Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S179.g05048.01.t

Possible name(s)

TMED1; TMED5; TMED7

Gene model

Harore.CG.MTP2014.S179.g05048

Location

S179 [42,589 / 104,231]

Sequences

Amino acid sequence

Length: 274

>Harore.CG.MTP2014.S179.g05048.01.p
MRPITSSKRVFQLIYSNICRTIEVIMQFVGLLIFLSLIFFSLGYKDTDFTVIVPAKRREC
FYQPTIGGKTIDIEYQVIDGGDMDINFMVQAPNGRVVMNEFKKNDGMHTIDPTTEGDYVI
CFDNSFSRMTEKKVFFEIIEDAGGEDTDEDEGWKDAVVQDEVYGDKLASLEVAADKMSVI
RNNLGKTSQLQGLLRAFEAKDRWIAERNYERVNMWSMLNIVVMLSVFSLQVFMVRNMFND
KKKVPTFFTIACYGYLRFSLAEPEPPLTQNEIWM

Nucleotide sequence

Length: 906

>Harore.CG.MTP2014.S179.g05048.01.t
ATGAGGCCTATTACATCAAGCAAAAGGGTATTTCAACTAATTTATTCAAATATTTGTAGA
ACAATTGAAGTCATAATGCAGTTTGTTGGACTCTTGATATTTTTGTCATTAATTTTTTTT
TCGCTCGGGTACAAAGATACTGATTTCACTGTGATCGTTCCAGCAAAGAGAAGAGAATGT
TTTTATCAACCGACAATAGGTGGAAAAACAATTGATATCGAATACCAGGTTATCGACGGA
GGTGACATGGACATCAATTTCATGGTTCAAGCTCCGAACGGACGAGTTGTTATGAATGAA
TTCAAGAAGAATGACGGAATGCACACCATCGATCCAACAACGGAAGGAGATTACGTAATC
TGTTTCGACAACTCGTTCAGTCGGATGACCGAGAAAAAAGTCTTTTTCGAGATAATCGAA
GATGCAGGAGGTGAAGACACAGATGAAGATGAAGGATGGAAGGATGCGGTCGTGCAGGAT
GAAGTTTATGGAGATAAACTTGCAAGTCTGGAGGTAGCAGCGGACAAGATGTCGGTGATT
CGAAACAATCTTGGGAAAACTTCTCAGCTGCAAGGATTGCTTCGTGCGTTCGAAGCAAAA
GATAGATGGATTGCAGAGAGAAATTATGAGAGAGTCAACATGTGGTCAATGTTAAACATA
GTCGTTATGTTGTCTGTATTCAGCCTCCAAGTGTTCATGGTTCGAAACATGTTCAACGAC
AAAAAGAAAGTTCCGACATTCTTCACAATAGCTTGTTACGGATACTTACGGTTCTCCTTG
GCCGAACCTGAACCACCACTGACCCAAAATGAAATTTGGATGTAGTATGCAATATTTGAT
GACATTTGGCCATTGCAAATTAATTACAGTAATATATATAAACATTTCTATAAATTTGGG
GCCCAC

InterProScan

PANTHER	TMP21-related (IPR015720) - T[44-245] 2.9E-63
SMART	GOLD_dom (IPR009038) - T[48-239] 1.3E-48
Pfam	GOLD_dom (IPR009038) - T[49-239] 6.2E-37
SUPERFAMILY	GOLD_dom_sf (IPR036598) - T[57-145] 2.09E-21
ProSiteProfiles	GOLD_dom (IPR009038) - T[58-140] 21.251

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TMED7_HUMAN	30 %	88.6	3.96E-21
TMED1_HUMAN	43.564 %	168	1.16E-51
TMED5_HUMAN	45.274 %	176	8.79E-55