- Transcript 'KH2012:KH.C5.229.v1....' >
- Clone 'csma080b19' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S16.g06507.02.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
S16 [338,764 / 342,462]
Amino acid sequence
Length: 672
>Harore.CG.MTP2014.S16.g06507.02.p
MTWFSRDVTEDKLEIWDSKKRRHKKRDAIKGPCNGRDCRNLGPCGFCVSEKGNRGFPGKQ
GDVGEHGPLGFSGPEGLMGPKGGKGYPGRHGPRGETGTRGKRGPPGYAGSHGLSGHPGEQ
GPVGFPGVDGCNGSAGDVGSRGSDGRPGRPGLTGVPGDFGQKGEPAIISDESMIKGERGE
DGPFGPRGRPGPAGPVGPMGPRGYEGPMGPPGPPGSKGMKGDLGQEGIGYQGERGEKGSV
GSTGGPPDFLEGKPPGFSGPTHGLPGRNGSRGENGEKGEPGEEGRQGPPGFRGMEGMTGE
KGVRGFAGARGPHGIQGTNGRDGFKGRKGEQGRPGGDGDQGFKGQRGEFGPDGPSGLPGL
EGLNGPRGPPGFPGSVGERGMRGEPGLQGLNGYPGSVGDRGLTGLPGLTGLPGPPGTGIK
GRDGLPGLSGNQGVNGRPGTPGPKGTRGEDGEQGLSIKGEKGKSGMDGLDGLMGLPGSRG
RAGQPGKLINQGGDVVGQAGEPGTRGLKGIKGLQGRDGLSGSAGSKGEKGGECDCSDAVG
ERGEPGKVGPPGFPGTNGRPGIPGREGERGEQGNSGRMGAPGLNGVIGRAGPEGLPGLKG
EPAELSDIIAEEGEPGLPGGQGPPGLDGLPGPTGLPGRPGVRGEKVSQDFHLFKLPIPNN
SLYLTGGNRSLR
Nucleotide sequence
Length: 2,019
>Harore.CG.MTP2014.S16.g06507.02.t
ATGACCTGGTTTTCACGTGACGTCACAGAAGATAAGTTAGAAATATGGGATAGCAAAAAG
AGGCGACACAAAAAGAGGGATGCAATAAAAGGACCATGCAACGGAAGAGACTGCAGAAAT
CTTGGACCATGTGGATTCTGTGTTTCCGAAAAAGGAAATAGGGGTTTTCCGGGAAAACAA
GGCGACGTAGGAGAACACGGCCCACTCGGATTTTCTGGACCAGAGGGATTAATGGGCCCG
AAAGGGGGGAAAGGCTATCCCGGAAGACACGGACCTCGTGGAGAAACCGGTACAAGGGGT
AAAAGAGGGCCACCGGGATATGCAGGATCACACGGGCTATCGGGGCATCCCGGAGAGCAA
GGACCCGTCGGCTTTCCTGGAGTGGATGGTTGCAACGGCTCAGCTGGAGATGTTGGGTCA
AGAGGATCCGACGGCCGGCCAGGCCGACCTGGTTTGACGGGAGTTCCTGGTGACTTTGGG
CAAAAAGGAGAACCAGCAATTATCAGTGACGAATCAATGATAAAAGGTGAGCGAGGTGAA
GATGGCCCCTTTGGTCCAAGAGGAAGACCAGGACCCGCAGGGCCTGTTGGACCTATGGGT
CCAAGAGGGTATGAAGGACCTATGGGCCCTCCGGGTCCACCTGGATCTAAGGGAATGAAA
GGCGATCTTGGACAAGAGGGTATAGGTTACCAGGGAGAGAGAGGCGAGAAAGGAAGTGTT
GGATCTACCGGAGGACCTCCTGATTTCTTAGAAGGAAAACCGCCAGGATTTTCTGGACCA
ACACACGGCTTACCTGGTCGAAATGGAAGCAGGGGTGAAAATGGTGAAAAAGGCGAGCCT
GGAGAAGAAGGTCGGCAAGGGCCTCCTGGATTCCGGGGAATGGAAGGAATGACAGGTGAA
AAAGGTGTCCGTGGATTTGCAGGCGCCCGTGGGCCACATGGTATCCAGGGCACGAATGGC
CGAGATGGTTTCAAAGGACGAAAAGGAGAGCAAGGTCGACCTGGAGGAGATGGAGATCAG
GGATTCAAGGGACAAAGGGGAGAATTTGGACCAGATGGGCCGTCGGGACTTCCAGGACTT
GAGGGTCTTAATGGTCCCAGAGGTCCTCCTGGCTTTCCAGGTTCTGTAGGTGAAAGAGGT
ATGAGAGGAGAACCTGGACTACAAGGACTTAATGGATATCCTGGATCAGTCGGAGACAGA
GGTCTTACTGGACTACCTGGTCTCACTGGATTACCCGGTCCTCCTGGTACCGGAATAAAA
GGGAGAGACGGTCTTCCAGGTCTTAGTGGCAATCAAGGTGTCAATGGAAGACCAGGTACC
CCAGGTCCAAAAGGGACTCGTGGAGAAGATGGTGAGCAGGGGCTTTCAATTAAAGGAGAA
AAGGGAAAAAGTGGCATGGATGGATTAGATGGATTGATGGGATTACCGGGATCTAGAGGA
AGGGCTGGACAACCTGGCAAACTTATTAATCAGGGAGGAGATGTAGTTGGTCAGGCTGGG
GAACCCGGCACACGAGGGTTAAAGGGAATCAAAGGCTTGCAAGGGCGCGATGGATTAAGT
GGATCAGCAGGATCAAAAGGTGAAAAAGGTGGAGAATGTGACTGCAGTGATGCTGTTGGG
GAAAGAGGCGAACCAGGGAAAGTTGGTCCACCTGGCTTTCCTGGGACAAATGGTCGGCCA
GGAATACCTGGACGAGAAGGAGAACGGGGAGAACAGGGTAACTCTGGTCGAATGGGTGCT
CCAGGGCTCAATGGTGTAATCGGACGCGCGGGACCTGAAGGGCTTCCTGGACTAAAAGGT
GAGCCAGCAGAACTAAGTGATATAATTGCCGAGGAAGGGGAGCCTGGTCTTCCCGGAGGT
CAGGGTCCCCCTGGCTTGGATGGACTACCAGGTCCTACAGGACTACCAGGACGGCCTGGA
GTGAGAGGAGAGAAGGTGAGTCAAGATTTTCATCTCTTCAAGTTACCGATACCTAACAAT
TCTTTATATTTGACAGGGGGAAATAGGTCCTTACGGTAA
| Pfam |
Collagen (IPR008160) - T[109-165] 4.3E-9 - T[176-227] 7.0E-8 - T[262-318] 2.1E-8 - T[543-601] 1.7E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 39.695 % | 189 | 3.17E-50 |
| CO4A2_HUMAN | 35.829 % | 166 | 8.02E-43 |
| CO4A6_HUMAN | 39.271 % | 184 | 1.15E-48 |