- Transcript 'Moocci.CG.ELv1_2.S61...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S184.g04760.01.t
Possible name(s)
SNAI1; SNAI2; SNAI3
Gene model
Location
S184 [52,092 / 54,874]
Amino acid sequence
Length: 606
>Harore.CG.MTP2014.S184.g04760.01.p
MKVYKEMYRNLNHQIYKQLQLPYLLYLEEHYGKSVFLDMDMCFISYEEKKKDIIDTNDSS
TLYDDSCSSSNDECSAPTSVTSPSSCSAGSSKYTDNNNRTSDSSLTTSHDFGTSDDIADD
LQPIDLSLKKQNDRIRFCNDNRTKQLPQRTNENYNDFLMQKMDSFPMLNFPIPSSMRGYS
PWHHYMCASPLSFIPPSSLPNWNPVSSIGEMIMPMNPLLYGLPMGEVSSASVAKPSYYET
SQHLWKSLATAGRADASLFRKFVATHEDAYAPKKGRAAPMFPNQELYQVWDQHLKRTDDR
KSRTDLEKELVDDQVIPQKISARVKKERDINVHQYFKNNQECTSAGRTEEQSRSTDQQRY
VIDREEGKFLIKNEKYYQRLIKTKDKNLLENKSPNKRRNEDPSTSDEHYGTSAKKIKMQA
SEDTNKELVHASTSDNTDDSNQINGTSKNIGGNLQMTPKPINFKPCRFHCSECGRTYATV
GGLMKHSKYHHDPENAMTFKCKTCEKEYTSLGALKMHIRTHTLPCKCHICGKAFSRTWLL
QGHIRTHTGEKPYQCSVCLRAFADRSNLRAHMQTHQNVKRYACTGCEKTFSRTSLLNRHR
ASGCVP
Nucleotide sequence
Length: 1,821
>Harore.CG.MTP2014.S184.g04760.01.t
ATGAAAGTGTATAAGGAAATGTATAGGAATCTCAATCATCAAATATACAAGCAATTACAA
CTACCTTATTTGTTATATCTTGAAGAACACTACGGAAAATCAGTATTCTTAGACATGGAT
ATGTGTTTTATTTCTTACGAGGAAAAGAAAAAAGATATAATTGATACCAACGATTCTTCG
ACCCTTTACGACGATTCTTGCTCCAGTAGTAACGATGAATGCAGTGCACCTACAAGTGTG
ACCTCCCCCTCTTCATGTAGTGCAGGTTCTTCGAAATATACCGATAACAACAATAGAACT
TCAGATTCGAGTCTCACTACTAGTCATGACTTCGGGACATCAGATGACATAGCAGATGAC
TTGCAACCTATTGACTTATCTTTAAAGAAACAAAATGATCGCATCCGTTTTTGCAATGAC
AACAGAACTAAGCAACTGCCTCAACGTACCAACGAAAACTATAATGATTTTCTCATGCAA
AAAATGGATAGTTTCCCTATGTTAAATTTTCCGATCCCATCGTCCATGCGAGGGTATTCA
CCGTGGCATCATTACATGTGCGCATCGCCTCTATCTTTCATTCCGCCATCATCTCTTCCT
AACTGGAACCCGGTCAGCTCCATAGGCGAAATGATTATGCCAATGAATCCTCTTTTGTAT
GGGTTACCCATGGGCGAAGTTTCGTCTGCTTCCGTTGCTAAACCAAGCTATTACGAAACT
TCGCAACACCTTTGGAAATCTTTAGCCACCGCAGGACGAGCAGACGCTTCGTTATTCCGT
AAATTTGTTGCGACTCACGAAGATGCATATGCACCGAAAAAAGGAAGAGCTGCCCCGATG
TTCCCGAATCAAGAGCTGTATCAGGTGTGGGATCAGCATTTGAAAAGAACCGATGACAGA
AAATCAAGGACGGATCTCGAGAAGGAGTTAGTTGATGATCAAGTAATTCCCCAAAAGATA
TCAGCAAGAGTTAAGAAGGAAAGAGACATCAACGTGCATCAGTATTTCAAAAATAATCAA
GAATGCACAAGTGCAGGAAGGACAGAAGAGCAAAGTCGATCGACAGATCAACAACGATAT
GTTATTGACCGCGAAGAAGGCAAGTTTCTTATCAAAAATGAAAAATATTATCAAAGGCTT
ATCAAGACGAAAGACAAAAATCTATTGGAGAATAAGTCACCCAACAAGAGACGCAATGAA
GATCCTTCAACATCGGACGAACATTACGGCACATCAGCAAAGAAAATAAAAATGCAAGCG
AGTGAAGATACAAATAAGGAGTTAGTTCATGCGTCCACTAGTGACAATACTGATGATTCG
AATCAAATAAATGGAACCTCGAAAAATATTGGCGGTAATTTGCAAATGACACCCAAACCA
ATAAACTTCAAGCCTTGTCGTTTTCACTGTTCGGAGTGCGGAAGAACATATGCGACAGTC
GGTGGGTTGATGAAGCATTCAAAATATCATCACGATCCGGAGAACGCTATGACTTTTAAG
TGCAAGACTTGTGAAAAAGAATACACTTCACTCGGCGCGCTTAAAATGCATATACGGACC
CATACTCTGCCTTGCAAATGTCATATATGCGGAAAAGCGTTTTCAAGAACTTGGCTGCTT
CAAGGTCATATTCGCACCCATACTGGAGAAAAGCCGTATCAATGTTCGGTGTGCTTGCGA
GCCTTCGCAGACCGCTCGAATCTCCGCGCGCATATGCAAACTCATCAGAATGTGAAACGT
TATGCTTGTACGGGCTGCGAAAAAACTTTTTCACGTACCTCACTCCTCAACAGACATCGG
GCTAGTGGATGTGTACCCTGA
| SMART |
Znf_C2H2_type (IPR013087) - T[468-490] 0.01 - T[499-521] 0.0012 - T[525-547] 0.032 - T[553-575] 1.8E-4 - T[581-601] 55.0 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[468-496] 11.365 - T[499-522] 10.887 - T[525-552] 15.022 - T[553-580] 12.612 - T[581-600] 9.473 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[470-491] . - T[501-521] . - T[525-547] . - T[555-575] . |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[498-536] 6.08E-9 - T[524-575] 2.78E-16 - T[566-600] 1.28E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SNAI1_HUMAN | 71.963 % | 177 | 3.17E-51 |
| SNAI3_HUMAN | 59.509 % | 201 | 6.02E-60 |
| SNAI2_HUMAN | 67.391 % | 207 | 2.3E-62 |