- Clone 'cign057e09' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S176.g04187.02.t
Possible name(s)
AL136295.5; RNF217; RNF31
Gene model
Location
S176 [132,102 / 147,017]
Amino acid sequence
Length: 1,558
>Harore.CG.MTP2014.S176.g04187.02.p
MVDVYPTPQSKRARDVLESRVRQGSAKGTNARYLVQDILQFNLPIAARYKHLDVIRILQD
NCSSSGPGLDALIHALSMLERYGKNLVRSERPPQWRVVRLSNSIFKKEVDILKGARDILR
LLGYTKKVEDGLAYVDECVVPDVPAVASVTADILLLRQELTMLTKGEHKQQRDFLSYIPY
EELSRIQGFYAQQQMQKSTPSETPAPEPQLPLESQSYPAFGEATSNIQIPKCIITATKNI
FLFQKLPPSYEQALNGVGPNPLHTVGQSTQQLFHPSSGGLLMPSSTVQNQMPVAAPVVQA
AEVSEDELCHICGQIKSTVMCQKCDQQYCAPCDQIWHNNPRRKCHKRVSIPLQNGINFGS
EFNERSLLNNHQEYLPSNSSLPQQSSSGGYYNISGLAETRQPGGQSTQQLFHPSSGGLLM
PSSTVQNQMPVAAPVVQAAEVSEDELCHICGQIKSTVMCQKCDQQYCAPCDQIWHNNPRR
KCHKRVSIPLQNGINFGSEFNERSLLNNHQEYLPSNSSLPQQSSSGGYYNISGLAETRQP
GEEGNQGSQPTVSGARLPPNPNSRSTSINDNENEWTRKVNRMATELMDIADPDAQKSKLF
SCLDDINKEKDKYIGGIQQLQSKGFEKPSLVAHFEERLGMLANLEEQLKALVSYTEPPAE
TAQSVSSLAQNEDNPEESWSFKSVKSGPEFNSNLVASSMMNLGTGDFQPYAQKETVPLTT
AVHLNGSTLKPNQPLQEADPPITIANLIDFSTPPEAVSVPSVTSTSISYTQDLVGLDLQK
TKPSKAMSSLEDLDDITTAKKPLGEVENTSNFENFTSPFSSMHEAGSYSCPTSPQSTSVS
LRSPNNMPSTSLKRLNSNQQMGENRPTKVYRANPSSLSNVSEVNSEITNRLENMNIETRN
AETIPMVVGQLSNFSTFFEDASPYLQNRIEEEPLSLSKSILQTLSHEDLQKRIRKEENLL
QTTQFIDWIRMGQSERYLPEHVQIAVAELDNEGNLARILPNAWLRKKWSGNLSTFRQYVK
ENCGFVITMTRAEECLLAENNNFPEALELIKEDINEQLHYNSGIYGKEAAQNALIKCGGD
EYRSTAILQKDEIKSFYLEVENGDLEDENEDDEEHLRNISQIKDEELRTHAHIAALDVSR
CVYMDTYNALTQVLPLDMRNMVGDVIEAVLSYPGDVENAIRYLDNECMICLDKFPRSKIT
CLPTCGDNECMYCVSCLERHLSICITDKNIRDIICPVCSNPEYNSDEETITNFFNHIDAI
LRQMKDKRINELFQQKLRDLTLMRMPNFRWCSHCSGGFQFEIEIENNLKMICPFCQKGTC
YSCKKQWEPQHEGISCEQFQLWKESNDPEFQAAGLARHLKENGIDCPDCNFRYALAKGGC
MHFKCTQCSHEFCSGCKSPFKHGRACNIFPSCISKGLHAHHPRDCLFYLRDSDPEMFQKL
LDKYNVQYNSEGPNQGKCQVVEQKETSTGMKDDFCGRELKRGQAGLCKLHYNEYLVNLVI
VNGLDPAEVFSIDQLKPCLMREDKPIPKRLDNETDENYAKRLLKEVKKLPLIKRQRRN
Nucleotide sequence
Length: 4,976
>Harore.CG.MTP2014.S176.g04187.02.t
AGAATGTATAACAAAGATCATGCTATGTAAATAGTATATTTCCAAGCATTTCTGATAATA
AAAAAACAAGTTAAACATGGTTGATGTTTATCCCACTCCCCAAAGTAAACGAGCAAGGGA
CGTACTCGAGTCGAGAGTAAGACAAGGCTCTGCTAAAGGTACTAATGCTCGCTATCTGGT
GCAAGATATACTTCAGTTTAACCTACCAATTGCTGCACGGTACAAGCACCTTGATGTCAT
TCGCATACTGCAAGATAACTGTTCCTCGAGTGGCCCGGGCTTGGATGCACTGATACACGC
TTTAAGCATGCTCGAACGCTACGGCAAAAATTTGGTACGCTCTGAAAGACCTCCGCAATG
GCGAGTTGTCAGATTGTCCAACAGCATATTTAAAAAAGAAGTCGATATTTTAAAGGGTGC
TAGAGATATACTTAGACTTCTTGGCTACACAAAAAAAGTTGAAGATGGTCTGGCCTACGT
AGACGAATGCGTTGTTCCAGATGTCCCTGCCGTTGCTTCTGTTACGGCGGACATACTGCT
CCTTCGCCAGGAATTAACGATGCTCACAAAAGGTGAACATAAACAGCAAAGGGACTTCTT
GTCCTACATTCCATATGAAGAACTGAGTCGTATTCAAGGGTTTTACGCACAACAACAAAT
GCAAAAAAGCACTCCCTCAGAAACTCCTGCACCGGAACCTCAATTGCCGTTAGAAAGTCA
AAGTTACCCTGCGTTCGGAGAAGCAACAAGCAACATTCAAATACCAAAATGCATTATCAC
AGCAACGAAAAATATTTTCCTTTTTCAGAAACTGCCACCATCTTATGAACAAGCACTGAA
TGGGGTGGGTCCGAATCCTCTGCATACAGTAGGTCAGAGCACACAACAGTTATTCCATCC
ATCAAGTGGGGGATTGTTGATGCCATCATCCACTGTCCAGAACCAAATGCCGGTAGCAGC
ACCTGTGGTTCAGGCCGCTGAAGTATCAGAAGACGAACTATGTCACATATGTGGTCAAAT
CAAGTCGACCGTCATGTGCCAAAAATGCGATCAGCAGTACTGCGCGCCGTGTGACCAGAT
ATGGCACAACAATCCGCGTCGCAAGTGTCACAAGAGAGTGTCTATTCCTTTGCAAAATGG
CATCAATTTCGGAAGTGAATTTAACGAGAGGAGCTTGCTCAATAATCATCAGGAATATTT
GCCCAGTAATAGTAGCCTCCCGCAGCAATCCAGCTCTGGAGGATATTATAATATATCTGG
TTTGGCAGAAACTCGACAGCCGGGAGGTCAGAGCACACAACAGTTATTCCATCCATCAAG
TGGGGGATTGTTGATGCCATCATCCACTGTCCAGAACCAAATGCCGGTAGCAGCACCTGT
GGTTCAGGCCGCTGAAGTATCAGAAGACGAACTATGTCACATATGTGGTCAAATCAAGTC
GACCGTCATGTGCCAAAAATGCGATCAGCAGTACTGCGCGCCGTGTGACCAGATATGGCA
CAACAATCCGCGTCGCAAGTGTCACAAGAGAGTGTCTATTCCTTTGCAAAATGGCATCAA
TTTCGGAAGTGAATTTAACGAGAGGAGCTTGCTCAATAATCATCAGGAATATTTGCCCAG
TAATAGTAGCCTCCCGCAGCAATCCAGCTCTGGAGGATATTATAATATATCTGGTTTGGC
AGAAACTCGACAGCCGGGAGAAGAAGGCAACCAAGGTTCTCAACCCACTGTGTCTGGTGC
CCGACTCCCACCAAATCCCAATAGCAGAAGCACTAGCATCAATGACAACGAGAACGAATG
GACACGAAAGGTCAATCGAATGGCCACGGAGCTAATGGACATTGCTGATCCTGATGCTCA
GAAATCTAAACTGTTTTCGTGTCTTGACGATATTAACAAAGAAAAGGATAAATACATTGG
TGGAATCCAACAGTTGCAGAGCAAGGGCTTTGAGAAACCTTCCCTTGTTGCTCATTTTGA
AGAAAGATTAGGAATGTTGGCAAACCTGGAGGAACAACTCAAAGCGTTGGTAAGCTATAC
TGAGCCGCCTGCAGAAACAGCGCAGTCCGTGTCAAGCTTGGCTCAAAATGAGGACAATCC
GGAGGAAAGTTGGTCGTTTAAGTCTGTTAAATCTGGTCCCGAATTCAATTCTAATCTCGT
AGCTTCCAGCATGATGAATTTAGGCACTGGCGACTTTCAACCCTATGCTCAAAAAGAGAC
CGTGCCATTGACAACAGCGGTGCACTTGAACGGATCTACTCTGAAACCTAACCAGCCCCT
GCAAGAAGCAGATCCTCCTATTACTATAGCCAACCTCATAGATTTTTCGACACCCCCTGA
GGCTGTATCGGTGCCGTCTGTTACTTCGACAAGTATTTCATACACGCAAGACCTAGTGGG
CTTGGATTTGCAGAAGACTAAACCTTCCAAGGCGATGTCTTCGTTGGAAGATCTTGACGA
CATCACAACTGCCAAAAAGCCTCTGGGCGAAGTTGAAAATACTTCGAACTTCGAGAATTT
CACAAGCCCATTCTCTTCAATGCATGAGGCTGGCAGTTATTCCTGCCCCACATCACCCCA
AAGTACCTCAGTATCTTTGAGGAGTCCTAACAACATGCCGTCTACGAGCTTAAAAAGATT
GAATTCTAACCAGCAAATGGGAGAAAATCGTCCAACTAAAGTTTATAGGGCCAATCCTTC
TTCTCTCAGCAACGTCAGCGAGGTTAATTCTGAAATAACTAACAGGCTTGAAAACATGAA
CATCGAGACAAGAAACGCCGAAACAATACCGATGGTTGTCGGTCAACTAAGTAACTTTTC
GACGTTTTTCGAAGACGCTTCACCCTATCTTCAAAACAGAATCGAAGAGGAACCTTTGAG
TCTCTCGAAAAGCATTTTGCAGACGCTTTCGCATGAAGATTTGCAGAAGCGGATCAGGAA
GGAAGAGAACCTCCTACAGACCACACAGTTTATTGATTGGATCAGAATGGGGCAAAGCGA
AAGGTATTTACCTGAACATGTACAAATCGCTGTGGCAGAGCTGGATAATGAAGGTAACCT
CGCTAGAATTCTACCGAACGCTTGGCTACGGAAGAAATGGAGCGGAAACTTGTCAACTTT
CAGACAATATGTAAAGGAGAACTGCGGTTTTGTGATAACAATGACTCGTGCTGAAGAATG
CCTGCTGGCAGAAAATAACAATTTCCCTGAAGCACTAGAACTGATTAAAGAAGATATAAA
TGAACAGTTACATTACAACTCTGGAATATACGGAAAGGAAGCTGCCCAAAATGCTTTGAT
TAAATGTGGTGGTGATGAGTATCGTTCTACCGCCATACTCCAGAAAGATGAAATTAAATC
ATTTTATCTTGAAGTCGAGAATGGTGATCTTGAAGATGAAAACGAAGACGATGAAGAACA
TTTACGAAATATATCACAGATAAAAGATGAAGAACTCAGAACTCATGCTCACATAGCAGC
CTTAGATGTGAGTCGTTGCGTCTATATGGATACATACAACGCCTTAACGCAAGTGTTACC
CCTCGACATGCGGAATATGGTTGGTGATGTGATCGAGGCCGTGCTGAGTTATCCCGGGGA
CGTGGAAAATGCAATAAGATATCTGGACAATGAATGCATGATTTGCTTAGATAAATTTCC
TCGCAGTAAGATAACATGTTTACCCACATGTGGCGACAATGAATGCATGTACTGCGTGTC
TTGCTTAGAGCGCCATCTCAGCATCTGTATCACTGATAAAAACATCCGAGATATCATTTG
TCCGGTCTGCTCTAATCCTGAATACAACAGCGACGAAGAAACAATAACAAATTTTTTCAA
TCATATTGATGCTATTCTTCGACAAATGAAAGACAAGAGAATTAATGAATTATTTCAGCA
AAAGCTCCGAGACCTCACTTTAATGAGAATGCCAAATTTCAGATGGTGTTCACACTGTAG
TGGAGGATTTCAGTTTGAAATTGAAATAGAAAATAATTTAAAGATGATATGTCCATTCTG
CCAGAAGGGCACGTGCTATTCGTGTAAAAAGCAATGGGAACCACAGCATGAAGGTATATC
TTGCGAACAATTCCAGCTATGGAAAGAAAGTAACGATCCAGAATTTCAAGCAGCTGGTTT
GGCGAGACATCTCAAAGAAAATGGAATAGATTGTCCAGACTGCAACTTCCGATATGCTCT
TGCCAAAGGTGGATGCATGCACTTCAAATGTACCCAGTGTTCTCATGAGTTTTGCAGCGG
TTGCAAGAGTCCATTCAAGCATGGCAGGGCATGCAACATATTTCCATCTTGCATCTCGAA
AGGCCTGCACGCTCACCATCCCCGGGATTGCTTGTTTTACTTGAGAGATAGCGATCCGGA
AATGTTTCAGAAGCTGCTTGACAAATACAATGTGCAATATAATTCAGAAGGACCGAATCA
GGGAAAATGTCAGGTGGTAGAACAAAAGGAAACATCAACAGGAATGAAAGATGACTTTTG
TGGGAGAGAACTGAAGAGAGGACAGGCAGGGTTGTGCAAGCTGCATTATAATGAATACTT
GGTCAACCTTGTCATCGTCAATGGACTTGACCCAGCCGAAGTATTCTCCATTGACCAGCT
AAAACCTTGCCTTATGAGAGAAGACAAACCAATACCTAAAAGGCTGGACAACGAAACGGA
CGAAAACTATGCCAAGCGTCTGCTGAAGGAAGTCAAAAAATTACCGCTAATAAAACGACA
AAGAAGAAACTAATTGCTATATATTTATTCCACTAATGGATTTACAAATTACTTACAATG
TAATAACATCTTTTCAACGTTTAATTTTTTATTTTATTTTGTGCTGTATGATTTGCAAAT
AGACGCCGGTGTGCGTGCTCCAGCTAAATCAATACTGTATCTCGTGAACAAGTTTTGGAT
GCATGCTTCCTTACTGTATCTTTGTATTAAAAAGCATTAATAACACTCTGATCACC
| SUPERFAMILY |
PUB-like_dom_sf (IPR036339) - T[68-141] 1.44E-10 |
| Pfam |
PUB_domain (IPR018997) - T[71-139] 1.1E-11 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[304-350] 8.631 - T[442-488] 8.631 |
| SMART |
Znf_B-box (IPR000315) - T[304-350] 0.27 - T[442-488] 0.27 |
| PANTHER |
RNF31 (IPR026254) - T[846-1555] 7.9E-243 |
| Pfam |
RNF31-UBA (IPR032065) - T[962-1096] 7.4E-6 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[1183-1278] 7.8E-7 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[1187-1239] 9.096 |
| SMART |
IBR_dom (IPR002867) - T[1271-1336] 1.9E-9 - T[1348-1406] 0.073 |
| Pfam |
IBR_dom (IPR002867) - T[1273-1336] 1.4E-7 - T[1361-1406] 1.9E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RNF31_HUMAN | 35.795 % | 362 | 1.64E-105 |