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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S9...' > 
  2. Transcript 'Harore.CG.MTP2014.S2...' > 
  3. Clone 'cima869841' > 
  4. Transcript 'Haaura.CG.MTP2014.S1...' > 
  5. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S172.g10694.01.t

Possible name(s)

CADM1; CADM2; LRIG3

Gene model

Harore.CG.MTP2014.S172.g10694

Location

S172 [111,504 / 117,334]

Sequences

Amino acid sequence

Length: 346

>Harore.CG.MTP2014.S172.g10694.01.p
MRKLVQLRILWASGVLTVKLEGGTVTGLSGGDVTLVCTIIDSPKNTTDMIYTWNSQTDLL
FFNKVKVQALTRMSAEFDVNSMEMTIHSLELSDEGKYICKLQGLEDGAISDAVDLIVNQL
PQSVSVENIDVKPMAGTVATIAKCYSNASKPEVTMWFTDDGGNKIDDNMASIDTVKDEDT
QLSYSVLSLQRVFYKLDNRRVYYCNVEHTASKDTEIRATAPVNVQYLPTAYLSVKPDDLI
TLEEGTSFSVTCQPDGNPTPTVTWTFTANDKVNATDPTKFPENFVISSDGSTIKSDNVEL
TSNDLTNNGTFTCSVSNGLGSEVVLAFDLGVYGKIFSLFCYSEVMS

Nucleotide sequence

Length: 1,041

>Harore.CG.MTP2014.S172.g10694.01.t
ATGAGGAAATTGGTGCAACTCAGAATTCTATGGGCATCGGGTGTATTGACTGTCAAATTG
GAAGGAGGCACTGTTACAGGACTCAGTGGCGGAGATGTAACCCTAGTATGTACTATCATC
GACTCGCCTAAAAATACTACTGACATGATCTATACCTGGAACAGTCAAACCGATTTGCTT
TTCTTCAACAAGGTGAAGGTGCAAGCATTGACTAGGATGAGCGCCGAATTTGATGTCAAT
AGCATGGAAATGACCATCCATTCCTTGGAACTCTCGGATGAAGGCAAATACATTTGCAAA
TTGCAGGGCTTAGAAGACGGTGCTATATCTGATGCTGTGGACCTCATTGTTAACCAGCTA
CCACAGTCTGTGTCTGTTGAAAATATAGATGTGAAACCCATGGCTGGTACTGTGGCAACC
ATTGCAAAATGCTATTCCAATGCTTCAAAACCTGAAGTCACTATGTGGTTCACCGATGAC
GGTGGGAACAAAATTGATGACAACATGGCCTCCATTGATACGGTGAAGGATGAAGACACA
CAACTGTCCTACTCTGTTCTATCGTTGCAAAGAGTTTTCTACAAGCTTGATAACAGACGT
GTGTACTACTGTAACGTGGAACATACTGCCAGCAAAGATACAGAGATAAGAGCGACAGCT
CCAGTAAATGTTCAGTATCTTCCAACTGCATACTTAAGTGTAAAACCAGACGATTTGATA
ACACTAGAAGAAGGAACCTCGTTCAGCGTGACCTGCCAGCCTGACGGCAACCCTACTCCA
ACAGTTACCTGGACTTTCACAGCAAACGATAAAGTGAACGCCACTGACCCGACTAAATTT
CCAGAGAATTTTGTCATTTCAAGTGACGGAAGTACGATAAAAAGTGACAATGTTGAACTT
ACAAGCAACGATTTGACAAACAACGGGACATTCACCTGCTCTGTGTCCAACGGACTTGGA
TCAGAAGTCGTTTTGGCTTTTGATCTTGGAGTGTATGGTAAGATATTCTCCCTCTTTTGT
TATTCTGAAGTGATGTCTTGA

InterProScan

Gene3D
Ig-like_fold (IPR013783) - T[20-123] 6.6E-10 - T[124-230] 3.3E-7 - T[231-327] 5.6E-13
SUPERFAMILY
Ig-like_dom_sf (IPR036179) - T[21-100] 3.29E-10 - T[219-322] 1.87E-12
SMART
Ig_sub (IPR003599) - T[22-118] 5.8E-6 - T[237-332] 2.3
Pfam
Ig_V-set (IPR013106) - T[24-103] 5.1E-6
SMART
Ig_sub2 (IPR003598) - T[28-106] 1.3 - T[243-320] 4.4E-7
ProSiteProfiles
Ig-like_dom (IPR007110) - T[30-110] 8.357 - T[121-223] 7.722 - T[228-326] 11.206

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value