Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 653

>Harore.CG.MTP2014.S18.g05863.01.p
MGHGNKGNRNGFGSGDYPSSNSCNNTDFIQERGRGRGIDNSSGGSATRSCFKCGEVGHMS
RDCSSAATGSSGFGRGGGRSRGCFKCGEDGYMARDCHSDTSSGFGGGGERSKGCFKCGQD
GHMARECPSGESSGFDGSTKGNRSYNHGDGENNSDRPPIYVPPPPPEEELMYSTVQSGIH
FDNYDTIPVEVTGENPPRGILTFDEADLPETVRQNIKKANYKKPTPVQKYSIPIVNSDRD
LMACAQTGSGKTAAFLLPVLRGMVKNGITNDMFSEKQLPQAVVVGPTRELVYQIFLETRK
FSKNTIIKPVVAYGGTSVAHQLSQLSRGCNILIATPGRLLDFINRGKVGLANLQYLILDE
ADRMLDMGFEPEIRRLVAAPDIPDKYNRHTLMFSATFPNNIQELAHDFLRDDFLFLTVGR
VGGACSDVTQTVLQVDNNDKREKLMQLIADVEETKARTLVFVDTKRNADFLACFLSQEGC
PTTSIHGDRLQREREQALYDFKSGVCPILIATSVAARGLDIPKVEHVINFDLPSEIDEYV
HRIGRTGRCGNLGQATSFYCDDKDGALARSLVKTLADSQQEVPGWLEDCAESAVGTSFGA
GRGQFGARDARKAGFGRAQTSRQTTDSDYNDGGGAGTKQQSGFDAFGNDESWD

Nucleotide sequence

Length: 1,962

>Harore.CG.MTP2014.S18.g05863.01.t
ATGGGCCATGGAAATAAGGGAAATCGAAATGGATTTGGTTCTGGCGATTACCCTTCCAGC
AATAGTTGCAACAATACGGACTTCATACAAGAAAGGGGAAGAGGAAGAGGAATAGACAAT
TCATCGGGTGGATCTGCTACAAGATCATGCTTCAAGTGTGGCGAGGTGGGCCACATGTCA
AGAGACTGCTCTTCGGCTGCGACTGGTTCTTCTGGATTCGGTAGAGGAGGAGGTAGAAGC
AGAGGATGCTTCAAGTGTGGCGAAGATGGCTATATGGCAAGAGACTGCCATTCAGATACA
TCTTCAGGATTTGGTGGAGGAGGGGAAAGAAGCAAAGGATGCTTTAAATGTGGCCAAGAT
GGCCATATGGCACGAGAATGCCCATCTGGAGAATCCTCAGGATTTGATGGTTCAACAAAA
GGCAACCGAAGCTATAATCATGGTGATGGAGAGAATAATAGCGATAGACCACCGATATAT
GTACCGCCTCCCCCGCCAGAAGAGGAATTGATGTACTCCACTGTGCAAAGCGGAATTCAT
TTCGATAATTATGACACAATACCGGTAGAGGTCACAGGAGAAAATCCTCCAAGAGGCATA
TTGACTTTTGACGAAGCAGACCTGCCTGAAACTGTACGGCAAAACATCAAGAAAGCAAAT
TACAAGAAACCTACGCCCGTGCAGAAATACAGCATTCCGATTGTGAATTCTGATAGGGAT
TTAATGGCTTGTGCTCAAACAGGCTCTGGGAAGACAGCAGCTTTTCTTTTGCCTGTTCTT
CGTGGAATGGTAAAGAACGGGATCACTAATGATATGTTTTCTGAAAAGCAATTACCGCAA
GCTGTTGTAGTTGGCCCTACAAGAGAACTGGTGTATCAGATTTTTCTGGAGACTAGAAAA
TTTTCAAAGAACACAATCATCAAACCAGTTGTTGCATATGGAGGAACCAGCGTAGCGCAT
CAGTTGTCTCAGCTGAGTCGAGGATGTAATATCCTCATAGCCACTCCTGGACGCCTCCTG
GATTTTATCAACCGAGGTAAAGTCGGCCTGGCCAATTTGCAGTATCTGATATTAGACGAA
GCTGACCGGATGCTTGACATGGGATTTGAGCCGGAAATAAGACGGCTTGTCGCGGCGCCG
GATATCCCAGATAAGTACAACCGTCATACCCTCATGTTTAGTGCCACATTCCCGAACAAC
ATTCAGGAGTTGGCTCATGATTTTCTTCGTGACGACTTTTTGTTTCTGACTGTTGGTCGC
GTGGGTGGAGCTTGTTCTGATGTGACGCAAACTGTCCTGCAAGTAGATAACAATGATAAA
AGAGAAAAACTGATGCAGTTAATTGCTGATGTGGAGGAAACTAAAGCGAGAACTTTGGTT
TTTGTTGATACAAAACGCAATGCTGATTTTCTAGCATGCTTTCTTTCTCAAGAAGGCTGT
CCTACTACGAGCATTCATGGAGACAGACTGCAGCGAGAAAGAGAACAGGCATTGTATGAT
TTCAAAAGTGGAGTCTGCCCTATTCTCATTGCTACTTCTGTTGCTGCTCGAGGATTGGAC
ATACCGAAAGTGGAGCATGTCATAAATTTTGATCTGCCGTCAGAAATAGATGAATACGTT
CACCGTATCGGGCGTACCGGACGCTGTGGAAACTTGGGTCAAGCAACATCTTTCTATTGC
GATGACAAAGACGGTGCTCTTGCACGATCACTAGTTAAAACCCTTGCTGATTCGCAACAG
GAAGTGCCAGGCTGGCTGGAAGACTGTGCAGAGAGCGCTGTAGGAACCAGCTTCGGAGCT
GGCAGAGGACAGTTTGGAGCTCGTGATGCCAGAAAAGCAGGATTTGGACGTGCACAAACT
TCTAGACAAACCACTGATTCTGACTATAACGACGGCGGTGGTGCAGGCACGAAGCAACAG
TCGGGCTTTGATGCCTTCGGCAATGACGAAAGCTGGGATTAA

InterProScan

SUPERFAMILY	Znf_CCHC_sf (IPR036875) - T[41-99] 5.8E-10 - T[105-130] 8.37E-6
Pfam	Znf_CCHC (IPR001878) - T[49-64] 2.6E-7 - T[113-129] 5.9E-7
SMART	Znf_CCHC (IPR001878) - T[49-65] 4.3E-5 - T[82-98] 0.083 - T[113-129] 8.6E-6
ProSiteProfiles	Znf_CCHC (IPR001878) - T[50-63] 10.708 - T[83-96] 9.686 - T[114-129] 11.416
ProSiteProfiles	RNA_helicase_DEAD_Q_motif (IPR014014) - T[201-229] 11.776
SMART	Helicase_ATP-bd (IPR014001) - T[220-431] 7.6E-57
Pfam	DEAD/DEAH_box_helicase_dom (IPR011545) - T[225-404] 2.4E-47
ProSiteProfiles	Helicase_ATP-bd (IPR014001) - T[232-415] 30.245
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[279-563] 5.63E-72
ProSitePatterns	RNA-helicase_DEAD-box_CS (IPR000629) - T[357-365] .
CDD	Helicase_C (IPR001650) - T[427-558] 1.74237E-38
Pfam	Helicase_C (IPR001650) - T[439-550] 1.1E-29
ProSiteProfiles	Helicase_C (IPR001650) - T[443-590] 23.042
SMART	Helicase_C (IPR001650) - T[469-550] 3.9E-32