Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Cisavi.CG.ENS81.R1.1...'
  2. EST 'FK176909.1'
  3. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S1752.g03001.01.t

Possible name(s)

DST; MACF1; SYNE1

Location

S1752 [0 / 3,195]

Sequences

Amino acid sequence

Length: 325

>Harore.CG.MTP2014.S1752.g03001.01.p
AQLKLEDFTSQQSMLSKYVNELYDWINHKEETMNNMLKNKQPEHLKKAREIHSELSGQQD
NVESAKEHLNNLCRKYQASELESLQSNVAKLTTAYENVFKLSADVIKSLEGNIDGEFNAS
VKDFYSWYIAGVEVINDCADTAGDIPALEERLQKLQNYADKIEDGQSKVNAAVEVGARCV
KDLPRSADDVDQQLSSLKEDWHKFLGQLEDQRLNLETSLSGLRDLEENRKELAGWLKTIE
KQLRDDEEVDGGLDEKVAQFKNIQALNKDLSSKSGQIETLMQQAYELVESDSTQSNSARK
SHQLISVYHGICKKAKVSVTQWCIV

Nucleotide sequence

Length: 978

>Harore.CG.MTP2014.S1752.g03001.01.t
GCTCAGTTGAAACTTGAGGACTTCACGTCTCAGCAGTCCATGTTGTCTAAATATGTGAAT
GAACTGTACGACTGGATAAATCACAAAGAAGAGACGATGAACAACATGTTGAAGAATAAA
CAGCCGGAACATTTGAAAAAAGCCAGGGAGATCCATTCTGAGCTTTCTGGTCAACAAGAC
AATGTTGAATCAGCGAAAGAACATTTAAACAATCTCTGCAGAAAGTATCAAGCTTCGGAA
CTTGAATCTTTGCAATCGAATGTTGCCAAACTGACGACTGCCTATGAGAATGTCTTCAAA
TTATCTGCTGATGTTATCAAAAGTTTGGAAGGAAACATTGACGGTGAATTCAATGCATCA
GTGAAAGATTTTTACAGTTGGTACATAGCTGGTGTTGAAGTTATCAATGACTGTGCTGAT
ACTGCAGGTGATATACCAGCACTGGAAGAAAGATTGCAAAAATTGCAAAACTATGCTGAC
AAGATTGAAGATGGACAATCTAAAGTCAATGCAGCTGTTGAAGTAGGTGCTCGATGTGTG
AAAGATCTTCCACGGAGTGCAGATGACGTCGATCAGCAACTTAGCAGCTTGAAGGAAGAT
TGGCACAAGTTCCTTGGACAACTCGAGGATCAAAGACTGAACCTCGAGACCTCACTCTCC
GGCCTCCGAGACCTGGAAGAAAATCGCAAAGAGCTTGCAGGTTGGCTCAAGACAATCGAG
AAGCAGCTTCGGGACGATGAAGAAGTTGACGGTGGACTGGATGAAAAAGTTGCTCAATTT
AAAAATATCCAGGCTCTCAATAAAGATTTATCAAGCAAATCTGGTCAAATTGAAACTCTG
ATGCAGCAAGCATACGAACTTGTAGAAAGCGATTCAACCCAGAGCAACAGTGCAAGAAAA
TCACATCAACTTATATCTGTTTATCATGGCATTTGTAAGAAGGCAAAGGTTAGTGTTACA
CAGTGGTGTATTGTTTAA

InterProScan

PANTHER
SYNE1 (IPR030265) - T[2-319] 1.4E-59
SMART
Spectrin/alpha-actinin (IPR018159) - T[13-110] 0.47 - T[115-216] 6.4E-6
Pfam
Spectrin_repeat (IPR002017) - T[18-110] 2.3E-5 - T[116-216] 1.0E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SYNE1_HUMAN 27.937 % 144 5.28E-38