- Clone 'cien53704' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S185.g00783.02.t
Possible name(s)
HMCN1; SPON1; SPON2
Gene model
Location
S185 [104,043 / 115,932]
Amino acid sequence
Length: 1,439
>Harore.CG.MTP2014.S185.g00783.02.p
MGNGASIMPNEDDNVRSFNGHVSHMNTSKLKTENVSDRPAYSDKQQCQGKGSPVGKSVAR
RSEKSVCVGLLCPGNTSDSDTNSLIFTSSCWDSDQSSCGYPALSNLSSIASSSTLSRAPG
LDSNIYCAQLRSQTPTTNCSEDESSCSIGPSNRKSILRRNKDSTNAHKNTIKLRKKAFIK
FVPELKQRPHTAPGFIDLSIDPKQATTTTDSVSNKSKLLCSSVASNEKPVDGKIDDTDVV
NQTVYINAKIDASSQTKLTESVGIQCNLLDLSCFLPDAILDVNDLGSEKILDFAIEAVSR
SQHLDKLRTFSAQSPRRQLSQTNFVNQRCKSAYAILLTKTQMSSESIATSNCHTTLTSTR
VEIESTKVVSSDSESSALLSSDDELPEAFSTQMHRCANATERKYKSCQTKQHCQSLLNET
LYQVNHLSSCTDSKRKMWRKYNQNKRQPIQVENMMTESLRQINSSLQEANKLAYPCGTKL
KKCELESSWICGTTHREMIRFKSVGVIFITHIIAFATAIPYRSSSYDFTCNLTPTTTGRL
PPPRPGDNGFSVKLEGKPEYYNPEKTYTVTLRSTHPVTFRGFALTAVSVDDPARPAGSFK
ILNPWSTKSMLSCSTVVTHATAGKKGSAQFVWTSPSSGFGCVRVTASVIQKGTIWFKGDE
DLSTEICEATESSEVDAVPECCSCGVASYRMTFYGMWSPQSHPKYYPEHSTHWSNVIGAS
HDENYVIWDYGTYASDGVKKVAEWGWPNALEDEIRGQGKSVRSVIKTRAQWPAYQPRNIR
EPPSSLLEVDKDRHLVSLVTMLGPSPDWNVGITKESMCTAECGWEAEKIYDLTPWDAGTD
SGISYISANSPTNPPEKIRALTSSDDEQSPFYNASGGPIPPLARLVLTRLAISGEQCGPS
PTTRPSTSTINTNVRSDIGIDTAVQTSCMYAGWSKWSSCAVTCGWGIKTRTKMLKRQLLP
SASCESSIMEKEICKGSTTCDNEDLNTICLYSEWSEWSACTCENEALRFRTRALKWPSEE
SSCHEPLKEMKFDCPATPCGATASAGCTYSKWTDWMPCTPQCGIGQTLRKRFVTKGERCS
LPIMETTKCMTSSDCSEPVGFDVSSGCNYSPWTGWMPCPVSCGPGQTFKKRVLISSVPSV
HCKEVQIDITECLTSATCPQTLDVAVEQKCIYSDWSDWMACSASCDVGNTQRKRSLKNTS
TGSPCKEIDVITEKCYMPPCHVMSPDFEGQSEVRKKNCIYGPWTAWMSCSVTCGKGETLR
KRFLVKSLDTSRTCEGFVMESNACTVPCGDLPIVVGEHVEAPFVPDDTSSQLVDPEIDCS
DITWGDWSSCSATCGTSTQSRYRNVPEQCRRFITVRYQQQTCAVPKKCPIDCLSGEWSEW
SICQSCGASKASRHLSKSKRDSTSAVRGWQVRTRKRLRKAKFGGASCPPRKEKRKCRCE
Nucleotide sequence
Length: 4,956
>Harore.CG.MTP2014.S185.g00783.02.t
ATGGGAAACGGGGCTAGTATAATGCCAAATGAGGACGATAATGTTAGATCTTTCAACGGA
CATGTTTCACACATGAACACGAGCAAATTGAAAACTGAAAATGTATCTGACAGACCAGCA
TATTCAGATAAGCAACAATGTCAAGGCAAAGGATCACCAGTTGGCAAGAGTGTCGCTCGA
AGAAGTGAGAAGTCAGTGTGTGTTGGCCTGTTATGCCCAGGGAATACATCTGATTCTGAT
ACAAATAGCTTGATTTTTACATCTAGCTGCTGGGATTCTGATCAAAGCAGTTGTGGATAT
CCAGCACTTTCAAACCTTTCTAGCATTGCTTCTTCAAGCACCCTTTCGAGAGCACCTGGG
TTGGATTCTAACATTTATTGTGCTCAACTAAGATCACAGACACCAACTACGAACTGTTCA
GAAGATGAAAGCAGTTGTAGCATCGGTCCATCCAATCGAAAATCCATATTAAGAAGAAAC
AAGGATTCGACCAATGCGCACAAAAACACAATAAAACTAAGGAAAAAAGCATTTATTAAA
TTTGTTCCAGAACTGAAACAAAGACCGCATACAGCTCCAGGATTTATAGATTTGTCAATC
GACCCAAAACAAGCAACGACAACCACTGATTCGGTATCTAATAAATCCAAACTCCTATGT
TCATCTGTTGCAAGCAATGAGAAACCTGTTGATGGCAAAATTGATGATACTGATGTCGTT
AATCAAACAGTCTATATCAATGCTAAAATAGATGCTTCCTCTCAAACAAAGCTTACAGAA
AGTGTTGGGATCCAGTGTAATCTTTTAGATCTAAGTTGCTTTTTGCCCGATGCAATTTTG
GATGTGAACGATTTGGGAAGTGAGAAAATATTAGACTTTGCCATTGAAGCTGTGTCTCGG
TCACAACATCTAGACAAACTGAGAACTTTCTCAGCACAGTCACCAAGAAGACAACTATCT
CAAACTAATTTTGTCAATCAGAGATGCAAATCAGCTTATGCTATTTTACTTACTAAAACA
CAAATGTCCAGTGAAAGCATTGCTACTAGTAACTGCCACACTACATTGACCAGTACACGG
GTGGAAATTGAATCTACAAAAGTAGTCTCAAGTGATAGTGAATCTTCTGCATTGTTGTCA
TCTGATGATGAGTTGCCCGAAGCATTTTCCACACAAATGCACAGATGCGCCAATGCAACT
GAAAGAAAATACAAGTCCTGCCAAACTAAGCAACACTGCCAGTCACTTTTGAATGAAACC
CTGTACCAAGTGAATCACCTTTCTTCCTGCACAGACAGTAAGAGAAAAATGTGGAGAAAA
TACAACCAAAACAAAAGGCAACCGATTCAGGTGGAGAATATGATGACAGAGAGTTTAAGG
CAGATTAACAGCAGTTTGCAAGAAGCGAATAAGCTAGCCTATCCTTGTGGAACGAAACTA
AAGAAATGCGAACTTGAATCCAGTTGGATTTGTGGAACTACACATAGAGAAATGATTCGA
TTCAAATCCGTGGGAGTGATCTTTATTACGCATATTATTGCGTTTGCGACTGCCATACCT
TATCGCTCTTCTTCGTACGATTTCACATGCAACTTGACACCGACTACAACGGGTCGATTA
CCGCCCCCTCGTCCGGGCGATAATGGATTCAGTGTTAAATTGGAAGGAAAACCGGAGTAC
TATAACCCTGAAAAAACATACACAGTCACCCTTCGAAGCACCCATCCCGTCACTTTCAGG
GGATTCGCTCTGACGGCCGTGAGTGTAGACGACCCCGCGAGGCCAGCTGGAAGTTTCAAA
ATACTGAATCCGTGGTCCACTAAATCCATGCTATCTTGTTCAACTGTCGTCACTCACGCT
ACTGCCGGGAAGAAAGGTTCAGCTCAGTTCGTCTGGACTTCGCCGTCGTCTGGGTTTGGA
TGTGTGCGTGTGACAGCCAGTGTTATACAGAAAGGAACAATATGGTTCAAGGGAGATGAA
GATTTATCTACGGAAATCTGCGAAGCTACGGAATCTTCTGAAGTGGATGCGGTACCCGAG
TGTTGTTCGTGTGGCGTGGCGAGTTATCGTATGACATTTTACGGTATGTGGTCGCCTCAA
AGTCACCCAAAATATTATCCAGAACATTCAACTCATTGGTCGAACGTCATTGGTGCATCA
CACGACGAAAACTACGTCATATGGGACTATGGGACGTATGCAAGTGACGGTGTGAAAAAG
GTAGCAGAATGGGGATGGCCTAATGCTCTTGAAGATGAAATTCGAGGGCAAGGCAAAAGC
GTTCGTTCAGTGATCAAAACCAGAGCTCAGTGGCCAGCATATCAGCCTCGTAATATCCGA
GAACCACCATCTTCCCTACTAGAAGTAGACAAAGATCGTCATCTTGTCTCGCTGGTTACC
ATGCTGGGTCCCAGTCCGGACTGGAACGTAGGGATTACAAAAGAATCGATGTGCACAGCT
GAATGTGGATGGGAAGCGGAAAAGATATACGATCTCACACCTTGGGATGCTGGTACGGAT
AGCGGAATTAGTTACATATCGGCAAATTCGCCCACCAATCCTCCGGAAAAAATTAGGGCT
TTGACTAGTTCGGACGACGAACAGTCGCCATTCTATAACGCCTCGGGAGGTCCTATTCCT
CCCTTAGCGAGGCTGGTTTTAACTCGATTGGCAATCTCGGGCGAGCAATGCGGTCCAAGT
CCAACTACGCGGCCTTCAACATCTACTATCAATACTAATGTCAGGTCTGATATCGGAATC
GATACCGCTGTTCAGACGTCATGTATGTATGCAGGATGGTCAAAATGGTCCAGCTGTGCG
GTAACGTGCGGATGGGGTATCAAGACCCGAACCAAAATGCTAAAAAGACAGTTGCTTCCG
TCTGCATCTTGTGAGAGCTCAATTATGGAAAAGGAAATATGCAAGGGCTCAACTACATGT
GATAACGAAGACCTGAATACGATATGCCTTTACTCTGAATGGTCCGAATGGTCAGCATGC
ACCTGTGAAAATGAAGCTTTAAGATTTCGTACTCGTGCACTCAAGTGGCCGTCTGAGGAA
TCAAGTTGCCATGAACCACTAAAAGAAATGAAATTTGACTGCCCAGCAACGCCATGCGGA
GCAACCGCATCAGCCGGCTGTACTTATAGTAAATGGACGGATTGGATGCCTTGTACTCCA
CAATGTGGAATAGGGCAAACTCTTCGCAAAAGATTCGTGACGAAGGGAGAGCGGTGTTCA
TTGCCCATAATGGAGACCACTAAGTGCATGACGTCATCTGATTGTTCTGAGCCAGTTGGA
TTTGACGTTTCGTCCGGTTGCAATTATTCACCGTGGACAGGTTGGATGCCGTGTCCAGTG
TCTTGTGGTCCTGGTCAAACGTTCAAGAAGCGAGTTCTTATTTCATCCGTTCCTAGCGTG
CATTGCAAAGAAGTCCAAATTGACATCACCGAGTGCCTGACATCAGCGACATGCCCACAA
ACGTTAGATGTCGCCGTGGAGCAAAAGTGTATATATTCCGATTGGTCTGATTGGATGGCA
TGCTCGGCATCTTGCGACGTTGGAAACACTCAGCGAAAAAGATCTTTGAAAAATACTTCT
ACTGGATCACCTTGTAAGGAAATTGATGTGATAACAGAGAAGTGTTACATGCCCCCATGT
CATGTCATGTCGCCTGATTTTGAAGGACAATCTGAAGTTCGTAAAAAGAATTGTATATAC
GGCCCATGGACTGCTTGGATGTCTTGTTCAGTCACGTGTGGAAAAGGAGAGACACTGAGG
AAAAGATTTTTAGTAAAATCCTTGGATACCTCTCGCACGTGCGAAGGATTCGTGATGGAG
TCGAACGCGTGCACCGTTCCATGTGGAGATTTACCCATTGTTGTTGGCGAGCACGTAGAA
GCACCGTTCGTACCAGATGATACATCGTCTCAGTTAGTTGATCCGGAGATAGATTGTAGT
GATATCACTTGGGGAGATTGGTCAAGCTGTAGCGCTACTTGCGGTACGAGTACTCAATCA
AGATATCGGAATGTTCCAGAACAATGTAGAAGGTTTATAACAGTACGTTATCAGCAACAG
ACATGCGCAGTTCCGAAAAAGTGCCCGATAGATTGTCTTTCTGGAGAATGGTCCGAGTGG
TCCATTTGTCAATCTTGCGGTGCATCGAAGGCATCTCGTCATCTTTCAAAGAGTAAACGA
GATTCTACGTCAGCAGTTCGCGGGTGGCAAGTGCGAACAAGGAAGCGGTTGAGGAAAGCC
AAATTTGGTGGTGCTAGTTGCCCACCACGTAAAGAGAAAAGGAAATGTCGATGCGAGTGA
AATCCTAAGGAATTTTTGCTGTTGTTAATTTACTCTCCACGAAGATTTCCAGTGTTACTC
TACATATGCACCTATATATCATTAACTAATACTAATTTCGTAACTGATGGTCGTTGGCTA
AATGTGAACGTTTGAGAGCGTGAATTCCGCAGTAGAATGTGCGAGATGGAAAACACAATT
CTGGAACCATAGAATGTTTTTCTGGTAAAGAGTAAAATGCGTTTTGACTGGACAGCACTT
TTATCGAATGATATTGGGAACGAACATATTCGAAGTAGACTTTATTTTATTTTCTCCTTG
CCATTTCTTTTGTCTTCAATAATTTTGTTTACTTCATCGTTTTTATCTAATATCCTTTTC
TGCACGCAATTACCATGTATGAAAAACATTGCTAGTTTCCTATCAGCACTCCACTAAACA
ACTATATAAATAAATTTATTTTGGCTAATATTAATGTGGGATTGACTCTCAAAATACAAT
GCTATTCAATTACGAAACCGGTTAATAATTTCCTTATTAAGGAGGCAAATCATGTCGCGT
AACCATGTAAAAAGGAAACAGTAATGTCTATGCTTCAGTCTCGTCTCTCTGTTCCAGACA
TTCAAACATTTTCAATTCACCAACGTTACATGTTAT
| ProSiteProfiles |
Reeler_dom (IPR002861) - T[515-679] 30.224 |
| CDD |
Reeler_dom (IPR002861) - T[529-658] 9.28429E-26 |
| Pfam |
Reeler_dom (IPR002861) - T[545-656] 9.3E-19 |
| Gene3D |
Spondin_N_sf (IPR038678) - T[670-868] 2.6E-66 |
| ProSiteProfiles |
Spondin_N (IPR009465) - T[677-870] 72.225 |
| Pfam |
Spondin_N (IPR009465) - T[687-881] 9.0E-66 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[925-980] 2.5E-7 - T[1045-1090] 1.7E-5 - T[1104-1159] 6.4E-6 - T[1167-1220] 8.9E-11 - T[1235-1288] 1.5E-8 - T[1316-1369] 9.8E-6 - T[1370-1436] 1.9E-7 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[927-981] 8.902 - T[988-1040] 8.825 - T[1046-1096] 9.702 - T[1106-1159] 8.564 - T[1169-1221] 10.756 - T[1237-1289] 9.879 - T[1318-1369] 9.931 - T[1371-1439] 8.669 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[927-974] 1.44E-7 - T[1046-1091] 1.31E-5 - T[1106-1153] 2.22E-5 - T[1168-1220] 6.28E-9 - T[1237-1285] 1.11E-7 - T[1317-1348] 1.96E-6 |
| SMART |
TSP1_rpt (IPR000884) - T[930-981] 1.0E-4 - T[991-1040] 2.4 - T[1049-1096] 0.0085 - T[1109-1159] 0.062 - T[1172-1221] 6.0E-7 - T[1240-1289] 0.002 - T[1321-1369] 3.3E-5 - T[1374-1439] 9.4 |
| Pfam |
TSP1_rpt (IPR000884) - T[933-977] 5.1E-7 - T[992-1039] 0.012 - T[1050-1095] 1.2E-4 - T[1110-1158] 2.1E-5 - T[1173-1220] 8.3E-10 - T[1241-1287] 1.7E-9 - T[1324-1368] 3.0E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 25.831 % | 94 | 5.75E-19 |
| SPON1_HUMAN | 38.239 % | 488 | 1.33E-154 |
| SPON2_HUMAN | 33.916 % | 140 | 3.72E-36 |