- EST 'rmae18f07' >
- EST 'AHC0AAA235YB17_RM1' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S18.g06062.01.t
Possible name(s)
PUF60; U2AF2
Gene model
Location
S18 [205,906 / 212,098]
Amino acid sequence
Length: 522
>Harore.CG.MTP2014.S18.g06062.01.p
MYDLWSEVVTFVWTRFGRKDFYKSVEYSKNRPQLNSDFIMSAPDEDYKNGGGDYPTQSEK
KPKTEYNEDSDRQDRKRRERSRDPDRRRESRDRDRGRVNRNRDQRKKSPSRKRPNSHSKK
RSRSKSRERNVKKKKQYKYWDVAPAGFEHLTPLQYKAMQAAGQIPLMATTPSLGSANVAV
PGATAPLPGNQMTRQPFYLFQARRLYVGNIPFGVTEDAMMDFFNHQMTLSGLAQAPGNPV
LAVQINLDKNFAFLEFRSVDETTQALAFDGINFMGQSLKIRRPSDYKPLPGSLETPSVHL
PGVVSTVVQDSLQKIFVGGLPNYLNEDQVKELLTSFGPLRAFNLVKDSATSLSKGYAFCE
YVDCQITDQAIAGLNGMQLGEKKLIVQRASVGAKGGIMNMLQTPVTLQVPGMVTAGQQGP
VTEVICLLNMVTEEELKEDEEYDDILEDVRDECNKLGSVKSLEIPRPVPGTDVPGVGKIF
VEFDNATDAQNACNALSGRKFANRVVVTSYYDPDLYHRREFD
Nucleotide sequence
Length: 3,888
>Harore.CG.MTP2014.S18.g06062.01.t
ATGTACGATTTATGGAGCGAAGTCGTGACGTTTGTATGGACCAGATTTGGTAGAAAGGAC
TTTTACAAATCTGTTGAATATTCGAAGAATCGACCACAGTTAAACTCGGATTTCATCATG
TCTGCACCAGATGAGGATTATAAAAATGGCGGCGGAGATTATCCTACCCAATCCGAAAAG
AAACCCAAAACAGAATACAACGAAGATTCTGATCGCCAGGATCGGAAACGCAGAGAAAGA
TCAAGAGATCCTGATCGCAGAAGGGAGAGCCGGGATCGAGACAGAGGCAGGGTGAACAGA
AATAGAGATCAGAGAAAAAAAAGCCCCAGTCGTAAAAGGCCCAATTCTCACTCGAAGAAG
CGCAGCCGCTCCAAAAGTCGGGAACGAAACGTGAAAAAAAAGAAGCAATATAAATACTGG
GACGTTGCACCAGCTGGTTTCGAACACCTAACACCATTGCAATATAAGGCGATGCAAGCA
GCAGGACAAATTCCTCTCATGGCTACAACACCTAGTTTGGGAAGCGCCAACGTGGCAGTT
CCTGGTGCCACGGCTCCTTTGCCAGGCAATCAGATGACACGACAGCCATTCTATCTCTTC
CAAGCACGCCGTTTGTATGTCGGCAATATTCCGTTCGGAGTCACGGAGGATGCTATGATG
GATTTCTTCAATCATCAAATGACATTGTCTGGTTTAGCACAAGCCCCTGGCAACCCTGTT
CTGGCCGTCCAAATCAACCTTGACAAAAATTTCGCCTTTCTTGAGTTTCGTTCGGTAGAT
GAAACAACACAGGCTTTAGCATTCGATGGAATCAATTTCATGGGGCAATCCCTGAAAATT
CGTCGTCCGAGCGATTACAAGCCATTGCCAGGATCCCTCGAGACTCCATCAGTGCATTTG
CCAGGAGTGGTATCAACAGTTGTACAGGATTCACTTCAGAAGATATTTGTGGGTGGCCTT
CCGAATTATCTGAACGAAGATCAAGTTAAGGAATTGCTGACGTCTTTTGGACCATTGCGT
GCATTCAACTTGGTGAAAGATAGTGCCACTTCGTTGTCTAAAGGTTATGCATTCTGTGAG
TATGTGGATTGCCAGATAACAGATCAAGCTATCGCTGGCCTCAATGGAATGCAGCTCGGT
GAAAAAAAGCTAATCGTGCAACGTGCGAGTGTGGGAGCAAAGGGTGGTATCATGAATATG
CTGCAAACTCCTGTCACATTGCAGGTTCCTGGAATGGTAACTGCAGGACAACAGGGCCCT
GTTACAGAGGTTATTTGCCTACTTAATATGGTGACAGAAGAGGAACTGAAGGAAGATGAG
GAGTATGATGACATACTCGAAGACGTCAGAGACGAGTGCAACAAACTTGGATCGGTGAAA
AGCCTTGAAATACCTCGTCCAGTGCCTGGAACCGATGTCCCGGGCGTCGGAAAGATCTTT
GTAGAATTTGACAACGCCACCGATGCGCAAAATGCTTGCAATGCTCTGTCTGGAAGAAAG
TTTGCTAACAGAGTTGTGGTCACATCATACTATGATCCTGATCTTTACCATAGAAGAGAG
TTCGACTGAAAGTTCAAATGATGTCAAGGACTCGTCGTCATATTCCCATTCAAACAAACT
TGGCTAAACAAGCAGGTTTTGGCTTGTTAGCAGTACACTTATGTTTTTATTTCCTGTAGC
TTGATGCAAGCAAGCTGAATTGTAAGTGGGAAATGGTTTGGTAAGCCACTGATAGTTGTA
CACATTGTATTATTATTCTTACCAAGGATAATTAGCTAATATCAAAAATGATTTTTTTCA
ATAAAATATCGTGACCAGTTGTTCAGTGACTAAAAAATTTGCTATGGGACTGAGAATGCT
AGATTTTTGGAAATAATCCAGCGGTGACAGCAATTGCGATTGATTACAATACAATCTATT
CATTTGCCTAGAATATACTAAGCATTTTGTTCATTCTAGTTGTGTAAAATTGCATTCCCA
ACAGGTATTGAATTGATTAAATCGTATGGAAGAAAGCTGGTCACTATGATTGAGATTTGT
GCCTTAATAAGAGTTTTCTTAGTGGGAATTCCTGACTAATATGTGAACTGAAAGCCTAAG
AGTTATTCCATTAGCCTTGAGTGTAAAACAAGGGGTGGCAAGAAATTATTTTTGATATAT
TCCCATTAGGGAAGCCACAATGTCTAGACAGTAGTAAAGTGATCAGCATTAAAACGAAAC
AACAACATTGTTTTTATGCACTAATAATTCTTTAATCCCAGCTTTCGTCATTGCCGAAGG
CATCAAAGCCCGACTGTTGCTTCGTGCCTGCACCACCGCCGTCGTTATAGTCAGAATCAG
TGGTTTGTCTAGATTTGTGCACGTCCAAATCCTGCTTTTCTGGCATCACGAGCTCCAAAC
TGTCCTCTGCCAGCTCCGAAGCTGGTTCCTACAGCGCTCTCTGCACAGTCTTCCAGCCAG
CCTGGCACTTCCTGTTGCGAATCAGCAAGGGTTTTAACTAGTGATCGTGCAAGAGCACCG
TCTTTGTCATCGCAATAGAAAGATGTTGCTTGACCCAAGTTTCCACAGCGTCCGGTACGC
CCGATACGGTGAACGTATTCATCTATTTCTGACGGCAGATCAAAATTTATGACATGCTCC
ACTTTCGGTATGTCCAATCCTCGAGCAGCAACAGAAGTAGCAATGAGAATAGGGCAGACT
CCACTTTTGAAATCATACAATGCCTGTTCTCTTTCTCGCTGCAGTCTGTCTCCATGAATG
CTCGTAGTAGGACAGCCTTCTTGAGAAAGAAAGCATGCTAGAAAATCAGCATTGCGTTTT
GTATCAACAAAAACCAAAGTTCTCGCTTTAGTTTCCTCCACATCAGCAATTAACTGCATC
AGTTTTTCTCTTTTATCATTGTTATCTACTTGCAGGACAGTTTGCGTCACATCAGAACAA
GCTCCACCCACGCGACCAACAGTCAGAAACAAAAAGTCGTCACGAAGAAAATCATGAGCC
AACTCCTGAATGTTGTTCGGGAATGTGGCACTAAACATGAGGGTATGACGGTTGTACTTA
TCTGGGATATCCGGCGCCGCGACAAGCCGTCTTATTTCCGGCTCAAATCCCATGTCAAGC
ATCCGGTCAGCTTCGTCTAATATCAGATACTGCAAATTGGCCAGGCCGACTTTACCTCGG
TTGATAAAATCCAGGAGGCGTCCAGGAGTGGCTATGAGGATATTACATCCTCGACTCAGC
TGAGACAACTGATGCGCTACGCTGGTTCCTCCATATGCAACAACTGGTTTGATGATTGTG
TTCTTTGAAAATTTTCTAGTCTCCAGAAAAATCTGATACACCAGTTCTCTTGTAGGGCCA
ACTACAACAGCTTGCGGTAATTGCTTTTCAGAAAACATATCATTAGTGATCCCGTTCTTT
ACCATTCCACGAAGAACAGGCAAAAGAAAAGCTGCTGTCTTCCCAGAGCCTGTTTGAGCA
CAAGCCATTAAATCCCTATCAGAATTCACAATCGGAATGCTGTATTTCTGCACGGGCGTA
GGTTTCTTGTAATTTGCTTTCTTGATGTTTTGCCGTACAGTTTCAGGCAGGTCTGCTTCG
TCAAAAGTCAATATGCCTCTTGGAGGATTTTCTCCTGTGACCTCTACCGGTATTGTGTCA
TAATTATCGAAATGAATTCCGCTTTGCACAGTGGAGTACATCAATTCCTCTTCTGGCGGG
GGAGGCGGTACATATATCGGTGGTCTATCGCTATTATTCTCTCCATCACCATGATTATAG
CTTCGGTTGCCTTTTGTTGAACCATCAAATCCTGAGGATTCTCCAGATGGGCATTCTCGT
GCCATATGGCCATCTTGGCCACATTTAAAGCATCCTCTGCTTCTACCT
| TIGRFAM |
U2AF_lg (IPR006529) - T[67-521] 7.7E-148 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[203-288] 8.6E-61 - T[289-292] 8.6E-61 - T[313-364] 8.6E-61 - T[365-386] 8.6E-61 - T[419-522] 7.6E-33 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[203-285] 13.891 - T[313-391] 15.374 - T[423-513] 9.286 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[203-287] 7.12E-19 - T[314-401] 1.29E-27 - T[430-514] 1.29E-27 |
| SMART |
RRM_dom (IPR000504) - T[204-281] 2.1E-12 - T[314-387] 7.3E-17 - T[425-509] 0.39 |
| Pfam |
RRM_dom (IPR000504) - T[205-279] 4.7E-6 - T[315-384] 1.4E-15 - T[447-506] 7.6E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| U2AF2_HUMAN | 71 % | 552 | 0 |