- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S178.g08817.02.t
Possible name(s)
KCNB1; KCNB2; KCNF1
Gene model
Location
S178 [109,693 / 112,180]
Amino acid sequence
Length: 537
>Harore.CG.MTP2014.S178.g08817.02.p
MSTKRSNIGNSAARKVMKLNVGGIRYSIKEDVLDRFPHSRLSKLRDCAMRHLCDEYDGED
NVYFFDRDPDSFRILQSCYKGAPIHMPRSMCPLRLTEEMAYWGIDNAQLDPCCQERRYTA
LKFVEELELEVEKKIKLKESAENKAVLSFKDVRTWKNFVDNVSKIRWVMWITFTVPSSSI
YAKAWTLTSIGFIILSLTTFVISTLDEFQEYTLEGVETENEVISIIEKVCITWFTLEYSL
PFIASDDKLVYVRGALNIIDLITIVPYFAQLYLESSSYSGGQELQSLSNVMQVFRIMRVL
RVFRLGRHSTGLQVLFKTILQSSSELALLTMYLVMGTILLATIMHSIEDGGKFEHLGDAF
WWAAITITTVGYGDIIPETVPGKLVASASFLIGVLAFGIPIHPIITNFTFFYKRSEEVDF
AFKRTLKKQELQLLNEEEVEFNLVNIENPIENDVSSTVTSRDDVIYEEPNARGLPRVNQV
SNPPRGALWKRAMQKINAKGYSKQRKFSSQSGNSTSTHGKVSLPCTCMFCKDEVSYF
Nucleotide sequence
Length: 1,614
>Harore.CG.MTP2014.S178.g08817.02.t
ATGTCTACAAAACGTTCAAATATTGGAAATTCTGCTGCTCGCAAAGTCATGAAACTCAAT
GTGGGAGGAATACGATATTCAATCAAGGAAGATGTTCTGGATCGTTTCCCGCACAGTCGT
TTGTCCAAGTTGAGGGATTGTGCCATGAGACATCTCTGTGACGAATACGACGGAGAAGAC
AATGTATATTTCTTTGATCGGGATCCTGATTCATTTCGTATTTTACAGTCGTGTTATAAA
GGAGCTCCGATACATATGCCGAGATCAATGTGCCCCCTTCGCTTGACTGAGGAAATGGCT
TATTGGGGAATAGACAACGCCCAGCTAGATCCCTGTTGCCAGGAAAGGCGGTACACTGCC
TTGAAATTCGTTGAAGAATTAGAACTGGAAGTTGAAAAGAAAATCAAATTGAAAGAAAGT
GCAGAAAACAAGGCGGTGTTGTCTTTTAAGGACGTTCGTACGTGGAAAAATTTCGTCGAT
AATGTTTCAAAGATTCGTTGGGTTATGTGGATAACATTTACGGTTCCTTCCTCGTCTATC
TACGCTAAAGCTTGGACATTAACATCAATCGGATTTATTATCTTATCCTTGACGACATTT
GTGATAAGTACCTTGGACGAATTTCAAGAATATACACTTGAAGGAGTTGAAACCGAAAAC
GAAGTTATCTCCATAATCGAAAAAGTCTGCATTACTTGGTTCACTTTGGAATACAGCCTT
CCCTTCATTGCCTCCGATGACAAACTTGTTTACGTCCGCGGCGCGCTCAATATCATTGAT
CTGATAACCATTGTCCCTTATTTTGCCCAACTTTACCTCGAGAGCAGTTCGTACAGCGGC
GGGCAAGAATTACAGTCTTTGTCCAATGTAATGCAAGTTTTTCGAATTATGAGAGTCCTA
AGAGTTTTTCGTCTCGGAAGGCATTCGACGGGGCTACAAGTTTTGTTCAAAACGATCTTG
CAAAGTTCATCTGAACTGGCTCTTCTTACTATGTATCTCGTTATGGGAACGATTTTGCTC
GCCACGATAATGCACAGCATTGAAGATGGAGGAAAATTTGAACACCTTGGTGATGCATTC
TGGTGGGCGGCTATCACTATAACGACTGTAGGATACGGAGACATAATCCCCGAGACAGTT
CCTGGGAAATTGGTGGCATCCGCTTCATTCCTCATCGGCGTTTTAGCGTTCGGCATACCG
ATCCATCCAATCATTACAAATTTTACTTTTTTCTATAAAAGAAGCGAAGAGGTGGATTTC
GCTTTCAAGCGAACATTGAAGAAACAGGAACTGCAACTTTTAAATGAGGAAGAAGTAGAA
TTCAACTTAGTGAATATCGAAAACCCGATTGAAAATGATGTATCGTCGACCGTCACATCT
CGTGACGATGTCATATACGAGGAACCGAACGCAAGAGGTCTACCTAGAGTAAATCAAGTA
TCGAATCCGCCAAGGGGTGCATTATGGAAACGCGCAATGCAAAAAATTAATGCCAAGGGC
TATTCGAAACAACGTAAATTTTCATCGCAAAGTGGTAATTCTACCAGTACTCATGGAAAA
GTAAGTCTTCCTTGCACATGCATGTTCTGTAAGGATGAAGTTTCATACTTTTGA
| PANTHER |
VG_K_chnl (IPR028325) - T[12-462] 7.9E-118 |
| SUPERFAMILY |
SKP1/BTB/POZ_sf (IPR011333) - T[15-116] 2.25E-24 |
| Pfam |
T1-type_BTB (IPR003131) - T[18-112] 1.5E-21 |
| PRINTS |
K_chnl_volt-dep_Kv9 (IPR003971) - T[20-32] 1.9E-12 - T[35-51] 1.9E-12 - T[101-113] 1.9E-12 - T[189-201] 1.9E-12 - T[392-410] 1.9E-12 |
| PRINTS |
K_chnl_volt-dep_Kv (IPR003968) - T[62-72] 1.0E-11 - T[301-309] 1.0E-11 - T[325-339] 1.0E-11 - T[393-404] 1.0E-11 |
| PRINTS |
VG_K_chnl (IPR028325) - T[62-81] 4.3E-67 - T[176-204] 4.3E-67 - T[225-248] 4.3E-67 - T[251-271] 4.3E-67 - T[296-322] 4.3E-67 - T[325-348] 4.3E-67 - T[353-375] 4.3E-67 - T[382-408] 4.3E-67 |
| Gene3D |
Volt_channel_dom_sf (IPR027359) - T[157-308] 7.6E-36 |
| Pfam |
Ion_trans_dom (IPR005821) - T[183-415] 2.0E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| KCNB1_HUMAN | 38.876 % | 308 | 3.56E-95 |
| KCNB2_HUMAN | 39.151 % | 304 | 2.33E-93 |
| KCNF1_HUMAN | 34.713 % | 268 | 7.76E-84 |