- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S183.g10973.02.t
Possible name(s)
RNF20; RNF40
Gene model
Location
S183 [46,815 / 56,475]
Amino acid sequence
Length: 934
>Harore.CG.MTP2014.S183.g10973.02.p
MKLLYPREYSIMFKQAMASKRHHDVESEEEPKAKRSTTTLIPPVNLGSISSLEEMDIKRL
QFQNKKLAERLDTRKREEGELLQRIESLEAKQSAADATLSLVNRHWSQLDDNIKVMLQRL
GVIKLAKTNKDESDDSDDESKASFVRMLAKSDFLQTKEELGKRVDFSKHAFSKLIDAIGE
EAAQRRSVHSALTENENLDIIVKEQMSNLTQENKRFQELVEQLQTKHNTISLGSRDAEQR
MEALEDQIENLEESNENLQWELQKARKREDRLNKHLSEAFEKITKGATSEQGVAISSSGV
PVPGNKNNDATAQLEDNQCLAESRLKELEEMKTKYQSALKEIEQMKVNLKKPAEATIISS
SEYQALKSQFSLLFNESVQLKTLVDESRALLQQTRNAQLRQIEQMEIEELQTQKKLRNEL
IQLEDTLAKVRHDYEMLHMEFEQNLAANEQAGPINREMRHLINSLQNHNRQLKGEIQRYK
RKVRDLQNEISKLKKEETDLVKKEKDAASSAKPESEDPEDSSIKVEVNSEPQDQLADGSS
DGSSKDDNTGANCTKNTEVEELTLKIKALNEKVEEQTALLESYKGLSNEDKQLAEMKVDE
TQYLAKIEKLINTITEMENERDKLMKEAIARENELLSAVAVAEEKLELSGRSIMPSPEHR
RKMKVLEETITELRRNVAATKQEEEALLSEMDVTGQAFEDMQEQNIRLLQQLREKDDANF
KLMSERIKANQIQKLLREEKDVLQDQAMTLHTQVEAQNQVVRRLEEKEQAVHTHQMLMEK
EIGMRTQAFEMHKRKAFELSQMCEDQRRDIEKLRERATSAEESIGQKVETIEEEHYKLSR
AQEDCAHLRRKLERQKKNEMYYNSDEILMEEIKEYKTKLRCPCCNVNNKDAVLTKCFHVF
CLNCIRTRYETRQRKCPKCNAGFGGNDFHRIYIE
Nucleotide sequence
Length: 3,391
>Harore.CG.MTP2014.S183.g10973.02.t
ATGAAACTTTTATATCCAAGAGAATATTCAATCATGTTTAAACAAGCCATGGCAAGTAAA
CGACATCATGATGTTGAATCGGAGGAGGAGCCAAAGGCGAAGCGATCTACTACGACTTTG
ATTCCTCCTGTGAATCTGGGAAGTATTTCGTCTCTGGAAGAGATGGACATCAAGAGGTTG
CAATTTCAAAACAAAAAATTGGCCGAGAGATTGGACACAAGAAAACGTGAAGAGGGCGAA
CTCTTGCAGAGAATAGAATCTCTGGAAGCGAAACAATCGGCTGCAGATGCAACGTTGAGT
CTCGTCAATCGCCATTGGTCTCAGTTGGATGACAACATCAAAGTGATGCTTCAACGTCTC
GGCGTGATAAAACTGGCTAAAACTAATAAGGACGAATCTGACGATAGTGATGATGAATCG
AAAGCTTCGTTCGTTAGGATGCTGGCGAAAAGTGACTTCCTCCAGACCAAGGAAGAACTC
GGTAAGAGAGTCGACTTTTCAAAACATGCTTTCAGTAAACTGATAGACGCCATAGGCGAG
GAAGCGGCGCAAAGAAGATCAGTTCATAGTGCCCTGACTGAAAATGAAAACCTTGATATC
ATTGTGAAAGAACAAATGTCAAATTTGACCCAAGAAAACAAACGTTTTCAAGAATTGGTG
GAGCAATTACAAACGAAACACAACACGATTTCTCTCGGATCACGAGACGCAGAACAGCGT
ATGGAGGCGCTCGAAGATCAGATCGAGAATTTGGAAGAATCGAATGAGAATCTGCAGTGG
GAATTGCAGAAGGCGAGGAAACGAGAGGATAGGTTGAACAAACATCTTTCTGAGGCTTTT
GAAAAGATTACCAAAGGTGCAACCAGTGAACAAGGTGTAGCCATTTCTTCTAGTGGAGTT
CCAGTTCCTGGAAATAAGAATAACGATGCCACCGCGCAGTTGGAAGACAACCAGTGTTTG
GCCGAAAGTCGACTGAAGGAGCTCGAAGAAATGAAAACTAAATATCAGTCTGCATTGAAA
GAGATAGAGCAGATGAAAGTTAATCTCAAGAAACCTGCGGAAGCCACCATCATTTCTTCG
TCAGAATATCAGGCACTGAAATCGCAATTTTCGCTCCTCTTCAACGAGAGTGTTCAACTC
AAGACGCTGGTGGACGAAAGTAGAGCTCTACTGCAGCAAACCCGGAACGCTCAACTGAGA
CAGATTGAACAAATGGAGATCGAAGAACTCCAGACACAGAAAAAATTGAGAAATGAACTG
ATACAACTCGAAGACACTCTTGCTAAGGTCCGCCACGATTACGAAATGCTGCACATGGAA
TTTGAGCAAAACCTTGCGGCCAATGAACAAGCCGGCCCGATCAACCGTGAGATGCGTCAT
CTTATCAACAGCTTGCAAAACCATAATCGCCAGTTGAAAGGCGAGATCCAGAGATACAAA
AGAAAAGTTCGCGACCTCCAAAATGAAATCAGTAAATTGAAAAAAGAAGAGACTGACCTG
GTCAAAAAAGAAAAAGATGCGGCGTCTTCTGCAAAACCAGAGAGCGAAGACCCGGAAGAC
TCGAGTATCAAAGTGGAAGTGAATAGCGAACCTCAAGATCAGCTAGCTGACGGTTCATCC
GATGGATCCAGCAAAGATGACAACACAGGAGCGAACTGTACCAAGAACACAGAAGTGGAA
GAACTCACTTTGAAAATAAAAGCTTTGAATGAGAAAGTTGAAGAACAGACCGCTCTACTT
GAATCTTACAAAGGGTTATCGAACGAGGATAAGCAACTGGCCGAGATGAAAGTGGATGAA
ACTCAGTATCTTGCCAAGATCGAAAAGTTGATAAACACGATAACGGAAATGGAGAATGAG
AGAGATAAACTGATGAAGGAAGCGATAGCGAGAGAAAACGAACTTCTATCAGCTGTCGCC
GTCGCTGAAGAAAAGCTTGAATTATCAGGAAGAAGTATCATGCCGAGTCCCGAACATCGT
CGAAAAATGAAGGTTCTCGAAGAAACGATCACCGAACTGCGCCGTAACGTTGCTGCTACA
AAACAAGAGGAAGAAGCTCTCCTATCTGAGATGGATGTCACCGGCCAGGCATTCGAAGAC
ATGCAGGAACAAAACATTCGTCTCTTGCAACAGTTGCGAGAAAAAGATGATGCCAATTTC
AAACTCATGTCTGAGAGAATCAAGGCGAATCAAATCCAGAAACTTCTCAGAGAAGAGAAA
GATGTCCTTCAGGATCAAGCCATGACTCTTCATACTCAAGTCGAAGCACAGAACCAGGTA
GTGCGAAGGCTGGAAGAGAAAGAACAGGCTGTGCACACACATCAGATGCTAATGGAAAAA
GAGATCGGTATGAGAACGCAAGCTTTTGAGATGCACAAGCGAAAAGCGTTCGAATTGTCT
CAAATGTGCGAAGATCAAAGACGAGATATCGAGAAGCTTAGAGAACGTGCTACCAGCGCG
GAGGAGTCCATCGGTCAAAAAGTGGAGACGATTGAAGAGGAGCATTATAAGCTAAGCCGG
GCCCAGGAGGATTGTGCGCACCTTCGTCGCAAATTGGAACGGCAAAAAAAGAATGAAATG
TATTATAACAGTGACGAAATTTTGATGGAAGAAATAAAAGAATATAAGACCAAACTTCGA
TGTCCTTGTTGCAATGTGAATAACAAGGATGCTGTGTTGACCAAATGCTTCCATGTTTTC
TGTCTGAATTGCATCAGAACAAGATACGAAACGAGACAAAGGAAATGCCCCAAATGTAAT
GCAGGATTCGGAGGAAATGATTTCCACCGGATCTATATTGAATGAGCTGATATATTATAA
AGTAAATAGAAGTTCTTTTCTTTTTCAATGTGTGCATTGTTCGAGTCTTATATAGATTGT
ACACAATATGGAAAAAGAAGAAGACTTCTTGTTGTGCATGTACACTTCTTTTCAACAGGG
TTGAATTTAGGAAAATTTGTGTCGTCTGTCAATGGTCCAGTCTGTAGTCTGTGTATTTGT
AGCTGTCACAAACTCTGTTACCCTCAATGTACGTCATTGTTCGAAATAAGTGTGATTAAC
AAGCAATCTATGCTGCCATCTAGTTGTGCTTAGTTGTCAGCCTACCTTAGGAGATGGTAT
TACGTGTTAAGATAGGTTATAGGGAATAGAACTGGTTCAGTTGTTATTCATACAATTCTA
TTCCATATAAAGGTGAAAGGGATCATATGAATATTTCTTGACGTATTTTCGTCATGTATT
ATTCACCTTAAATGTGATTTCGTTGACTTTGTTCGATAGCAAAGCATTAAGACTTTGAAA
TATGATTTGCAGCGGTTCACTCAGCAATGAATAATGCAGCCAGGTTCGTCTGGAAAACGA
AATTCTAATTTTTATCTTGACTGTAATCAGA
| PANTHER |
E3_ubiquit_lig_Bre1 (IPR013956) - T[32-933] 9.6E-249 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[860-934] 7.9E-18 |
| Pfam |
Znf_C3HC4_RING-type (IPR018957) - T[881-919] 6.5E-5 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[881-920] 10.675 |
| SMART |
Znf_RING (IPR001841) - T[881-919] 0.0012 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[896-905] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BRE1B_HUMAN | 42.909 % | 377 | 2.6E-115 |
| BRE1A_HUMAN | 62.637 % | 338 | 3.55E-101 |