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- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S179.g15322.01.t
Possible name(s)
LHX1; LMX1A; LMX1B
Gene model
Location
S179 [161,919 / 164,537]
Amino acid sequence
Length: 418
>Harore.CG.MTP2014.S179.g15322.01.p
MIMKLKTSSHVYHVTCFNCSYCDQQLEKGDEYVIKSEFQTIQDKLGLTCKTCWREEMTSQ
LENMTSDSVTSPTQNFAEHGENTSPISEKIITSQSFESLRHSEQNEVAGLDLNLLNIPSH
STMSSSPENTNDVTESVTSPKSQSSALSQKSDDEGDSSDDEKDSKSLNTSSVKDDDEDKD
SNDRDEYDVGGKRSKRPRTILNASQRRAFKAAFEMSPKPCRKVRESLASDTGLTVRVVQV
WFQNQRAKMKKLAKRQHTQEQIKSREQFGYHGYDPMTSLQHQIPPILPSHPDVIMEQGYG
RFHYPHPHNVAMWEQSIGQQPMAYHHQQASNYSEALHYEQMNVSEERHNVMNMTSPSHFN
EPNNNTIFPNHEMIGGQSTASHMFPTTNDHEVLLDVSQSVMSSPMDGIYTMQNNYFNS
Nucleotide sequence
Length: 1,257
>Harore.CG.MTP2014.S179.g15322.01.t
ATGATAATGAAACTAAAAACATCCTCACATGTCTATCATGTCACGTGTTTCAACTGCTCC
TATTGTGACCAACAATTGGAAAAAGGAGATGAATACGTCATTAAAAGCGAATTTCAAACG
ATTCAAGACAAACTCGGTCTTACTTGCAAAACATGTTGGAGGGAGGAAATGACCTCACAA
CTCGAAAATATGACGTCAGACAGCGTTACGTCACCCACGCAAAATTTCGCTGAACATGGC
GAAAACACTTCGCCTATTTCTGAGAAGATTATTACTTCACAAAGCTTCGAATCATTACGT
CACAGTGAGCAAAATGAAGTAGCGGGCTTAGATTTAAACTTGTTAAATATACCAAGTCAT
TCGACAATGTCGTCATCACCGGAAAATACGAATGACGTCACGGAATCTGTGACGTCACCT
AAATCTCAATCTTCCGCTTTGTCGCAAAAATCTGACGACGAAGGAGATTCCTCCGATGAT
GAGAAAGACTCAAAATCGCTCAATACGTCATCAGTAAAAGATGATGACGAAGATAAAGAT
TCTAACGACAGAGACGAATATGACGTAGGAGGAAAGCGTTCCAAGAGACCTCGTACTATA
TTAAATGCATCTCAACGTCGTGCATTCAAAGCAGCGTTCGAAATGTCGCCAAAACCTTGC
AGAAAGGTAAGAGAAAGCCTCGCATCTGACACTGGTCTCACTGTACGTGTTGTACAAGTT
TGGTTTCAAAACCAACGCGCTAAAATGAAAAAACTTGCAAAGAGACAACACACCCAGGAA
CAAATCAAATCTCGAGAACAGTTTGGTTACCACGGATACGACCCCATGACGTCACTGCAA
CACCAGATACCTCCCATACTCCCTTCGCATCCTGACGTCATAATGGAGCAGGGATACGGC
CGTTTTCATTACCCACATCCTCATAACGTGGCAATGTGGGAGCAGTCAATAGGTCAACAA
CCAATGGCTTATCACCATCAACAAGCAAGCAATTATTCAGAAGCGTTACATTATGAGCAA
ATGAACGTTTCCGAAGAACGTCACAATGTCATGAATATGACATCACCTTCACACTTCAAT
GAACCTAACAACAACACTATATTTCCCAATCATGAAATGATAGGCGGGCAAAGTACAGCA
AGTCACATGTTTCCAACTACCAATGATCACGAAGTATTGTTAGATGTTAGCCAATCAGTG
ATGAGTAGTCCAATGGACGGAATTTATACGATGCAAAATAATTATTTCAATTCTTAA
| Pfam |
Znf_LIM (IPR001781) - T[6-53] 5.4E-6 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[185-252] 9.41E-19 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[192-252] 17.184 |
| SMART |
Homeobox_dom (IPR001356) - T[194-256] 2.3E-21 |
| Pfam |
Homeobox_dom (IPR001356) - T[195-251] 1.6E-17 |
| CDD |
Homeobox_dom (IPR001356) - T[195-251] 6.05022E-18 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[227-250] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LMX1A_HUMAN | 57.798 % | 120 | 1.55E-30 |
| LMX1B_HUMAN | 35.154 % | 129 | 1.23E-33 |
| LHX1_HUMAN | 44.248 % | 94 | 5.31E-21 |