Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S186.g11015.01.t

Possible name(s)

HNRNPDL; RBM23; RBM39

Gene model

Harore.CG.MTP2014.S186.g11015

Location

S186 [9,268 / 10,431]

Sequences

Amino acid sequence

Length: 387

>Harore.CG.MTP2014.S186.g11015.01.p
MADDLDVEAMLEAPFKKDQATENGESKSRSKNGRGKSSRDKKRSRSRKRSRSRKESKSRK
HRSRSRSRDKRRHSDRTRRSRSRSRDRRRRRSRSKERRHRSSPIKKAPTPPIVPPEPKER
SPSPADRDARTVFCMQLSQRIRPRDLEEFFSSVGTVRDVKLIADKHSKRSKGIAYVEFKD
MESVPLSLGLSGQKVLGVPIIVQPSQAEKNRVQQTATQSSLQKGNFGPMKLYVGSLHQNI
TEDMLKGIFSPFGKIEQVQLVKDVATNISRGYGFITFTEAECAKRALEQLNGFEIAGKPM
KVSNVTDKADQQAALALASGQTGPSFLDNDAIERTGIDLGTTGRLQLMAKLAEGTGLMVP
SITQQALSMGQAMGLGLRGAINVQSSE

Nucleotide sequence

Length: 1,163

>Harore.CG.MTP2014.S186.g11015.01.t
ATGGCCGACGATCTTGACGTGGAGGCTATGTTAGAAGCTCCGTTCAAGAAGGACCAGGCG
ACCGAAAATGGCGAATCTAAATCAAGAAGTAAAAACGGTAGGGGAAAGAGCAGCAGAGAT
AAAAAACGCAGTAGATCCCGTAAGCGAAGCAGGTCCCGAAAAGAAAGCAAGTCTCGTAAA
CACCGATCTCGTTCAAGAAGCAGAGACAAAAGAAGACATTCCGATCGTACCAGACGTTCT
AGGAGTCGATCGCGTGATAGAAGGCGAAGAAGGAGTCGTTCTAAAGAAAGACGCCATCGT
TCGAGTCCAATAAAAAAAGCACCGACTCCTCCGATTGTGCCGCCAGAGCCAAAGGAACGT
TCGCCCAGCCCTGCAGATCGTGACGCTCGTACCGTGTTTTGTATGCAACTTTCTCAACGC
ATCAGACCACGAGATTTGGAAGAATTTTTTTCTTCTGTAGGCACCGTACGAGATGTCAAA
TTGATCGCCGACAAACATTCAAAAAGATCGAAGGGAATAGCATACGTCGAATTTAAAGAT
ATGGAATCAGTGCCTTTGTCACTTGGCCTGAGCGGACAGAAAGTATTGGGTGTTCCCATA
ATAGTACAGCCGTCGCAAGCTGAAAAGAACAGAGTTCAGCAAACCGCTACTCAAAGCAGC
TTGCAGAAGGGTAATTTCGGACCTATGAAACTGTATGTAGGATCACTGCATCAAAACATC
ACTGAAGACATGCTCAAAGGAATATTTTCCCCGTTTGGTAAAATAGAACAAGTACAGTTG
GTAAAGGACGTCGCAACTAACATTTCCCGTGGTTACGGTTTCATCACGTTTACAGAAGCG
GAATGTGCCAAACGTGCACTGGAACAATTAAACGGATTTGAAATCGCCGGAAAACCTATG
AAGGTGTCAAACGTTACAGATAAGGCTGACCAACAAGCCGCTTTGGCACTGGCCTCTGGT
CAAACAGGGCCCTCATTCCTGGACAATGATGCTATTGAGCGGACAGGAATCGACCTCGGC
ACCACCGGCAGACTTCAATTAATGGCAAAACTTGCCGAAGGCACCGGTTTAATGGTCCCA
TCCATAACCCAACAAGCGCTATCGATGGGTCAGGCCATGGGCTTAGGATTACGTGGTGCC
ATCAATGTACAGAGTAGCGAATT

InterProScan

TIGRFAM	RBM39_SF (IPR006509) - T[22-372] 9.3E-112
Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[57-221] 5.0E-24 - T[228-319] 6.6E-26
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[64-205] 1.61E-21 - T[225-324] 1.48E-28
ProSiteProfiles	RRM_dom (IPR000504) - T[130-207] 14.419 - T[229-307] 19.672
SMART	RRM_dom (IPR000504) - T[131-203] 4.2E-14 - T[230-303] 7.8E-27
Pfam	RRM_dom (IPR000504) - T[132-194] 2.7E-10 - T[231-300] 8.8E-22
Pfam	RBM39_linker (IPR029123) - T[330-374] 1.3E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
HNRDL_HUMAN	33.951 %	85.9	1.96E-18
RBM39_HUMAN	54.568 %	374	2.38E-126
RBM23_HUMAN	50.503 %	334	5.83E-112