVTGPKGFMGRQGLKGESGSD
GPLGLTGLLGNSGLPGQNGSAGATGPQGRQGPPGQKGVSAFEGRAGVKGSPGPQGLPGLI
GGPGPKGEIGPAGSPATGKFKGPKGYPGLPGQPGQKGLPGDDGPAGGTGARGPPGFPGQN
GMMGVRGITGQPGPPGSRGDGGVKGDIGFSGIPGLPGRTGLKGMTGDYGRFGEKGQKGQP
GPPIGPDNLSTVKGRKGTKGEPGSDGLVGSLGSVGRTGLPGMRGEAGLKGDHGEPGITGA
NGLPGLAGDNGLLGEDGERGPPGYIGPPGPHGEPGDVGLTGPMGEMGPPGSKGTQGLPGP
EGFPGNPGRDGYNGRDGRPGLKGTRGFPGSLGIPGMPGNKGGRGDRGTSGTSGAPGMKGN
DGIKGALGRDGLPGRPGFTGASGEKGARGDTGLNGIDGLNGLNGNKGEKGSPGRSIVPGV
SGIIGMQGFTGIKGDAGPPGDQGRDGMPGEPGMRGLPGLQGRQGETGLIGLAGVPGEKGE
LGLDGKEGIPGPPGPPGLEGLQGAVGRQGMKGSRGMVGEDGGYGEDGLPGEFGERGPQGL
PGLLGNKGNKGAPGLQGFLGILGGKGEQGLPGQTGRPGYPGIRGDRGLKGEPGKSIEPTY
LPPGPKGEEGHRGLPGLPGTIGPHGPKGIHGFHGEPGINGVDGLPGIPGPRGEKGSYGPA
GLTGPRGFRGIDGSKGSKGPSGVAGKIRPPGHLLVRHSQTVDVPECPTGMHKLWEGYSLL
YLEGSEKAHNQDLGSTGSCLRRFSTMPFLYCNINNVCNYANRNDKSYWLSTTAAIPMMPV
EMEGVKEHISRCSVCEARSVAMAIHSQTTDIPDCPRGWSGLWFGYSFVMHTAAGAQGGGQ
SLSSPGSCLEDFQTSPFIECNGAVGHCFYYNNQYSFWLTTIPADKLFESQKKETLKAGNL
RTRVGSLSKVASCFHHVKQPSNKIFKPPSSVICHLSEHNYCR
Nucleotide sequence
Length: 5,349
>Harore.CG.MTP2014.S16.g06507.01.t
ATGACCTGGTTTTCACGTGACGTCACAGAAGATAAGTTAGAAATATGGGATAGCAAAAAG
AGGCGACACAAAAAGAGGGATGCAATAAAAGGACCATGCAACGGAAGAGACTGCAGAAAT
CTTGGACCATGTGGATTCTGTGTTTCCGAAAAAGGAAATAGGGGTTTTCCGGGAAAACAA
GGCGACGTAGGAGAACACGGCCCACTCGGATTTTCTGGACCAGAGGGATTAATGGGCCCG
AAAGGGGGGAAAGGCTATCCCGGAAGACACGGACCTCGTGGAGAAACCGGTACAAGGGGT
AAAAGAGGGCCACCGGGATATGCAGGATCACACGGGCTATCGGGGCATCCCGGAGAGCAA
GGACCCGTCGGCTTTCCTGGAGTGGATGGTTGCAACGGCTCAGCTGGAGATGTTGGGTCA
AGAGGATCCGACGGCCGGCCAGGCCGACCTGGTTTGACGGGAGTTCCTGGTGACTTTGGG
CAAAAAGGAGAACCAGCAATTATCAGTGACGAATCAATGATAAAAGGTGAGCGAGGTGAA
GATGGCCCCTTTGGTCCAAGAGGAAGACCAGGACCCGCAGGGCCTGTTGGACCTATGGGT
CCAAGAGGGTATGAAGGACCTATGGGCCCTCCGGGTCCACCTGGATCTAAGGGAATGAAA
GGCGATCTTGGACAAGAGGGTATAGGTTACCAGGGAGAGAGAGGCGAGAAAGGAAGTGTT
GGATCTACCGGAGGACCTCCTGATTTCTTAGAAGGAAAACCGCCAGGATTTTCTGGACCA
ACACACGGCTTACCTGGTCGAAATGGAAGCAGGGGTGAAAATGGTGAAAAAGGCGAGCCT
GGAGAAGAAGGTCGGCAAGGGCCTCCTGGATTCCGGGGAATGGAAGGAATGACAGGTGAA
AAAGGTGTCCGTGGATTTGCAGGCGCCCGTGGGCCACATGGTATCCAGGGCACGAATGGC
CGAGATGGTTTCAAAGGACGAAAAGGAGAGCAAGGTCGACCTGGAGGAGATGGAGATCAG
GGATTCAAGGGACAAAGGGGAGAATTTGGACCAGATGGGCCGTCGGGACTTCCAGGACTT
GAGGGTCTTAATGGTCCCAGAGGTCCTCCTGGCTTTCCAGGTTCTGTAGGTGAAAGAGGT
ATGAGAGGAGAACCTGGACTACAAGGACTTAATGGATATCCTGGATCAGTCGGAGACAGA
GGTCTTACTGGACTACCTGGTCTCACTGGATTACCCGGTCCTCCTGGTACCGGAATAAAA
GGGAGAGACGGTCTTCCAGGTCTTAGTGGCAATCAAGGTGTCAATGGAAGACCAGGTACC
CCAGGTCCAAAAGGGACTCGTGGAGAAGATGGTGAGCAGGGGCTTTCAATTAAAGGAGAA
AAGGGAAAAAGTGGCATGGATGGATTAGATGGATTGATGGGATTACCGGGATCTAGAGGA
AGGGCTGGACAACCTGGCAAACTTATTAATCAGGGAGGAGATGTAGTTGGTCAGGCTGGG
GAACCCGGCACACGAGGGTTAAAGGGAATCAAAGGCTTGCAAGGGCGCGATGGATTAAGT
GGATCAGCAGGATCAAAAGGTGAAAAAGGTGGAGAATGTGACTGCAGTGATGCTGTTGGG
GAAAGAGGCGAACCAGGGAAAGTTGGTCCACCTGGCTTTCCTGGGACAAATGGTCGGCCA
GGAATACCTGGACGAGAAGGAGAACGGGGAGAACAGGGTAACTCTGGTCGAATGGGTGCT
CCAGGGCTCAATGGTGTAATCGGACGCGCGGGACCTGAAGGGCTTCCTGGACTAAAAGGT
GAGCCAGCAGAACTAAGTGATATAATTGCCGAGGAAGGGGAGCCTGGTCTTCCCGGAGGT
CAGGGTCCCCCTGGCTTGGATGGACTACCAGGTCCTACAGGACTACCAGGACGGCCTGGA
GTGAGAGGAGAGAAGGGGGAAATAGGTCCTTACGGTAAACCTGGTAAAATGGGAGCTAAG
GGATCTCACGGTGAAATAGGAAATCCTGGAAGACCTGGGAATGACGGGATTGGATTTCCT
GGTCCTGCTGGTTTGAAAGGAGGGCGAGGCGACAACGGTTTTACTGGCATAATAGGTCAA
AGAGGCCTGAAGGGTAAACGAGGTGAAATTATTATGGGCGATATGGTAAAAGGGAGAAAG
GGTCTATCGGGACTTCCAGGGTCTCCTGGTATACCTGGGCAAAAGGGAGATAAAGGAGAT
TCGGGAATTCCAGGTGTGAATGGCTTCCCAGGGAGAGACGGTTCCCCTGGTATTGTCGGG
CCACCAGGTTTGCCCGCAAGACTAGGAAAAAAAGGGTTCTCCGGTCCCCGTGGAGATAAG
GGTCGAGCTGGTATTCCCGGAAACGATGGACTAAAAGGACGCCCAGGAAGAAATGCGAAT
GCAGGAGCACCTGGAGCCAAAGGAGAGCCAGGAATATCAGGAATCCGTGGACCTCCTGGT
GTTACTGGTCCTAAAGGATTTATGGGGAGACAAGGATTAAAAGGGGAATCTGGATCAGAT
GGGCCTCTTGGTTTAACTGGATTGCTTGGTAATTCTGGTTTACCTGGACAGAATGGATCA
GCAGGTGCAACAGGTCCTCAAGGAAGGCAAGGGCCACCAGGTCAAAAAGGAGTATCAGCA
TTTGAGGGCAGAGCGGGAGTAAAAGGTTCACCAGGACCGCAAGGTTTACCAGGATTGATA
GGAGGACCAGGACCAAAAGGAGAAATAGGACCAGCAGGTTCTCCTGCTACTGGAAAATTC
AAGGGCCCTAAAGGATATCCTGGATTACCTGGTCAGCCAGGACAAAAAGGGTTACCTGGA
GATGATGGCCCTGCTGGTGGTACCGGTGCACGGGGACCTCCCGGTTTCCCCGGTCAGAAC
GGAATGATGGGAGTGAGAGGAATTACAGGTCAGCCAGGTCCTCCAGGGAGCAGAGGCGAT
GGTGGTGTTAAAGGTGATATAGGATTCTCAGGAATTCCTGGTCTGCCAGGGCGAACCGGA
CTGAAAGGGATGACAGGGGATTACGGAAGATTTGGAGAGAAAGGTCAAAAGGGTCAGCCT
GGTCCACCTATTGGTCCAGATAATTTAAGTACGGTTAAAGGAAGAAAGGGCACTAAAGGA
GAGCCCGGCTCTGATGGATTAGTAGGATCACTCGGTTCTGTAGGAAGAACTGGTCTTCCC
GGTATGAGAGGAGAAGCCGGTCTCAAAGGTGATCATGGGGAGCCAGGTATAACTGGTGCA
AATGGACTGCCAGGTTTAGCAGGAGACAATGGTCTCCTTGGTGAAGATGGTGAACGCGGG
CCACCTGGTTACATAGGCCCCCCAGGACCGCACGGAGAACCAGGAGATGTAGGACTGACT
GGACCAATGGGTGAAATGGGACCACCAGGATCGAAAGGAACACAAGGCCTTCCTGGGCCC
GAAGGTTTTCCTGGAAATCCTGGCCGAGATGGATATAATGGGAGAGATGGTAGACCGGGT
TTGAAAGGCACTAGAGGATTTCCTGGTTCACTTGGGATACCTGGTATGCCAGGTAACAAA
GGAGGAAGAGGAGATAGAGGGACTTCAGGCACATCAGGTGCACCTGGAATGAAGGGTAAT
GATGGTATCAAAGGTGCACTAGGTAGAGATGGTTTACCGGGAAGACCTGGATTTACTGGA
GCATCAGGAGAAAAAGGAGCCCGAGGTGATACTGGACTGAATGGCATTGATGGACTAAAT
GGTTTGAATGGTAATAAAGGGGAAAAGGGAAGCCCAGGTCGATCGATAGTGCCGGGTGTT
TCAGGGATAATTGGCATGCAAGGATTTACGGGAATCAAAGGAGATGCTGGCCCGCCTGGT
GATCAGGGACGTGACGGCATGCCTGGTGAGCCAGGAATGCGAGGATTGCCAGGTCTTCAG
GGTAGACAAGGCGAAACAGGGTTAATAGGACTAGCTGGGGTCCCTGGAGAGAAAGGAGAG
CTAGGATTGGATGGAAAAGAAGGAATTCCCGGACCACCAGGACCACCTGGACTGGAAGGC
CTACAGGGTGCCGTAGGTAGGCAAGGGATGAAAGGAAGCAGGGGCATGGTAGGAGAAGAT
GGCGGGTATGGAGAAGATGGTTTACCTGGAGAGTTTGGAGAAAGAGGACCACAAGGACTT
CCTGGATTATTGGGAAACAAGGGAAACAAGGGAGCTCCTGGATTACAAGGATTCCTAGGC
ATTCTTGGAGGTAAAGGAGAACAAGGACTACCCGGACAGACTGGAAGACCTGGTTATCCC
GGCATACGGGGTGATAGAGGACTAAAAGGTGAACCTGGAAAATCCATTGAACCAACATAT
CTACCACCTGGGCCAAAAGGGGAAGAAGGGCACAGAGGTCTTCCTGGTTTACCTGGGACG
ATTGGGCCACACGGACCAAAAGGAATCCATGGATTTCATGGGGAACCAGGAATAAATGGA
GTTGACGGACTACCTGGAATTCCTGGACCACGTGGAGAGAAAGGGAGTTATGGTCCAGCT
GGTCTCACAGGCCCAAGAGGTTTTAGAGGAATTGATGGCTCAAAAGGCAGTAAAGGACCA
TCAGGTGTAGCAGGTAAAATTCGTCCACCGGGTCACTTGCTTGTTCGACACAGTCAAACA
GTTGATGTGCCAGAATGTCCAACAGGAATGCATAAATTGTGGGAAGGTTACAGCTTGCTC
TATCTGGAAGGAAGTGAAAAGGCTCACAATCAAGATTTAGGTTCCACTGGCTCCTGTTTG
AGGAGATTCAGCACAATGCCATTCCTGTACTGCAACATTAACAATGTCTGCAACTATGCA
AATAGAAATGATAAGTCGTACTGGCTTTCGACCACAGCTGCAATACCTATGATGCCTGTT
GAGATGGAAGGAGTTAAAGAACATATCAGTAGATGCTCTGTCTGTGAAGCTAGATCAGTG
GCAATGGCGATCCACAGTCAGACAACCGACATTCCAGACTGTCCAAGAGGATGGTCAGGT
TTATGGTTCGGTTACAGTTTTGTCATGCATACAGCAGCAGGTGCACAAGGTGGAGGACAA
TCTTTATCCAGCCCCGGATCTTGCCTAGAAGATTTTCAGACATCCCCTTTCATTGAGTGC
AATGGGGCAGTGGGACACTGTTTCTATTACAACAATCAGTACAGTTTTTGGCTTACGACG
ATACCAGCAGACAAACTTTTCGAGTCACAGAAAAAGGAGACTTTAAAAGCAGGCAATCTG
AGAACAAGAGTGGGGAGTCTTTCAAAAGTTGCTTCGTGTTTCCATCATGTGAAGCAACCA
AGCAACAAAATATTTAAACCGCCATCATCTGTGATCTGTCATTTGTCTGAGCATAACTAT
TGCAGATAA
| Pfam |
Collagen (IPR008160) - T[52-109] 6.1E-7 - T[85-137] 1.3E-6 - T[109-165] 1.3E-8 - T[176-227] 2.2E-7 - T[543-601] 5.1E-9 - T[613-671] 1.7E-7 - T[718-771] 6.6E-8 - T[853-911] 6.7E-7 - T[921-977] 1.0E-8 - T[964-1022] 1.5E-7 - T[1037-1091] 1.5E-8 - T[1373-1432] 5.7E-8 - T[1443-1495] 1.3E-8 - T[1474-1531] 1.3E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1529-1757] 5.8E-104 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1531-1760] 103.113 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1531-1638] 5.4E-62 - T[1639-1756] 7.1E-50 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1533-1639] 6.12E-44 - T[1640-1744] 8.95E-36 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1533-1636] 4.2E-37 - T[1641-1745] 9.8E-36 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 45.19 % | 572 | 7.96E-174 |
| CO4A1_HUMAN | 38.993 % | 555 | 6.03E-168 |
| CO4A6_HUMAN | 41.133 % | 694 | 0 |